Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_P05
         (504 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16018| Best HMM Match : Antimicrobial18 (HMM E-Value=0.89)          27   6.6  
SB_4309| Best HMM Match : 7tm_1 (HMM E-Value=4.7e-33)                  27   6.6  
SB_15681| Best HMM Match : Na_Ca_ex (HMM E-Value=1.9e-36)              27   8.8  
SB_6866| Best HMM Match : Peptidase_C48 (HMM E-Value=0.045)            27   8.8  
SB_51870| Best HMM Match : TPR_2 (HMM E-Value=1.1e-10)                 27   8.8  

>SB_16018| Best HMM Match : Antimicrobial18 (HMM E-Value=0.89)
          Length = 1494

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = -2

Query: 143 SPLVQQNSLPAEKLVGIQSPPQFFTNKKAFSLLTSRSTAPQD 18
           S  +  +SLP++ L     P  F T+  + S+  + S+ P D
Sbjct: 595 SVFLTSSSLPSDFLTSSSLPSDFLTSSSSLSVFPTSSSLPSD 636


>SB_4309| Best HMM Match : 7tm_1 (HMM E-Value=4.7e-33)
          Length = 309

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 20/60 (33%), Positives = 28/60 (46%)
 Frame = +2

Query: 119 KNSAALTENITNANTIIKRSVIKKKKLFILHFCISCF*FVAVVRWQRNMS*NKRDISNYA 298
           KNS A  +NI+ A     R  + K+   +    +SCF  VA++   R     K DI N A
Sbjct: 196 KNSVA-PQNISAAEEAAMRQKLFKRSACVTVVFVSCFLPVAIIHTLRLYIGVKTDIRNIA 254


>SB_15681| Best HMM Match : Na_Ca_ex (HMM E-Value=1.9e-36)
          Length = 183

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +3

Query: 258 GICRKIRETLVITPTYITLFNRCIFYCFALIMSVI 362
           G+C    +  V+  T+  LF  CIFY  ALI+ +I
Sbjct: 81  GMCAMFSKG-VLELTWWPLFRDCIFYSLALIILII 114


>SB_6866| Best HMM Match : Peptidase_C48 (HMM E-Value=0.045)
          Length = 1050

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 8/25 (32%), Positives = 17/25 (68%)
 Frame = +3

Query: 276 RETLVITPTYITLFNRCIFYCFALI 350
           R+T ++   Y+++FN C F+ + L+
Sbjct: 819 RQTALVGVKYVSVFNPCFFFLYLLL 843


>SB_51870| Best HMM Match : TPR_2 (HMM E-Value=1.1e-10)
          Length = 279

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -2

Query: 107 KLVGIQSPPQFFTNKKAFSLLTSRSTAPQDNSS 9
           + VGIQ P    + +K FSLL+ R T    N+S
Sbjct: 2   RAVGIQGPALRNSTRKCFSLLSPRKTFVGRNTS 34


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,114,600
Number of Sequences: 59808
Number of extensions: 222929
Number of successful extensions: 427
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 403
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 426
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1099461690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)