Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_P05
         (504 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80840-3|AAB37932.1|  332|Caenorhabditis elegans Hypothetical pr...    29   1.9  
AF025461-4|AAB70993.1|  270|Caenorhabditis elegans Hypothetical ...    28   3.3  
AF040653-4|ABS83854.1|  339|Caenorhabditis elegans Hypothetical ...    28   4.4  
Z72514-3|CAA96673.1|  741|Caenorhabditis elegans Hypothetical pr...    27   7.7  
AF040653-3|ABS83855.1|  390|Caenorhabditis elegans Hypothetical ...    27   7.7  

>U80840-3|AAB37932.1|  332|Caenorhabditis elegans Hypothetical
           protein F08D12.8 protein.
          Length = 332

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +2

Query: 86  ATGFPLAFLPAKNSAALTENITNANTIIKRSVIKKKKLFILH 211
           AT FP+  LP KN   + +N++  N I      K  K  ++H
Sbjct: 2   ATSFPVLCLPNKNIRDVLQNMSTCNLIAFSLCSKATKSHVMH 43


>AF025461-4|AAB70993.1|  270|Caenorhabditis elegans Hypothetical
           protein M01D1.7 protein.
          Length = 270

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = +2

Query: 80  VAATGFPLAFLPAKNSAALTENITNANTIIKRSVIKKKKLFILHFC 217
           +AA  FPL  LP KN A++   +     I    +  K K +I  FC
Sbjct: 1   MAAHSFPLLRLPPKNLASVLRQVEIIEQIGLSLLSNKTKEYIRKFC 46


>AF040653-4|ABS83854.1|  339|Caenorhabditis elegans Hypothetical
           protein K05F6.12 protein.
          Length = 339

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 16/45 (35%), Positives = 19/45 (42%)
 Frame = +2

Query: 86  ATGFPLAFLPAKNSAALTENITNANTIIKRSVIKKKKLFILHFCI 220
           A  FPL  LP  N   +  N+          +  K K FI HFCI
Sbjct: 19  ALSFPLLSLPLDNLKDVFRNMKITELTCCSLLSTKTKHFIRHFCI 63


>Z72514-3|CAA96673.1|  741|Caenorhabditis elegans Hypothetical
           protein T10B10.3 protein.
          Length = 741

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +1

Query: 34  ERDVNREKAFLFVKNCGGDWIPTSFSAGKEFCCTNGEH 147
           ER    +  FLF  N G +WI +S  A +++C   G +
Sbjct: 510 ERSTATKSGFLFKSNIG-NWIKSSDEAEQKYCMIVGNN 546


>AF040653-3|ABS83855.1|  390|Caenorhabditis elegans Hypothetical
           protein K05F6.4 protein.
          Length = 390

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 15/47 (31%), Positives = 20/47 (42%)
 Frame = +2

Query: 80  VAATGFPLAFLPAKNSAALTENITNANTIIKRSVIKKKKLFILHFCI 220
           + A  FPL  LP  N   +  N+          + K+ K FI  FCI
Sbjct: 66  MVAPSFPLLRLPLTNLKYIFRNMKITELTCCSLISKRTKHFIRQFCI 112


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,255,323
Number of Sequences: 27780
Number of extensions: 176235
Number of successful extensions: 371
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 370
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 371
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 967231538
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)