Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_P05
         (504 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    25   0.59 
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    25   0.59 
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    25   0.59 
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    25   0.59 
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    22   3.2  
DQ435328-1|ABD92643.1|  143|Apis mellifera OBP11 protein.              22   4.2  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   5.5  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    21   9.6  

>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 24.6 bits (51), Expect = 0.59
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -2

Query: 134 VQQNSLPAEKLVGIQSPPQFFTNKKAFSLLTSRSTAP 24
           ++ N++PA  ++G+ +   FFT    F     RST P
Sbjct: 324 LEWNAVPARVMIGVTTMLNFFTTSNGF-----RSTLP 355


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 24.6 bits (51), Expect = 0.59
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -2

Query: 134 VQQNSLPAEKLVGIQSPPQFFTNKKAFSLLTSRSTAP 24
           ++ N++PA  ++G+ +   FFT    F     RST P
Sbjct: 293 LEWNAVPARVMIGVTTMLNFFTTSNGF-----RSTLP 324


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 24.6 bits (51), Expect = 0.59
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -2

Query: 134 VQQNSLPAEKLVGIQSPPQFFTNKKAFSLLTSRSTAP 24
           ++ N++PA  ++G+ +   FFT    F     RST P
Sbjct: 344 LEWNAVPARVMIGVTTMLNFFTTSNGF-----RSTLP 375


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 24.6 bits (51), Expect = 0.59
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -2

Query: 134 VQQNSLPAEKLVGIQSPPQFFTNKKAFSLLTSRSTAP 24
           ++ N++PA  ++G+ +   FFT    F     RST P
Sbjct: 293 LEWNAVPARVMIGVTTMLNFFTTSNGF-----RSTLP 324


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 8/12 (66%), Positives = 11/12 (91%)
 Frame = +2

Query: 86  ATGFPLAFLPAK 121
           ATG+PLA++ AK
Sbjct: 140 ATGYPLAYVAAK 151


>DQ435328-1|ABD92643.1|  143|Apis mellifera OBP11 protein.
          Length = 143

 Score = 21.8 bits (44), Expect = 4.2
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +1

Query: 19  SCGAVERDVNREKAFLFVKNCGGDWIPTSFSA 114
           SC  V+     EK+F+F+K C  +  P +F A
Sbjct: 112 SCSNVDSSDKCEKSFMFMK-CMYEVNPIAFIA 142


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.4 bits (43), Expect = 5.5
 Identities = 5/13 (38%), Positives = 10/13 (76%)
 Frame = +1

Query: 229 LICSSCSMATEYV 267
           ++C +CSM  +Y+
Sbjct: 354 VVCDACSMGVKYI 366


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 20.6 bits (41), Expect = 9.6
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +3

Query: 285 LVITPTYITLFNRCIFYCFALIMSVII*CAYHY 383
           L +TPTY  + +   FY   ++M  I    Y Y
Sbjct: 186 LDLTPTYAVVSSSISFYVPCIVMLGIYCRLYCY 218


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 115,978
Number of Sequences: 438
Number of extensions: 2461
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13864083
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)