Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_P05
         (504 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g25280.1 68416.m03157 proton-dependent oligopeptide transport...    29   1.3  
At3g49620.1 68416.m05423 2-oxoacid-dependent oxidase, putative (...    27   5.4  

>At3g25280.1 68416.m03157 proton-dependent oligopeptide transport
           (POT) family protein contains Pfam profile: PF00854 POT
           family
          Length = 521

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
 Frame = -1

Query: 222 LIQK*RINSFFFLITDLFMIVLAFVMFSVSAAEFFAGRKASGNPVAATVFH-KQEGL 55
           L+ K   +SF   +  L  I L F++ S+   EFF  + +SGN   ++ F+ K+ GL
Sbjct: 327 LMNKKLFHSFEIPVPSLTAIPLIFMLLSIPLYEFFGKKISSGNNNRSSSFNLKRIGL 383


>At3g49620.1 68416.m05423 2-oxoacid-dependent oxidase, putative
           (DIN11) identical to partial cds of 2-oxoacid-dependent
           oxidase (din11) from GI:10834554 [Arabidopsis thaliana];
           identical to cDNA 2-oxoacid-dependent oxidase (din11)
           GI:10834553; contains Pfam profile PF03171:
           oxidoreductase, 2OG-Fe(II) oxygenase family
          Length = 357

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 14/31 (45%), Positives = 16/31 (51%)
 Frame = +1

Query: 52  EKAFLFVKNCGGDWIPTSFSAGKEFCCTNGE 144
           +K  L VKN  GDWIP     G  F C  G+
Sbjct: 245 DKTALQVKNVDGDWIPAIPIPG-SFICNIGD 274


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,413,084
Number of Sequences: 28952
Number of extensions: 149560
Number of successful extensions: 277
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 274
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 277
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 898188928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)