Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_P04
         (624 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC31F10.02 |||thioesterase superfamily protein|Schizosaccharom...    74   2e-14
SPBC26H8.11c |||conserved fungal protein|Schizosaccharomyces pom...    29   0.55 
SPAC1002.09c |dld1|dldh|dihydrolipoamide dehydrogenase Dld1|Schi...    27   1.7  
SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces pom...    27   2.2  
SPBC902.02c |ctf18|chl12|DNA replication factor C complex subuni...    26   5.1  
SPCC1795.09 |yps1||aspartic protease Yps1|Schizosaccharomyces po...    25   8.9  

>SPBC31F10.02 |||thioesterase superfamily
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 161

 Score = 73.7 bits (173), Expect = 2e-14
 Identities = 47/141 (33%), Positives = 71/141 (50%), Gaps = 2/141 (1%)
 Frame = +1

Query: 118 GTKGIKIAELFTKTIAATKGFDQNL-RKLKVTSCGNGSMVTEFQVGPEHLNQRGTLHGGF 294
           GTK +       +    T GFD ++   +++ S   G +    ++   HLN+ G LHGG 
Sbjct: 7   GTKVLSFVRSVWQDFVNTNGFDAHVVSDIQIISAVPGFVECSLKLQKHHLNRMGNLHGGC 66

Query: 295 IAHLVDAISTYALTTNENVDTRGVSIDLSLSF-YSAAKEGDNIEVEAKTRKTGKKIAFLE 471
           IA L D   + AL  +  +   GVSID++ +F  S    G +I + AK  + G  IAF  
Sbjct: 67  IAALTDLGGSLAL-ASRGLFISGVSIDMNQTFLQSGGTLGSSILLHAKCDRLGSNIAFTS 125

Query: 472 VEVRNKDKNQVLASGRHTKYI 534
           V+      N+V A GRHTK++
Sbjct: 126 VDFLT-SSNEVFAKGRHTKFV 145


>SPBC26H8.11c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 175

 Score = 29.1 bits (62), Expect = 0.55
 Identities = 21/85 (24%), Positives = 38/85 (44%), Gaps = 1/85 (1%)
 Frame = +1

Query: 205 VTSCGNGSMVTEFQVGPEHLNQRGTLHGGFIAHLVDAISTYALTTNENVDTRGVSIDLSL 384
           +   G GS+V  F    +    +  +HGGFI  ++D    + +  N      GV++ L  
Sbjct: 53  IEKSGKGSVVY-FHPTSDLCGYKNIVHGGFITTMLDEALAFGVFPN-FPSKMGVTVQLDT 110

Query: 385 SFYSAAKEGDNIEVEAKTRKT-GKK 456
           ++ + A      ++  KT K  G+K
Sbjct: 111 TYVAPALCSHLYKIVTKTTKVEGRK 135


>SPAC1002.09c |dld1|dldh|dihydrolipoamide dehydrogenase
           Dld1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 511

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = +1

Query: 349 VDTRGVSIDLSLSFYSAAKEGDNIEVEAKTRKTGKK 456
           +  +G+    S    SA   GD++EVE +  K  K+
Sbjct: 268 ISKQGIKFKTSTKLLSAKVNGDSVEVEIENMKNNKR 303


>SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 569

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +1

Query: 400 AKEGDNIEVEAKTRKTGKKIAFLEVE-VRNKDKNQ 501
           AKE D+IEV+ K  KT  K    +VE   +KD N+
Sbjct: 496 AKETDSIEVDDKEEKTDSKETADKVEQTDSKDTNE 530


>SPBC902.02c |ctf18|chl12|DNA replication factor C complex subunit
           Ctf18|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 960

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
 Frame = +1

Query: 343 ENVDTRGVSIDLSLSFYSAAKEGDNIEVEAKTR--KTGKKIAFLEVEVRNKDKNQVLASG 516
           E++D    SIDL +S  +A     N+         KT +K + +  E  N+D N + ++G
Sbjct: 123 ESMDIDMPSIDLDISNAAAFPRDSNLLFRNYNSHTKTSEKGSPVNFEKENQDSNVLFSTG 182

Query: 517 R 519
           R
Sbjct: 183 R 183


>SPCC1795.09 |yps1||aspartic protease Yps1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 521

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 9/30 (30%), Positives = 19/30 (63%)
 Frame = +1

Query: 301 HLVDAISTYALTTNENVDTRGVSIDLSLSF 390
           H V + ST+ +  ++N+   G+++  SLS+
Sbjct: 142 HFVTSPSTFFIRYDDNITVAGINVQDSLSY 171


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,338,383
Number of Sequences: 5004
Number of extensions: 44292
Number of successful extensions: 109
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)