Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_P04
         (624 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g04290.1 68414.m00420 thioesterase family protein contains Pf...    80   1e-15
At2g29590.1 68415.m03593 thioesterase family protein contains Pf...    53   1e-07
At3g16175.1 68416.m02042 thioesterase family protein contains Pf...    52   3e-07
At1g73500.1 68414.m08509 mitogen-activated protein kinase kinase...    27   7.7  

>At1g04290.1 68414.m00420 thioesterase family protein contains Pfam
           profile PF03061: thioesterase family protein; EST
           gb|T45093 comes from this gene
          Length = 155

 Score = 79.8 bits (188), Expect = 1e-15
 Identities = 42/111 (37%), Positives = 63/111 (56%)
 Frame = +1

Query: 199 LKVTSCGNGSMVTEFQVGPEHLNQRGTLHGGFIAHLVDAISTYALTTNENVDTRGVSIDL 378
           LKV     G +V   ++ P  LN    LHGG  A LVD I +  + T       GVS+++
Sbjct: 39  LKVDLIEPGRIVCSMKIPPHLLNAGKFLHGGATATLVDLIGSAVIYT-AGASHSGVSVEI 97

Query: 379 SLSFYSAAKEGDNIEVEAKTRKTGKKIAFLEVEVRNKDKNQVLASGRHTKY 531
           ++S+  AA   + IE+E+K  + GK +A + VE+R K   +++A GRHTKY
Sbjct: 98  NVSYLDAAFLDEEIEIESKALRVGKAVAVVSVELRKKTTGKIIAQGRHTKY 148


>At2g29590.1 68415.m03593 thioesterase family protein contains Pfam
           profile PF03061: thioesterase family protein
          Length = 158

 Score = 53.2 bits (122), Expect = 1e-07
 Identities = 41/123 (33%), Positives = 63/123 (51%), Gaps = 3/123 (2%)
 Frame = +1

Query: 172 KGFDQN--LRKLKVTSCGNGSMVTEFQVGPEHLNQRG-TLHGGFIAHLVDAISTYALTTN 342
           K F +N  LR ++V     G +   F+V P  L  R   L  G IA+LVD +   AL   
Sbjct: 32  KSFYENFSLRGIRVNRVEPGFISCSFKV-PLRLTDRDKNLANGAIANLVDEVGG-ALVHG 89

Query: 343 ENVDTRGVSIDLSLSFYSAAKEGDNIEVEAKTRKTGKKIAFLEVEVRNKDKNQVLASGRH 522
           E +    VS+D+S++F S AK G+ +E+ ++            V VRNK   +++A GRH
Sbjct: 90  EGLPM-SVSVDMSIAFLSKAKLGEELEITSRLLGERGGYKGTIVVVRNKMTGEIIAEGRH 148

Query: 523 TKY 531
           + +
Sbjct: 149 SMF 151


>At3g16175.1 68416.m02042 thioesterase family protein contains Pfam
           profile PF03061: thioesterase family protein
          Length = 157

 Score = 52.0 bits (119), Expect = 3e-07
 Identities = 28/110 (25%), Positives = 59/110 (53%)
 Frame = +1

Query: 190 LRKLKVTSCGNGSMVTEFQVGPEHLNQRGTLHGGFIAHLVDAISTYALTTNENVDTRGVS 369
           L+ L++   G G +  +  V    + + G+ + G I  ++D+I   A+ ++       +S
Sbjct: 30  LKGLELIHVGKGILRCKLLVTDHVVGEDGSWNAGVITAVMDSIGASAVYSSGG--GLHIS 87

Query: 370 IDLSLSFYSAAKEGDNIEVEAKTRKTGKKIAFLEVEVRNKDKNQVLASGR 519
           +DL+ SFYS AK  + +E+EA+   +   +    +E+R +   +++A+GR
Sbjct: 88  VDLNSSFYSTAKIHETVEIEARVNGSNGGLKSAVIEIRRETSGEIIATGR 137


>At1g73500.1 68414.m08509 mitogen-activated protein kinase kinase
           (MAPKK), putative (MKK9) mitogen-activated protein
           kinase kinase (MAPKK) family, PMID:12119167
          Length = 310

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
 Frame = +1

Query: 151 TKTIAATKGFDQ-NLRKLKVTSCGNGSMV 234
           T T+A   G    +L KL V  CGNG +V
Sbjct: 33  TTTVAGCNGISACDLEKLNVLGCGNGGIV 61


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,855,256
Number of Sequences: 28952
Number of extensions: 220412
Number of successful extensions: 548
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 541
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 547
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1265787216
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)