Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_F_P03
(588 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC902.05c |idh2|glu2|isocitrate dehydrogenase |Schizosaccharom... 28 1.2
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces... 28 1.2
SPAC664.03 |||RNA polymerase II associated Paf1 complex |Schizos... 26 4.7
SPBC13E7.06 |msd1|mug172|spindle pole body protein Msd1|Schizosa... 26 4.7
SPBC13E7.04 |atp16||F1-ATPase delta subunit |Schizosaccharomyces... 26 4.7
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 25 8.2
SPBC1703.07 |||ATP citrate synthase subunit 1 |Schizosaccharomyc... 25 8.2
SPBC1347.10 |cdc23|mcm10|MCM-associated protein Mcm10|Schizosacc... 25 8.2
SPAC23H4.15 |||ribosome biogenesis protein Tsr1 |Schizosaccharom... 25 8.2
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc... 25 8.2
>SPBC902.05c |idh2|glu2|isocitrate dehydrogenase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 378
Score = 27.9 bits (59), Expect = 1.2
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = +2
Query: 77 ALAVGVNALTEEQKAEITKSSLPLIAECSKEFSVNQGDIDAAKKLGD 217
A G N +T KA I + + L EC+KE + DI+ +++ D
Sbjct: 200 ARQTGKNNITVVHKATIMRMADGLFLECAKELAPEYPDIELREEILD 246
>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1526
Score = 27.9 bits (59), Expect = 1.2
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +1
Query: 313 EEQEISYQRGGLESLRETNGDVRSRKRQ 396
EE+++ +G LESLRE N V S K +
Sbjct: 948 EEKDLLDTKGELESLRENNATVLSEKAE 975
>SPAC664.03 |||RNA polymerase II associated Paf1 complex
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 457
Score = 25.8 bits (54), Expect = 4.7
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = -1
Query: 255 MKHPTKQEFKPLGSPSFLAASMSP*FTLNSLEHSAIRGNDD 133
+KHPTK + KP+ A ++ P ++ ++H +R DD
Sbjct: 176 LKHPTKPDLKPVS-----AWNLLPNTSMAGIQHLMLRVADD 211
>SPBC13E7.06 |msd1|mug172|spindle pole body protein
Msd1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 331
Score = 25.8 bits (54), Expect = 4.7
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +2
Query: 365 LTEMCAPENDKPVSDSDKGCERAKLLLDCFVANK 466
L EM +P ++P S+ + CE +LLD + N+
Sbjct: 244 LVEMLSPLYERPNSNPFEVCELNAILLDAKIQNQ 277
>SPBC13E7.04 |atp16||F1-ATPase delta subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 160
Score = 25.8 bits (54), Expect = 4.7
Identities = 14/32 (43%), Positives = 23/32 (71%), Gaps = 1/32 (3%)
Frame = +3
Query: 378 ALQKTTNQ-SVTVTRAAKEQNFSSTVSLQTKE 470
A+Q+ +N+ S+TV A K ++FSS+V+ Q E
Sbjct: 97 AVQQPSNELSITVPEAYKLEDFSSSVANQLLE 128
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 25.0 bits (52), Expect = 8.2
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = +3
Query: 384 QKTTNQSVTVTRAAKEQNFSSTVSLQTKEVSRSSHFKEQS 503
QK+ +S++ + ++ NF +T+S +EV S KE S
Sbjct: 25 QKSQKKSISPSSGSELPNFKTTISQNNEEVKTS--LKEDS 62
>SPBC1703.07 |||ATP citrate synthase subunit 1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 615
Score = 25.0 bits (52), Expect = 8.2
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = -2
Query: 488 VRRPRNFLCLQRNSRGEVLLFRS 420
VR+P +F+C N RG L + +
Sbjct: 354 VRKPSSFICTISNDRGSELTYNN 376
>SPBC1347.10 |cdc23|mcm10|MCM-associated protein
Mcm10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 593
Score = 25.0 bits (52), Expect = 8.2
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = -1
Query: 228 KPLGSPSFLAASMSP*FTLNSLEHSAIRGNDD 133
KP SF A+ M+P +L S +SAI G +D
Sbjct: 477 KPSVLASFNASIMNPKSSLPSFSNSAILGTND 508
>SPAC23H4.15 |||ribosome biogenesis protein Tsr1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 25.0 bits (52), Expect = 8.2
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = +1
Query: 268 NHQRKWSFRCSRYY*EEQEISYQRGGL 348
+H R +R SR Y QEISY G L
Sbjct: 240 SHPRGIHWRDSRSYLLSQEISYSNGNL 266
>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1428
Score = 25.0 bits (52), Expect = 8.2
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = -3
Query: 295 IEKTTCVDDSSFLHETSYKARVQTARIT-KFLSRVN 191
I TCV D+ E Y +R +R+T F+S+ N
Sbjct: 976 IPDVTCVIDTGVHREMRYNSRRHLSRLTDTFVSKAN 1011
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,154,360
Number of Sequences: 5004
Number of extensions: 40841
Number of successful extensions: 136
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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