Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_F_P03
(588 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0645 - 25814302-25814759,25814853-25815005,25815032-258152... 33 0.17
11_06_0653 + 25911162-25911272,25911648-25911694,25912877-259133... 29 2.1
11_06_0656 + 25926192-25926289,25927530-25927659,25928248-259282... 29 3.6
04_04_0956 + 29644425-29645579 29 3.6
03_03_0027 - 13876398-13876973,13877082-13877159,13877425-138775... 29 3.6
02_05_0888 - 32517876-32518087,32518320-32518694,32519551-325196... 28 4.8
01_05_0530 + 22984672-22984821,22985444-22985676,22986659-229867... 28 4.8
12_02_0118 - 13869237-13869307,13869375-13869465,13870321-138704... 27 8.4
>11_06_0645 -
25814302-25814759,25814853-25815005,25815032-25815214,
25815342-25815531,25815624-25815784,25816136-25816623,
25817035-25817075
Length = 557
Score = 33.1 bits (72), Expect = 0.17
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = -3
Query: 343 LLAGKIFLALLNSSGYIEKTTCVDDSSFLHETSYKARVQTA 221
LL+GK++ L N GY+ D+SSF+ +K V A
Sbjct: 112 LLSGKLYFRLQNGVGYLNSAKFQDNSSFVPSRKFKLGVMAA 152
>11_06_0653 +
25911162-25911272,25911648-25911694,25912877-25913355,
25914089-25914249,25914324-25914519,25914745-25914807,
25914898-25915047,25915148-25915494
Length = 517
Score = 29.5 bits (63), Expect = 2.1
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = -3
Query: 355 GFQVLLAGKIFLALLNSSGYIEKTTCVDDSSFLHETSYKARVQTA 221
G + LL+GK++ L GY+ D+SSF+ K V A
Sbjct: 144 GKEHLLSGKLYFRLQGGVGYLNSAKFQDNSSFVPSKRLKLGVMAA 188
>11_06_0656 +
25926192-25926289,25927530-25927659,25928248-25928294,
25929274-25929388,25929504-25929753,25930079-25930239,
25930372-25930567,25930672-25930836,25930918-25931070,
25931160-25931248,25931385-25931423,25931460-25931681,
25933503-25934165
Length = 775
Score = 28.7 bits (61), Expect = 3.6
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = -3
Query: 343 LLAGKIFLALLNSSGYIEKTTCVDDSSFLHETSYKARVQTA 221
LL+GK++ L N GY+ D+SSF+ +K V A
Sbjct: 150 LLSGKLYFRLQNGVGYL-NAKFQDNSSFVPSKKFKLGVMAA 189
>04_04_0956 + 29644425-29645579
Length = 384
Score = 28.7 bits (61), Expect = 3.6
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +2
Query: 47 ANSFVVLAFCALAVGVNALTEEQKAEITKSSLP 145
ANS VVL F A +G+ A ++E + + + P
Sbjct: 165 ANSVVVLTFSAALLGIGASSDETASSVPRGKYP 197
>03_03_0027 -
13876398-13876973,13877082-13877159,13877425-13877554,
13877820-13878007
Length = 323
Score = 28.7 bits (61), Expect = 3.6
Identities = 20/84 (23%), Positives = 36/84 (42%)
Frame = +2
Query: 89 GVNALTEEQKAEITKSSLPLIAECSKEFSVNQGDIDAAKKLGDPSGLNSCFVGCFMKKAG 268
G A T+E T +P + E + D A+ ++G G + V C+M + G
Sbjct: 184 GAAATTKEAFEWATSVPVPALVRAGGELARFLNDT-ASYRIGKSGGDMASTVECYMAERG 242
Query: 269 IINASGLFDVAATIEKSKKYLTSE 340
+ + VAA E++ + + E
Sbjct: 243 VGGGEAVAAVAALAERAWRTINGE 266
>02_05_0888 - 32517876-32518087,32518320-32518694,32519551-32519638,
32520145-32520384,32521033-32521149,32521213-32521606,
32521752-32521998,32522086-32522315,32522768-32522823,
32522903-32523094,32523274-32523376,32523478-32523544,
32524312-32525154,32525547-32525670,32525965-32526213,
32526354-32526443,32526530-32526649,32526664-32526738,
32527001-32527147,32527255-32527365,32527446-32527667,
32527777-32527896,32527971-32528270,32528355-32528480,
32529246-32529360,32529556-32530019,32530119-32530253,
32530684-32530788,32530876-32531053,32531143-32531864
Length = 2188
Score = 28.3 bits (60), Expect = 4.8
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = +3
Query: 381 LQKTTNQSVTVTRAAKEQNFSSTVSLQTKEVSRSSHFK 494
+++TT S +R AKEQN + V +T+ R++H K
Sbjct: 1294 VKRTTRNS---SRLAKEQNVEAHVKTRTRSSKRTAHMK 1328
>01_05_0530 +
22984672-22984821,22985444-22985676,22986659-22986743,
22986953-22987036,22987114-22987455
Length = 297
Score = 28.3 bits (60), Expect = 4.8
Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Frame = +2
Query: 95 NALTEEQKAEITKSSLPLIAECSKEFSVNQGD---IDAAKKLGDPSGLNSCFVGCFMKK 262
NA+ + Q + + L + KE SV + D ++A KKL +PSG N + ++++
Sbjct: 99 NAIIDAQPLAVVVEPMQLESTPEKEKSVARLDDLILEAIKKLKEPSGSNRTTISSYIEE 157
>12_02_0118 -
13869237-13869307,13869375-13869465,13870321-13870440,
13870668-13870795,13871159-13871270,13871719-13871817,
13871918-13871992,13872099-13872320,13873177-13874034
Length = 591
Score = 27.5 bits (58), Expect = 8.4
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -1
Query: 306 VAATSKRPLALMIPAFFMKHPTKQ 235
+ TS PLALM+ F + HP+++
Sbjct: 392 ILTTSAMPLALMVQPFALPHPSEE 415
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,154,442
Number of Sequences: 37544
Number of extensions: 242780
Number of successful extensions: 544
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 539
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 544
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1388195172
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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