Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_F_P03
(588 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_1431| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.70
SB_8817| Best HMM Match : I-set (HMM E-Value=0) 29 2.1
SB_46179| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.9
SB_33834| Best HMM Match : PAN (HMM E-Value=0.00029) 28 6.5
SB_6215| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.5
SB_30940| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.6
SB_25019| Best HMM Match : Syntaxin (HMM E-Value=6.4) 27 8.6
SB_7108| Best HMM Match : Pili_assembly_C (HMM E-Value=0.83) 27 8.6
SB_37926| Best HMM Match : Nsp1_C (HMM E-Value=0.38) 27 8.6
SB_30776| Best HMM Match : HLH (HMM E-Value=1.7e-13) 27 8.6
SB_13870| Best HMM Match : Nsp1_C (HMM E-Value=0.23) 27 8.6
>SB_1431| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1748
Score = 31.1 bits (67), Expect = 0.70
Identities = 15/48 (31%), Positives = 28/48 (58%)
Frame = -3
Query: 304 SGYIEKTTCVDDSSFLHETSYKARVQTARITKFLSRVNVALIHAELFG 161
+ YI++ + + ++ YKA+ + + +FLSR N+AL A+ FG
Sbjct: 562 ASYIDQLERSQNLQYQGKSLYKAKNKQRTLKEFLSRANLALWFAKAFG 609
>SB_8817| Best HMM Match : I-set (HMM E-Value=0)
Length = 2526
Score = 29.5 bits (63), Expect = 2.1
Identities = 28/111 (25%), Positives = 52/111 (46%), Gaps = 7/111 (6%)
Frame = +2
Query: 137 SLPLIAECSKEFSVNQGDIDA--AKKLGDPSGLNSCFVGCFMKKAGIINASGLFDVAATI 310
SLP+I E K+ N+GD+ + G P + F K +++ SG F + +
Sbjct: 2203 SLPVIKEGLKDTEANEGDVVRFDIRVAGKPEPVVEWF-----KNDELLDDSGKFIIIDDV 2257
Query: 311 EKSKKYLTSEEDLKAFEKLTEMCAPENDK-----PVSDSDKGCERAKLLLD 448
+ ++D + F + E CAPE+D ++++ K + KLL++
Sbjct: 2258 D--------DKDKELFSLVIEGCAPEDDAVYSVVAMNEAGKDSSKGKLLVN 2300
>SB_46179| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4856
Score = 28.3 bits (60), Expect = 4.9
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = +2
Query: 26 VQHVKMSANSFVVLAFCALAVGVNALTEEQKAEITK 133
+ H ++ N+ +V+A + VNA ++ KAEI K
Sbjct: 52 LHHASLTGNTEIVMALLDMQCNVNARDKKGKAEIAK 87
>SB_33834| Best HMM Match : PAN (HMM E-Value=0.00029)
Length = 198
Score = 27.9 bits (59), Expect = 6.5
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -1
Query: 333 VRYFLLFSIVAATSKRPLALMIPAFFMKHPTK 238
+RY ++ I+ TSKR AL I +F + P K
Sbjct: 156 IRYKIISQILKETSKRNTALKILKYFSQFPLK 187
>SB_6215| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 697
Score = 27.9 bits (59), Expect = 6.5
Identities = 20/63 (31%), Positives = 27/63 (42%)
Frame = +1
Query: 313 EEQEISYQRGGLESLRETNGDVRSRKRQTSXXXXXGLRKSKTSPRLFRCKQRKFLGLLTL 492
+E+E+ Q G S +E S KR G KSK P+ C + + L L
Sbjct: 573 DEKEVRKQVNGTPS-QEIKKSQASDKRSAGIQKALGGSKSKLDPKEDECTNVEGIEGLML 631
Query: 493 KNK 501
KNK
Sbjct: 632 KNK 634
>SB_30940| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 247
Score = 27.5 bits (58), Expect = 8.6
Identities = 16/44 (36%), Positives = 21/44 (47%)
Frame = -3
Query: 469 SFVCNETVEEKFCSFAALVTVTDWFVVFWSAHLR*FLEGFQVLL 338
+F+ ETV F L T+ + V WS H R L FQ L+
Sbjct: 159 TFLDTETVYFPIFIFLRLPYYTNMYFVLWSVHRRPRLMAFQGLI 202
>SB_25019| Best HMM Match : Syntaxin (HMM E-Value=6.4)
Length = 128
Score = 27.5 bits (58), Expect = 8.6
Identities = 13/48 (27%), Positives = 28/48 (58%)
Frame = -3
Query: 304 SGYIEKTTCVDDSSFLHETSYKARVQTARITKFLSRVNVALIHAELFG 161
+ YI++ + + ++ ++A+ + + +FLSR N+AL A+ FG
Sbjct: 76 ASYIDQLERSQNLQYQGKSLHEAKNKQRTLKEFLSRANLALWFAKAFG 123
>SB_7108| Best HMM Match : Pili_assembly_C (HMM E-Value=0.83)
Length = 401
Score = 27.5 bits (58), Expect = 8.6
Identities = 13/48 (27%), Positives = 28/48 (58%)
Frame = -3
Query: 304 SGYIEKTTCVDDSSFLHETSYKARVQTARITKFLSRVNVALIHAELFG 161
+ YI++ + + ++ ++A+ + + +FLSR N+AL A+ FG
Sbjct: 76 ASYIDQLERSQNLQYQGKSLHEAKNKQRTLKEFLSRANLALWFAKAFG 123
>SB_37926| Best HMM Match : Nsp1_C (HMM E-Value=0.38)
Length = 295
Score = 27.5 bits (58), Expect = 8.6
Identities = 13/48 (27%), Positives = 28/48 (58%)
Frame = -3
Query: 304 SGYIEKTTCVDDSSFLHETSYKARVQTARITKFLSRVNVALIHAELFG 161
+ YI++ + + ++ ++A+ + + +FLSR N+AL A+ FG
Sbjct: 199 ASYIDQLERSQNLQYQGKSLHEAKNKQRTLKEFLSRANLALWFAKAFG 246
>SB_30776| Best HMM Match : HLH (HMM E-Value=1.7e-13)
Length = 1217
Score = 27.5 bits (58), Expect = 8.6
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 3/38 (7%)
Frame = +3
Query: 378 ALQKTTNQSVTVTRAAKEQNF---SSTVSLQTKEVSRS 482
ALQ+T NQ+VT+T + E +ST QT+E + S
Sbjct: 218 ALQQTDNQNVTITTSNNESPIVMPTSTAQNQTQEENTS 255
>SB_13870| Best HMM Match : Nsp1_C (HMM E-Value=0.23)
Length = 251
Score = 27.5 bits (58), Expect = 8.6
Identities = 13/48 (27%), Positives = 28/48 (58%)
Frame = -3
Query: 304 SGYIEKTTCVDDSSFLHETSYKARVQTARITKFLSRVNVALIHAELFG 161
+ YI++ + + ++ ++A+ + + +FLSR N+AL A+ FG
Sbjct: 199 ASYIDQLERSQNLQYQGKSLHEAKNKQRTLKEFLSRANLALWFAKAFG 246
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,826,811
Number of Sequences: 59808
Number of extensions: 292436
Number of successful extensions: 855
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 750
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 854
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1422302661
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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