Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_F_P03
(588 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF016669-5|AAY55870.1| 124|Caenorhabditis elegans Hypothetical ... 33 0.11
S42187-1|AAB22845.1| 1475|Caenorhabditis elegans pTra2A protein. 30 1.1
M91371-1|AAA28150.1| 1475|Caenorhabditis elegans membrane protei... 30 1.1
AC006608-1|AAF39755.1| 1475|Caenorhabditis elegans Transformer :... 30 1.1
AF047662-5|AAC04440.1| 385|Caenorhabditis elegans Hypothetical ... 29 2.4
U41104-3|AAK18975.1| 378|Caenorhabditis elegans Hypothetical pr... 29 3.2
Z75526-7|CAE17729.1| 325|Caenorhabditis elegans Hypothetical pr... 27 7.5
U41550-1|AAA83284.1| 1057|Caenorhabditis elegans Hypothetical pr... 27 7.5
U67956-5|AAB07694.1| 724|Caenorhabditis elegans Mechanosensory ... 27 9.9
L25312-1|AAA17404.1| 724|Caenorhabditis elegans mec-10 degeneri... 27 9.9
>AF016669-5|AAY55870.1| 124|Caenorhabditis elegans Hypothetical
protein K10G6.5 protein.
Length = 124
Score = 33.5 bits (73), Expect = 0.11
Identities = 22/60 (36%), Positives = 32/60 (53%)
Frame = -3
Query: 415 VTVTDWFVVFWSAHLR*FLEGFQVLLAGKIFLALLNSSGYIEKTTCVDDSSFLHETSYKA 236
+ T W+ V W+ L F+ FQ++ A + FLALL SG I+ + S L T +KA
Sbjct: 55 IETTSWYPVVWTCWLHMFILYFQIMGACE-FLALL--SGLIDCLMVLPLSIILSRTDFKA 111
>S42187-1|AAB22845.1| 1475|Caenorhabditis elegans pTra2A protein.
Length = 1475
Score = 30.3 bits (65), Expect = 1.1
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +2
Query: 332 TSEEDLKAFEKLTEMCAPENDKPVSDSDKGCERAKLLLD 448
T E+++ A E+ E+ E D D D+GCE + +LD
Sbjct: 1225 TLEQNMNALEECFELGVDEYDFDEHDGDEGCELVQDMLD 1263
>M91371-1|AAA28150.1| 1475|Caenorhabditis elegans membrane protein
protein.
Length = 1475
Score = 30.3 bits (65), Expect = 1.1
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +2
Query: 332 TSEEDLKAFEKLTEMCAPENDKPVSDSDKGCERAKLLLD 448
T E+++ A E+ E+ E D D D+GCE + +LD
Sbjct: 1225 TLEQNMNALEECFELGVDEYDFDEHDGDEGCELVQDMLD 1263
>AC006608-1|AAF39755.1| 1475|Caenorhabditis elegans Transformer : xx
animals transformedinto males protein 2, isoform a
protein.
Length = 1475
Score = 30.3 bits (65), Expect = 1.1
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +2
Query: 332 TSEEDLKAFEKLTEMCAPENDKPVSDSDKGCERAKLLLD 448
T E+++ A E+ E+ E D D D+GCE + +LD
Sbjct: 1225 TLEQNMNALEECFELGVDEYDFDEHDGDEGCELVQDMLD 1263
>AF047662-5|AAC04440.1| 385|Caenorhabditis elegans Hypothetical
protein T22B2.3 protein.
Length = 385
Score = 29.1 bits (62), Expect = 2.4
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = -2
Query: 578 FYFYSTNVIKK*LLRYYQVIIETSQALFFKVRRPRNFLC 462
FY + N+IK LL + +I+ + Q LFF + FLC
Sbjct: 282 FYPFLKNIIKFFLLSVFCLILFSMQTLFFPNQNHEFFLC 320
>U41104-3|AAK18975.1| 378|Caenorhabditis elegans Hypothetical
protein T12C9.1 protein.
Length = 378
Score = 28.7 bits (61), Expect = 3.2
Identities = 18/59 (30%), Positives = 29/59 (49%)
Frame = +3
Query: 378 ALQKTTNQSVTVTRAAKEQNFSSTVSLQTKEVSRSSHFKEQSL*CFNNYLIISKQSLFY 554
AL K +++V R K N+ V K+V+ +S + S F+N I K+ LF+
Sbjct: 139 ALHKAEDKTVFEKRTPKAVNYKEAVKQGMKDVTLASDWVSWSFDEFSNLPIDQKRILFH 197
>Z75526-7|CAE17729.1| 325|Caenorhabditis elegans Hypothetical
protein C06H2.7 protein.
Length = 325
Score = 27.5 bits (58), Expect = 7.5
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +2
Query: 119 AEITKSSLPLIAECSKEFSVNQGDI 193
A +T +SLPLI EC E+ ++ +I
Sbjct: 239 ASVTAASLPLIVECINEWRASRREI 263
>U41550-1|AAA83284.1| 1057|Caenorhabditis elegans Hypothetical
protein R04A9.2 protein.
Length = 1057
Score = 27.5 bits (58), Expect = 7.5
Identities = 22/94 (23%), Positives = 42/94 (44%), Gaps = 4/94 (4%)
Frame = +2
Query: 89 GVNALTEEQKAEITKSSLPLIAEC--SKEFSVNQGDIDAAK--KLGDPSGLNSCFVGCFM 256
G NALT E ++E+T+ + +C +++F + K + P + G F+
Sbjct: 244 GPNALTLENRSELTRIIEAITDQCLHNEKFLLYSSGTFPTKGGDIASPDEVTLIKSG-FV 302
Query: 257 KKAGIINASGLFDVAATIEKSKKYLTSEEDLKAF 358
K I++ G+ D T++ +K + L F
Sbjct: 303 KTTKIVDRDGVPDAIMTVDTTKSPFYKDTSLLKF 336
>U67956-5|AAB07694.1| 724|Caenorhabditis elegans Mechanosensory
abnormality protein10 protein.
Length = 724
Score = 27.1 bits (57), Expect = 9.9
Identities = 19/52 (36%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Frame = +2
Query: 92 VNALTEEQKAEITKSSLPLIAECSKEFSVNQGDIDAAKKL-GDPSGLNSCFV 244
++AL+EEQ+ ++++ LI +CS F+ DID +L DP+ +CFV
Sbjct: 388 MSALSEEQRILMSQAKHNLIHKCS--FNGKPCDIDQDFELVADPT-FGNCFV 436
>L25312-1|AAA17404.1| 724|Caenorhabditis elegans mec-10 degenerin
protein.
Length = 724
Score = 27.1 bits (57), Expect = 9.9
Identities = 19/52 (36%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Frame = +2
Query: 92 VNALTEEQKAEITKSSLPLIAECSKEFSVNQGDIDAAKKL-GDPSGLNSCFV 244
++AL+EEQ+ ++++ LI +CS F+ DID +L DP+ +CFV
Sbjct: 388 MSALSEEQRILMSQAKHNLIHKCS--FNGKPCDIDQDFELVADPT-FGNCFV 436
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,997,801
Number of Sequences: 27780
Number of extensions: 230334
Number of successful extensions: 693
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 678
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 693
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1237082886
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -