Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_P03
         (588 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g40530.2 68418.m04918 expressed protein contains Pfam profile...    28   5.3  
At5g40530.1 68418.m04919 expressed protein contains Pfam profile...    28   5.3  
At4g06634.1 68417.m01050 zinc finger (C2H2 type) family protein ...    28   5.3  
At3g21250.1 68416.m02685 ABC transporter family protein similar ...    27   7.0  
At5g61140.1 68418.m07670 DEAD box RNA helicase, putative similar...    27   9.3  
At3g43530.1 68416.m04621 hypothetical protein contains Pfam prof...    27   9.3  
At2g04039.1 68415.m00383 expressed protein                             27   9.3  

>At5g40530.2 68418.m04918 expressed protein contains Pfam profile
           PF05148: Protein of unknown function (DUF691)
          Length = 301

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
 Frame = +2

Query: 26  VQHVKMSANSFVVLAFCALAVGVN--ALTEEQKAEITKSSLPLIAECSKEFSVNQGDID 196
           + +  + ++S  V  FC   +G N  +  +E    +  S + LIAE    F  N G  D
Sbjct: 173 MSNTSLESSSVDVAVFCLSLMGTNYSSYIKEAHRVLRPSGMLLIAEVKSRFDPNNGGAD 231


>At5g40530.1 68418.m04919 expressed protein contains Pfam profile
           PF05148: Protein of unknown function (DUF691)
          Length = 287

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
 Frame = +2

Query: 26  VQHVKMSANSFVVLAFCALAVGVN--ALTEEQKAEITKSSLPLIAECSKEFSVNQGDID 196
           + +  + ++S  V  FC   +G N  +  +E    +  S + LIAE    F  N G  D
Sbjct: 173 MSNTSLESSSVDVAVFCLSLMGTNYSSYIKEAHRVLRPSGMLLIAEVKSRFDPNNGGAD 231


>At4g06634.1 68417.m01050 zinc finger (C2H2 type) family protein
           contains Pfam PF00096: Zinc finger, C2H2 type
          Length = 387

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 26/99 (26%), Positives = 45/99 (45%), Gaps = 7/99 (7%)
 Frame = +2

Query: 158 CSKEFSVNQGDIDAAKKLGDPSGLNSC-FVGCFMKKAGIINASGLFDVAATIEKS----- 319
           C K FS++  ++ +  K       + C + GC  + A          VAA  EK+     
Sbjct: 145 CGKAFSLDF-NLRSHMKTHSQENYHICPYSGCVKRYAHEYKLKN--HVAAYHEKNGGGET 201

Query: 320 KKYLT-SEEDLKAFEKLTEMCAPENDKPVSDSDKGCERA 433
            KY   +E+ L+  +    +C P +D+P +   +GCE+A
Sbjct: 202 PKYTPPAEKVLRTVKTPATVCGPSSDRPYACPYEGCEKA 240


>At3g21250.1 68416.m02685 ABC transporter family protein similar to
           MRP-like ABC transporter GB:AAC49791 from [Arabidopsis
           thaliana]
          Length = 1294

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +2

Query: 239 FVGCFMKKAGIINASGLFDVAATI 310
           F+GC + K+  +NAS +F V AT+
Sbjct: 363 FLGCALLKSAPLNASTIFTVLATL 386


>At5g61140.1 68418.m07670 DEAD box RNA helicase, putative similar to
            ASC-1 complex subunit P200 [Homo sapiens] GI:12061185;
            contains Pfam profiles PF00270: DEAD/DEAH box helicase,
            PF00271: Helicase conserved C-terminal domain, PF02889:
            Sec63 domain
          Length = 2146

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 17/73 (23%), Positives = 33/73 (45%)
 Frame = +2

Query: 272  INASGLFDVAATIEKSKKYLTSEEDLKAFEKLTEMCAPENDKPVSDSDKGCERAKLLLDC 451
            +N S + ++ A   + +  +  EE+    E L   C P   K    +  G  +  +L+  
Sbjct: 1036 MNESEIINMVAHSSEFENIVVREEEQHELETLARSCCPLEVKGGPSNKHG--KISILIQL 1093

Query: 452  FVANKGSFSVFSL 490
            ++ ++GS   FSL
Sbjct: 1094 YI-SRGSIDAFSL 1105


>At3g43530.1 68416.m04621 hypothetical protein contains Pfam profile
           PF03384: Drosophila protein of unknown function, DUF287
          Length = 615

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 29/106 (27%), Positives = 47/106 (44%)
 Frame = +2

Query: 110 EQKAEITKSSLPLIAECSKEFSVNQGDIDAAKKLGDPSGLNSCFVGCFMKKAGIINASGL 289
           E++ EI K     +A+   E  V + + +  K++G   G +  F G    +     A   
Sbjct: 446 EKETEIDKE----VAQGDNEREVGEKETEIDKEVGQ--GDSDIFDGNKDMELNKEVAEST 499

Query: 290 FDVAATIEKSKKYLTSEEDLKAFEKLTEMCAPENDKPVSDSDKGCE 427
             VA + EK K+   SE+D +  E    +   E D  V+DS+K  E
Sbjct: 500 IGVAES-EKDKEVTESEKDKEVAESEIGVPESEKDIEVADSEKDKE 544


>At2g04039.1 68415.m00383 expressed protein
          Length = 199

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +3

Query: 375 CALQKTTNQSVTVTRAAKEQNFSSTVSLQTKE 470
           CALQ+++  +V   +  KE+   STV++  K+
Sbjct: 46  CALQESSTSAVATEKKNKEEGEESTVAVPAKK 77


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,054,089
Number of Sequences: 28952
Number of extensions: 208191
Number of successful extensions: 613
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 598
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 613
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1161268208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)