Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_P02
         (524 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1662 + 28447419-28447666,28448429-28448573                       50   1e-06
03_02_0963 - 12769715-12769859,12770639-12770889                       48   5e-06
09_02_0195 + 5643549-5645090                                           31   0.75 
09_04_0430 + 17502387-17503505                                         28   5.3  
08_02_1012 + 23550314-23551504                                         28   5.3  
03_01_0300 + 2350232-2352274,2352349-2352669,2352752-2352838,235...    27   9.2  

>07_03_1662 + 28447419-28447666,28448429-28448573
          Length = 130

 Score = 50.0 bits (114), Expect = 1e-06
 Identities = 21/48 (43%), Positives = 32/48 (66%), Gaps = 1/48 (2%)
 Frame = +3

Query: 162 NLKFTIDCTHPAEDSILDVGNFEKYLKEHVKVE-GKTNNLSNHVVVAR 302
           ++ F IDC+ P ED I+++ + EK+L+E +KV  GK  NL + V V R
Sbjct: 20  SVSFVIDCSKPVEDKIMEIASLEKFLQERIKVAGGKAGNLGDSVTVTR 67



 Score = 39.9 bits (89), Expect = 0.001
 Identities = 22/52 (42%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
 Frame = +1

Query: 304 DKTKVAITADIPFSXXXXXXXXXXXXXXXXXXDWLRVVASAHD--AYELRYF 453
           DKTKV +T+D  FS                  DWLRV+A+  D   YELRYF
Sbjct: 68  DKTKVTVTSDGAFSKRYLKYLTKKYLKKHNVRDWLRVIAANKDRNVYELRYF 119


>03_02_0963 - 12769715-12769859,12770639-12770889
          Length = 131

 Score = 48.0 bits (109), Expect = 5e-06
 Identities = 20/48 (41%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
 Frame = +3

Query: 162 NLKFTIDCTHPAEDSILDVGNFEKYLKEHVKVE-GKTNNLSNHVVVAR 302
           ++ F IDC  P +D I+++ + EK+L+E +KV  GK  NL   V V+R
Sbjct: 21  SVTFVIDCAKPVDDKIMEIASLEKFLQERIKVAGGKAGNLGESVTVSR 68



 Score = 44.4 bits (100), Expect = 6e-05
 Identities = 24/52 (46%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
 Frame = +1

Query: 304 DKTKVAITADIPFSXXXXXXXXXXXXXXXXXXDWLRVVASAHD--AYELRYF 453
           DKTKV +T+D PFS                  DWLRV+AS  D   YELRYF
Sbjct: 69  DKTKVTVTSDGPFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYF 120


>09_02_0195 + 5643549-5645090
          Length = 513

 Score = 30.7 bits (66), Expect = 0.75
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = -2

Query: 133 ILPPFTPFLPVFWCNWAFLAT 71
           ILPP  P LP+ W +W  LAT
Sbjct: 152 ILPPSNPTLPMQWIDWEALAT 172


>09_04_0430 + 17502387-17503505
          Length = 372

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = -2

Query: 127 PPFTPFLPVFWCNWAFLATGF 65
           PP  P   +++C W F   GF
Sbjct: 270 PPIVPGTDMYYCTWGFFPVGF 290


>08_02_1012 + 23550314-23551504
          Length = 396

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -2

Query: 127 PPFTPFLPVFWCNWAFLATGF 65
           PP  P   +++C+W F   GF
Sbjct: 264 PPIVPGTDMYYCSWGFFPMGF 284


>03_01_0300 + 2350232-2352274,2352349-2352669,2352752-2352838,
            2353031-2353708,2353800-2353964,2354139-2354433,
            2354581-2354795,2354885-2355190,2355269-2355332,
            2355426-2355665,2355783-2355886
          Length = 1505

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
 Frame = -2

Query: 316  LSSYPLATTT*LLRLFVLPSTLTCSFK----YFSKLPTSKILSSAGCVQSIVNFKLIFRL 149
            ++++ LAT     +LFV    L C F+    +F   P+ +IL+     QS+V+  + FRL
Sbjct: 1005 VATFGLATAQ---KLFV--KMLRCVFRAPMSFFDTTPSGRILNRVSVDQSVVDLDIAFRL 1059


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,989,373
Number of Sequences: 37544
Number of extensions: 217217
Number of successful extensions: 566
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 554
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 564
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1154538620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)