Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_P02
         (524 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g02830.1 68414.m00243 60S ribosomal protein L22 (RPL22A) simi...    52   3e-07
At3g05560.2 68416.m00614 60S ribosomal protein L22-2 (RPL22B) id...    51   5e-07
At3g05560.1 68416.m00613 60S ribosomal protein L22-2 (RPL22B) id...    51   5e-07
At5g27770.1 68418.m03330 60S ribosomal protein L22 (RPL22C) ribo...    50   1e-06
At3g56700.1 68416.m06307 male sterility protein, putative simila...    28   3.3  
At3g60970.1 68416.m06823 ABC transporter family protein ABC tran...    27   5.8  
At2g01710.1 68415.m00099 DNAJ heat shock N-terminal domain-conta...    27   5.8  
At1g04120.1 68414.m00401 ABC transporter family protein Strong s...    27   5.8  

>At1g02830.1 68414.m00243 60S ribosomal protein L22 (RPL22A) similar
           to ribosomal protein L22 GI:710294 from [Rattus
           norvegicus]
          Length = 127

 Score = 51.6 bits (118), Expect = 3e-07
 Identities = 20/46 (43%), Positives = 30/46 (65%)
 Frame = +3

Query: 165 LKFTIDCTHPAEDSILDVGNFEKYLKEHVKVEGKTNNLSNHVVVAR 302
           + F IDC+ P +D+IL++   EK+L+E +KV GK   L N V + R
Sbjct: 18  VSFVIDCSKPVDDTILEIATLEKFLQERIKVRGKAGALGNSVSITR 63



 Score = 29.9 bits (64), Expect = 1.1
 Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
 Frame = +1

Query: 313 KVAITADIPFSXXXXXXXXXXXXXXXXXXDWLRVVASAHD--AYELRYF 453
           K+ + A+  FS                  DWLRV+AS  D   YE+RYF
Sbjct: 67  KINVNANSNFSKRYLKYLTKKYLKKYNLRDWLRVIASNKDKNVYEVRYF 115


>At3g05560.2 68416.m00614 60S ribosomal protein L22-2 (RPL22B)
           identical to 60S ribosomal protein L22-2 SP:Q9M9W1 from
           [Arabidopsis thaliana]
          Length = 124

 Score = 50.8 bits (116), Expect = 5e-07
 Identities = 19/46 (41%), Positives = 31/46 (67%)
 Frame = +3

Query: 165 LKFTIDCTHPAEDSILDVGNFEKYLKEHVKVEGKTNNLSNHVVVAR 302
           + FTIDC+ P +D I+++ + EK+L+E +KV GK   L + V + R
Sbjct: 16  VSFTIDCSKPVDDKIMEIASLEKFLQERIKVGGKAGALGDSVTITR 61



 Score = 37.1 bits (82), Expect = 0.007
 Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
 Frame = +1

Query: 304 DKTKVAITADIPFSXXXXXXXXXXXXXXXXXXDWLRVVASAHD--AYELRYF 453
           +K+K+ +TAD  FS                  DWLRV+A+  D   YELRYF
Sbjct: 62  EKSKITVTADGQFSKRYLKYLTKKYLKKHNVRDWLRVIAANKDRNLYELRYF 113


>At3g05560.1 68416.m00613 60S ribosomal protein L22-2 (RPL22B)
           identical to 60S ribosomal protein L22-2 SP:Q9M9W1 from
           [Arabidopsis thaliana]
          Length = 124

 Score = 50.8 bits (116), Expect = 5e-07
 Identities = 19/46 (41%), Positives = 31/46 (67%)
 Frame = +3

Query: 165 LKFTIDCTHPAEDSILDVGNFEKYLKEHVKVEGKTNNLSNHVVVAR 302
           + FTIDC+ P +D I+++ + EK+L+E +KV GK   L + V + R
Sbjct: 16  VSFTIDCSKPVDDKIMEIASLEKFLQERIKVGGKAGALGDSVTITR 61



 Score = 37.1 bits (82), Expect = 0.007
 Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
 Frame = +1

Query: 304 DKTKVAITADIPFSXXXXXXXXXXXXXXXXXXDWLRVVASAHD--AYELRYF 453
           +K+K+ +TAD  FS                  DWLRV+A+  D   YELRYF
Sbjct: 62  EKSKITVTADGQFSKRYLKYLTKKYLKKHNVRDWLRVIAANKDRNLYELRYF 113


>At5g27770.1 68418.m03330 60S ribosomal protein L22 (RPL22C)
           ribosomal protein L22 (cytosolic), Rattus norvegicus,
           PIR:S52084
          Length = 124

 Score = 50.0 bits (114), Expect = 1e-06
 Identities = 19/46 (41%), Positives = 31/46 (67%)
 Frame = +3

Query: 165 LKFTIDCTHPAEDSILDVGNFEKYLKEHVKVEGKTNNLSNHVVVAR 302
           + FTIDC+ P +D I+++ + EK+L+E +KV GK   L + V + R
Sbjct: 16  VSFTIDCSKPVDDKIMEIASLEKFLQERIKVGGKAGALGDSVSITR 61



 Score = 37.5 bits (83), Expect = 0.005
 Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
 Frame = +1

Query: 286 TLSSPGDKTKVAITADIPFSXXXXXXXXXXXXXXXXXXDWLRVVASAHD--AYELRYF 453
           ++S   +K+K+ +TAD  FS                  DWLRV+A+  D   YELRYF
Sbjct: 56  SVSITREKSKITVTADGQFSKRYLKYLTKKYLKKHNVRDWLRVIAANKDRNLYELRYF 113


>At3g56700.1 68416.m06307 male sterility protein, putative similar
           to SP|Q08891 Male sterility protein 2 {Arabidopsis
           thaliana}; contains Pfam profile PF03015: Male sterility
           protein
          Length = 527

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 12/37 (32%), Positives = 24/37 (64%)
 Frame = +3

Query: 183 CTHPAEDSILDVGNFEKYLKEHVKVEGKTNNLSNHVV 293
           C  P E++++D+    +++K H  +EG T+ LSN ++
Sbjct: 402 CDFPLEETVIDL----EHMKIHSSLEGFTSALSNTII 434


>At3g60970.1 68416.m06823 ABC transporter family protein ABC
           transporter-like proteins
          Length = 1037

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = -2

Query: 268 VLPSTLTCSFKYFSKLPTSKILSSAGCVQSIVNFKLIFRL 149
           +L S       YF   PT +IL+ A   QS+++ ++  +L
Sbjct: 560 MLCSIFRAPMSYFDSTPTGRILNRASTDQSVLDLEMAVKL 599


>At2g01710.1 68415.m00099 DNAJ heat shock N-terminal
           domain-containing protein simlar to AHM1 [Triticum
           aestivum] GI:6691467; contains Pfam profile PF00226:
           DnaJ domain
          Length = 311

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = -2

Query: 172 NFKLIFRLMPLPRILPPFTPFLPVFWCNWAFLATGF 65
           N +  F    +P+ LPP  P    ++C W F   GF
Sbjct: 192 NCQRAFHAASIPQ-LPPLIPGKDEYYCCWGFFPMGF 226


>At1g04120.1 68414.m00401 ABC transporter family protein Strong
            similarity to MRP-like ABC transporter gb|U92650 from A.
            thaliana and canalicular multi-drug resistance protein
            gb|L49379 from Rattus norvegicus
          Length = 1514

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = -2

Query: 280  LRLFVLPSTLTCSFKYFSKLPTSKILSSAGCVQSIVNFKLIFRL 149
            L L +L S       +F   P  +IL+     QS+V+  + FRL
Sbjct: 1022 LFLNMLRSVFRAPMSFFDSTPAGRILNRVSIDQSVVDLDIPFRL 1065


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,615,180
Number of Sequences: 28952
Number of extensions: 173105
Number of successful extensions: 450
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 440
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 450
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 967280384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)