Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_F_O24
(734 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_47652| Best HMM Match : Ribosomal_L10e (HMM E-Value=0.0041) 84 1e-16
SB_33920| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.3
SB_45389| Best HMM Match : Peptidase_M13 (HMM E-Value=4.1e-09) 31 1.3
SB_7933| Best HMM Match : GCC2_GCC3 (HMM E-Value=1.4e-18) 30 1.7
SB_810| Best HMM Match : TAF4 (HMM E-Value=4.7e-31) 30 2.2
SB_28115| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_4321| Best HMM Match : Ank (HMM E-Value=0) 29 3.9
SB_5146| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.9
SB_10713| Best HMM Match : Peptidase_C32 (HMM E-Value=3.3) 29 5.2
SB_4606| Best HMM Match : HlyIII (HMM E-Value=0.002) 28 6.8
SB_29658| Best HMM Match : zf-C3HC4 (HMM E-Value=0.0012) 28 6.8
SB_19342| Best HMM Match : Keratin_B2 (HMM E-Value=0.41) 28 6.8
SB_25165| Best HMM Match : Prominin (HMM E-Value=1.1e-05) 28 9.0
SB_14136| Best HMM Match : Exonuc_X-T (HMM E-Value=6e-25) 28 9.0
SB_21723| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.0
SB_12904| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.0
>SB_47652| Best HMM Match : Ribosomal_L10e (HMM E-Value=0.0041)
Length = 50
Score = 83.8 bits (198), Expect = 1e-16
Identities = 40/50 (80%), Positives = 43/50 (86%)
Frame = +2
Query: 392 MRGAFGKPQGTVARVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGRQK 541
MRGAFGKPQGTVARV IGQ I+S+R+ D KA IEALRRAKFKFPGRQK
Sbjct: 1 MRGAFGKPQGTVARVNIGQTIISIRTKDGNKAAAIEALRRAKFKFPGRQK 50
>SB_33920| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1278
Score = 30.7 bits (66), Expect = 1.3
Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Frame = -2
Query: 550 YVDLLTSGELELGTAQSLDDLCLPPVTRAHGHDGLSNANT--CYSTLRLAKRTT 395
Y + ++G + T D+C+P + HGH +ANT CY + A +T
Sbjct: 68 YAESCSAGHYVVRTGNPFTDICIP--CQCHGHSDQCDANTGICYVRIYTADLST 119
>SB_45389| Best HMM Match : Peptidase_M13 (HMM E-Value=4.1e-09)
Length = 177
Score = 30.7 bits (66), Expect = 1.3
Identities = 17/40 (42%), Positives = 22/40 (55%)
Frame = +2
Query: 242 LEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLS 361
L I C Y KN +D +RM +HP H IRIN ++S
Sbjct: 115 LSYAHIFCGSYS-KNAAEDI--VRMSVHPLHPIRINGVVS 151
>SB_7933| Best HMM Match : GCC2_GCC3 (HMM E-Value=1.4e-18)
Length = 1023
Score = 30.3 bits (65), Expect = 1.7
Identities = 21/73 (28%), Positives = 26/73 (35%)
Frame = -1
Query: 443 QCEHVLQYPEACQTHHASQSGAYQLQRTITFY*CG*RGKGEVSCGYGTDPFRSSLRGTYC 264
+C V Q P AC + S GA + Y C K V CG G T C
Sbjct: 535 KCPDVTQAPVACTNGYYSGDGATECTLCPAGYSCADATKSPVPCGKGYYSTNGQTSCTEC 594
Query: 263 SRYVLPPKPLSSA 225
S P L ++
Sbjct: 595 SAGFYCPVELGTS 607
>SB_810| Best HMM Match : TAF4 (HMM E-Value=4.7e-31)
Length = 883
Score = 29.9 bits (64), Expect = 2.2
Identities = 17/74 (22%), Positives = 33/74 (44%)
Frame = +3
Query: 429 HVFALDNPSCPCALVTGGRHRSSRLCAVPSSSSPDVKRSTYQRSGVSQSMNVMSLRSCVK 608
HV A +P P + + + +S A+ +SS+P + S Q + + + N S + +
Sbjct: 261 HVIANQHPPAPVSQLQSNSNNASAARAITTSSNPSISTSVLQGNLSTNARNTASPKPVIV 320
Query: 609 RAASPMTAASCSTA 650
+ + S S A
Sbjct: 321 NSQAVSIGNSSSPA 334
>SB_28115| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 698
Score = 29.5 bits (63), Expect = 3.0
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = -1
Query: 245 PKPLSSAVHIRRTPSARTVESRQRSLSSYPNRRYGSWDQ 129
PK SS V+ RT AR ++R++ Y ++YG W Q
Sbjct: 295 PKFFSSIVYYGRT--ARFDYGKRRNMKRYGKKKYGKWRQ 331
>SB_4321| Best HMM Match : Ank (HMM E-Value=0)
Length = 915
Score = 29.1 bits (62), Expect = 3.9
Identities = 17/62 (27%), Positives = 26/62 (41%)
Frame = +2
Query: 77 RYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRANVDDFPLCVHLVSDEYEQLSSEALEAGR 256
R CK K ++R C+G + R+ K D+ +C SDE E + R
Sbjct: 444 RMCKGKGRDETRMCKGEGTDETRMC----KSEGTDETRMCKDEGSDETRMCKDEGTDETR 499
Query: 257 IC 262
+C
Sbjct: 500 MC 501
>SB_5146| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2077
Score = 29.1 bits (62), Expect = 3.9
Identities = 12/55 (21%), Positives = 26/55 (47%)
Frame = +2
Query: 398 GAFGKPQGTVARVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGRQKIYVSKKW 562
G G+P G+V + +++++ +W + E++ A + FP S+ W
Sbjct: 1109 GVDGRPSGSVEILGSRDSFVAIQNGRQWMLDIEESISIAFYVFPNNSLGNTSRNW 1163
>SB_10713| Best HMM Match : Peptidase_C32 (HMM E-Value=3.3)
Length = 615
Score = 28.7 bits (61), Expect = 5.2
Identities = 11/29 (37%), Positives = 21/29 (72%), Gaps = 2/29 (6%)
Frame = +1
Query: 289 RKGSVPYPHET--SPFPRYPHQ*NVIVRW 369
+KGS+ +PH + S +P+YP +++VR+
Sbjct: 101 KKGSIRFPHSSASSDYPQYPEGRDLVVRF 129
>SB_4606| Best HMM Match : HlyIII (HMM E-Value=0.002)
Length = 458
Score = 28.3 bits (60), Expect = 6.8
Identities = 26/92 (28%), Positives = 36/92 (39%)
Frame = +3
Query: 414 LRVL*HVFALDNPSCPCALVTGGRHRSSRLCAVPSSSSPDVKRSTYQRSGVSQSMNVMSL 593
LR+ H+ L P+C V SS + + S D K ++ S S
Sbjct: 97 LRLTSHIRILA-PACGAISVAVSGAISSLVFITYTEKSKDAKDRYFE----SHKSQFDSY 151
Query: 594 RSCVKRAASPMTAASCSTARNMDLSTLGGRFR 689
++ + SPM A C TLGGRFR
Sbjct: 152 FRTIRYSYSPMDIAVCVVGSLFVFKTLGGRFR 183
>SB_29658| Best HMM Match : zf-C3HC4 (HMM E-Value=0.0012)
Length = 450
Score = 28.3 bits (60), Expect = 6.8
Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 15/88 (17%)
Frame = -1
Query: 332 GKGEVSCGYGTDPFRS-SLRGTYCSRYVLPPK----PLSSAVHIRRTPSARTVES----- 183
G + GY P+ + S R Y + LPP+ P SS + ++ P + E+
Sbjct: 359 GNYSATPGYERVPYANGSERNGYYNGTYLPPQGVITPRSSPLTVQEDPMNGSRENGLSNG 418
Query: 182 -----RQRSLSSYPNRRYGSWDQVHPDR 114
RQ SY +RRYG ++ +PD+
Sbjct: 419 HSDSRRQPMRLSYDSRRYGGYEAYYPDQ 446
>SB_19342| Best HMM Match : Keratin_B2 (HMM E-Value=0.41)
Length = 1093
Score = 28.3 bits (60), Expect = 6.8
Identities = 14/53 (26%), Positives = 25/53 (47%)
Frame = +3
Query: 492 SSRLCAVPSSSSPDVKRSTYQRSGVSQSMNVMSLRSCVKRAASPMTAASCSTA 650
+SR P S V + ++G+S + N+ + +SC P + AS S +
Sbjct: 89 TSRTEVTPRHSENHVSNALTLKTGISITRNMQTFKSCTPAQRIPRSTASLSVS 141
>SB_25165| Best HMM Match : Prominin (HMM E-Value=1.1e-05)
Length = 726
Score = 27.9 bits (59), Expect = 9.0
Identities = 9/20 (45%), Positives = 10/20 (50%)
Frame = +1
Query: 400 CVWQASGYCSTCSHWTTHHV 459
C W +G C C HW HV
Sbjct: 79 CYWIRTGCCHLCWHWRPLHV 98
>SB_14136| Best HMM Match : Exonuc_X-T (HMM E-Value=6e-25)
Length = 1597
Score = 27.9 bits (59), Expect = 9.0
Identities = 13/43 (30%), Positives = 25/43 (58%)
Frame = -2
Query: 217 FVGHQVHAQWKVVNVRSLLTQIEDTDLGIRYTPTEPRFRIRFI 89
FVGH + ++V+N+ Q+ DT +G+ + P + +RF+
Sbjct: 465 FVGHGLKKDFRVINILVPKGQVFDT-VGLFHLPRQRYLSLRFL 506
>SB_21723| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1512
Score = 27.9 bits (59), Expect = 9.0
Identities = 11/36 (30%), Positives = 17/36 (47%)
Frame = -2
Query: 118 TEPRFRIRFIFAVPVASRWPAPHGDLYKVTPQPRKH 11
T + R+ + F PH +L+ V P+ RKH
Sbjct: 810 TNKKLRLAYNFCAMCCGNKEHPHANLFLVAPKSRKH 845
>SB_12904| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 696
Score = 27.9 bits (59), Expect = 9.0
Identities = 22/66 (33%), Positives = 29/66 (43%)
Frame = +3
Query: 444 DNPSCPCALVTGGRHRSSRLCAVPSSSSPDVKRSTYQRSGVSQSMNVMSLRSCVKRAASP 623
+ P P A VT G H S PS++ + +T Q S + N R V +ASP
Sbjct: 220 NTPRSPTAHVTNGNHLSPSNPNRPSNAVSGDQATTSQDSCENIKSNETWSRDIVS-SASP 278
Query: 624 MTAASC 641
A SC
Sbjct: 279 HLAVSC 284
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,297,034
Number of Sequences: 59808
Number of extensions: 624339
Number of successful extensions: 2063
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1814
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2061
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1974037988
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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