Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_O24
         (734 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g14320.1 68414.m01697 60S ribosomal protein L10 (RPL10A) / Wi...   314   3e-86
At1g66580.1 68414.m07565 60S ribosomal protein L10 (RPL10C) cont...   314   5e-86
At1g26910.1 68414.m03281 60S ribosomal protein L10 (RPL10B) Near...   313   7e-86
At4g17840.1 68417.m02661 expressed protein                             30   1.4  
At1g33410.1 68414.m04136 expressed protein                             29   2.4  
At5g47870.1 68418.m05914 expressed protein                             29   4.2  
At4g02180.1 68417.m00290 DC1 domain-containing protein contains ...    29   4.2  
At3g59190.1 68416.m06599 F-box family protein contains F-box dom...    29   4.2  
At5g24280.1 68418.m02856 expressed protein ; expression supporte...    28   5.6  
At5g55800.1 68418.m06954 DC1 domain-containing protein contains ...    28   7.4  
At5g20030.1 68418.m02383 agenet domain-containing protein contai...    27   9.8  
At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-pa...    27   9.8  
At1g19510.1 68414.m02430 myb family transcription factor contain...    27   9.8  
At1g07490.1 68414.m00802 expressed protein                             27   9.8  

>At1g14320.1 68414.m01697 60S ribosomal protein L10 (RPL10A) /
           Wilm's tumor suppressor protein-related similar to tumor
           suppressor GI:575354 from [Oryza sativa]
          Length = 220

 Score =  314 bits (772), Expect = 3e-86
 Identities = 145/206 (70%), Positives = 165/206 (80%)
 Frame = +2

Query: 50  MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRANVDDFPLCVHLVSDEYEQL 229
           MGRRPARCYR  K KPYPKSR+CRGVPDPKIRI+D+G KR  VD+FP CVHLVS E E +
Sbjct: 1   MGRRPARCYRQIKGKPYPKSRYCRGVPDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENV 60

Query: 230 SSEALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFG 409
           SSEALEA RI CNKY+VK+ GKD FH+R+R+HPFHV+RINKMLSCAGADRLQTGMRGAFG
Sbjct: 61  SSEALEAARIACNKYMVKSAGKDAFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGAFG 120

Query: 410 KPQGTVARVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGRQKIYVSKKWGFTKYERDE 589
           K  GT ARV IGQ ++SVR  D       EALRRAKFKFPGRQKI VS+KWGFTK+ R +
Sbjct: 121 KALGTCARVAIGQVLLSVRCKDAHGHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFNRAD 180

Query: 590 FEKLREEGRLANDGCIVQYRPEHGPL 667
           F KLR+E R+  DG   ++   HGPL
Sbjct: 181 FTKLRQEKRVVPDGVNAKFLSCHGPL 206


>At1g66580.1 68414.m07565 60S ribosomal protein L10 (RPL10C)
           contains Pfam profile: PF00826: Ribosomal L10
          Length = 221

 Score =  314 bits (770), Expect = 5e-86
 Identities = 144/206 (69%), Positives = 163/206 (79%)
 Frame = +2

Query: 50  MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRANVDDFPLCVHLVSDEYEQL 229
           MGRRPARCYR  K KPYPKSR+CRGVPDPKIRI+D+G KR  VD+FP CVHLVS E E +
Sbjct: 1   MGRRPARCYRQIKGKPYPKSRYCRGVPDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENV 60

Query: 230 SSEALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFG 409
           SSEALEA RI CNKY+VK+ GKD FH+R+R+HPFHV+RINKMLSCAGADRLQTGMRGAFG
Sbjct: 61  SSEALEAARIACNKYMVKSAGKDAFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGAFG 120

Query: 410 KPQGTVARVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGRQKIYVSKKWGFTKYERDE 589
           K  GT ARV IGQ ++SVR  D       EALRRAKFKFPGRQKI VS+KWGFTK+ R E
Sbjct: 121 KALGTCARVAIGQVLLSVRCKDNHGVHAQEALRRAKFKFPGRQKIIVSRKWGFTKFNRAE 180

Query: 590 FEKLREEGRLANDGCIVQYRPEHGPL 667
           + KLR   R+  DG   ++   HGPL
Sbjct: 181 YTKLRAMKRIVPDGVNAKFLSNHGPL 206


>At1g26910.1 68414.m03281 60S ribosomal protein L10 (RPL10B) Nearly
           identical to ribosomal protein L10.e, Wilm's tumor
           suppressor homologue, gi|17682 (Z15157), however
           differences in sequence indicate this is a different
           member of the L10 family
          Length = 221

 Score =  313 bits (769), Expect = 7e-86
 Identities = 144/206 (69%), Positives = 165/206 (80%)
 Frame = +2

Query: 50  MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRANVDDFPLCVHLVSDEYEQL 229
           MGRRPARCYR  K KPYPKSR+CRGVPDPKIRI+D+G KR  VD+FP CVHLVS E E +
Sbjct: 1   MGRRPARCYRQIKGKPYPKSRYCRGVPDPKIRIYDVGMKRKGVDEFPYCVHLVSWEKENV 60

Query: 230 SSEALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFG 409
           SSEALEA RI CNKY+VK+ GKD FH+R+R+HPFHV+RINKMLSCAGADRLQTGMRGAFG
Sbjct: 61  SSEALEAARIACNKYMVKSAGKDAFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGAFG 120

Query: 410 KPQGTVARVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGRQKIYVSKKWGFTKYERDE 589
           K  GT ARV IGQ ++SVR  D       EALRRAKFKFPGRQKI VS+KWGFTK+ R +
Sbjct: 121 KALGTCARVAIGQVLLSVRCKDAHGHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFNRAD 180

Query: 590 FEKLREEGRLANDGCIVQYRPEHGPL 667
           + KLR+E R+  DG   ++   HGPL
Sbjct: 181 YTKLRQEKRIVPDGVNAKFLSCHGPL 206


>At4g17840.1 68417.m02661 expressed protein
          Length = 422

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 19/72 (26%), Positives = 37/72 (51%)
 Frame = +3

Query: 462 CALVTGGRHRSSRLCAVPSSSSPDVKRSTYQRSGVSQSMNVMSLRSCVKRAASPMTAASC 641
           C+  +GG   SS+L   P+ S  D+K+ + +R+     +++  LRS +K ++S    +S 
Sbjct: 24  CSSGSGGFRSSSKLFDSPACSRSDLKKRSGKRNSRLNGLSLEKLRS-IKASSSSAGQSSS 82

Query: 642 STARNMDLSTLG 677
               + D +  G
Sbjct: 83  EVIDDGDAAARG 94


>At1g33410.1 68414.m04136 expressed protein
          Length = 1459

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 4/59 (6%)
 Frame = +2

Query: 131  DP-KIRIFDLGKKRANVDDFPLCVHLVSDEY-EQLSSEALEAGRICCNKYLVK--NCGK 295
            DP K   +  G+  ANV  F L ++L++D Y   +S+   E  RIC  ++++    CGK
Sbjct: 979  DPTKAATYTRGRLWANVFKFTLDLNLLNDAYCAIISNPDEEIKRICLRRFIIVLFECGK 1037


>At5g47870.1 68418.m05914 expressed protein
          Length = 199

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 20/73 (27%), Positives = 30/73 (41%)
 Frame = +2

Query: 311 RMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMSVRSSDRWKAQ 490
           R++L PF  + +N+ + C+G      G+ G     +  V       PI    SS      
Sbjct: 23  RIKLSPFRTVAVNRGVRCSGG-----GVGGGDAGKKKAVPNSNYVVPIDKFSSSSSITRP 77

Query: 491 VIEALRRAKFKFP 529
           +IE LR    K P
Sbjct: 78  LIEILRDLNKKIP 90


>At4g02180.1 68417.m00290 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 989

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
 Frame = +2

Query: 233 SEALEAGRIC--CNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSC 364
           S+A+  G  C  C+ +  K CG+    I+   HP H +++     C
Sbjct: 65  SKAVSVGYYCKSCDFFAHKKCGESSEFIQHPSHPNHTLQLRSSEGC 110


>At3g59190.1 68416.m06599 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 388

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 18/36 (50%), Positives = 19/36 (52%)
 Frame = +2

Query: 164 KRANVDDFPLCVHLVSDEYEQLSSEALEAGRICCNK 271
           K AN  DF + V  V   Y  LSSEALE    CC K
Sbjct: 297 KGANAADFMMGVCNVKTMY--LSSEALEVLTFCCKK 330


>At5g24280.1 68418.m02856 expressed protein ; expression supported by
            MPSS
          Length = 1634

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +2

Query: 209  SDEYEQLSSEALEAGRICCNKYLV 280
            SDEY +  SEA   GR   N++LV
Sbjct: 1431 SDEYRKFQSEAASLGRSITNRFLV 1454


>At5g55800.1 68418.m06954 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 578

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +2

Query: 257 ICCNKYLVKNCGKDQFHIRMRLHPFHVIRI 346
           + C K   K C +  F I    HPFH +R+
Sbjct: 107 LICEKMFHKECVESPFEIIHPSHPFHSLRL 136


>At5g20030.1 68418.m02383 agenet domain-containing protein contains
           Pfam PF05641: Agenet domain
          Length = 326

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 4/83 (4%)
 Frame = -1

Query: 239 PLSSAVHIRRTPSARTVESRQRSLSSYPNRRYGSWDQVHPDRTSISDTVYFCSTGSISLA 60
           PLS  +  +RT S     ++ R+L++YP R      +   DR S++ +V  C   +  L+
Sbjct: 167 PLSVGLK-KRTYSLVEPHNQTRALAAYPPRFREEVKEEEEDRESVASSVGSCCMDTDGLS 225

Query: 59  GAPW*SLQ----SDTTTSKASAG 3
              +  ++    SDT +S    G
Sbjct: 226 AVSFNPIETGNSSDTESSSCGYG 248


>At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-patch
           domain-containing protein / RNA recognition motif
           (RRM)-containing protein KIAA0122 gene , Homo sapiens,
           EMBL:HSDKG02; contains Pfam profiles  PF00076: RNA
           recognition motif. (a.k.a. RRM, RBD, or RNP domain),
           PF01585: G-patch domain, weak hit to PF00641: Zn-finger
           in Ran binding protein and others
          Length = 1105

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = -1

Query: 158 PNRRYG-SWDQVHPDRTSISDTVYFCSTGSISLAGAP 51
           PN R+G S+D  +PD   + D VY    G  +L   P
Sbjct: 53  PNHRFGVSYDDGYPDERLMRDDVYNYPPGHNTLGDLP 89


>At1g19510.1 68414.m02430 myb family transcription factor contains
           PFAM profile: PF00249 myb-like DNA binding domain
          Length = 100

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +2

Query: 125 VPDPKIRIFDLGKKRANVDDFPL 193
           VP PK +  D+G K   +DDF L
Sbjct: 69  VPLPKYKTVDVGSKSRGIDDFDL 91


>At1g07490.1 68414.m00802 expressed protein 
          Length = 107

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +3

Query: 492 SSRLCAVPSSSSPDVKRSTYQRSGVSQSMNVMSL 593
           SS  C+VPSSSS  + RS+ ++   S +    SL
Sbjct: 48  SSTKCSVPSSSSSSISRSSSKKEKGSITQKYSSL 81


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,025,719
Number of Sequences: 28952
Number of extensions: 418038
Number of successful extensions: 1270
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1214
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1270
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1614253080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)