Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_F_O22
(515 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC685.07c |rpl2701|rpl27-1|60S ribosomal protein L27|Schizosac... 157 9e-40
SPCC74.05 |rpl2702|rpl27-2|60S ribosomal protein L27|Schizosacch... 155 5e-39
SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces p... 29 0.55
SPAC144.08 |||DNAJ domain protein Jac1 |Schizosaccharomyces pomb... 28 0.95
SPAC1805.13 |rpl14||60S ribosomal protein L14|Schizosaccharomyce... 27 1.3
SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr... 26 3.8
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po... 26 3.8
SPBC2F12.08c |ceg1|pce1|mRNA guanylyltransferase Ceg1|Schizosacc... 25 5.1
SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||... 25 6.7
SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr... 25 6.7
SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ... 25 6.7
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom... 25 6.7
SPAC26H5.02c |||DNA replication ATPase|Schizosaccharomyces pombe... 25 8.9
>SPBC685.07c |rpl2701|rpl27-1|60S ribosomal protein
L27|Schizosaccharomyces pombe|chr 2|||Manual
Length = 136
Score = 157 bits (381), Expect = 9e-40
Identities = 69/136 (50%), Positives = 96/136 (70%), Gaps = 2/136 (1%)
Frame = +1
Query: 49 MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRKVHKRMGKN 228
M KI+KPGKV L+ GR+AG+K ++++ D+G+ P+GHA VAG++RYP KV K MG
Sbjct: 1 MVKILKPGKVALITRGRFAGKKVVILQAIDQGSKSHPFGHAVVAGVERYPLKVTKSMGAK 60
Query: 229 KIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEK--FSAKDLKDPAKRKKLRFNTRVRFEE 402
+I +RS++KPF+KVVNYNHLMPTRY ++ K +A K+P +R R + FEE
Sbjct: 61 RIARRSRVKPFIKVVNYNHLMPTRYALELDNLKGLITADTFKEPTQRSAARKTVKKTFEE 120
Query: 403 RYKSGKNKWFFQKLRF 450
+Y+SGK+ WFF LRF
Sbjct: 121 KYQSGKSAWFFTPLRF 136
>SPCC74.05 |rpl2702|rpl27-2|60S ribosomal protein
L27|Schizosaccharomyces pombe|chr 3|||Manual
Length = 136
Score = 155 bits (375), Expect = 5e-39
Identities = 67/136 (49%), Positives = 96/136 (70%), Gaps = 2/136 (1%)
Frame = +1
Query: 49 MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRKVHKRMGKN 228
M KI+KPGKV LV GR+AG+K ++++N D+G+ P+GHA VAG++RYP KV K MG
Sbjct: 1 MVKILKPGKVALVTRGRFAGKKVVILQNVDQGSKSHPFGHAVVAGVERYPLKVTKSMGAK 60
Query: 229 KIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEK--FSAKDLKDPAKRKKLRFNTRVRFEE 402
+I KRS++KPF+KV+NYNHLMPTRY ++ K + +P++R + + FEE
Sbjct: 61 RIAKRSRVKPFIKVINYNHLMPTRYALELDNLKGLVTPTTFSEPSQRSAAKKTVKNTFEE 120
Query: 403 RYKSGKNKWFFQKLRF 450
+Y++GK+ WFF LRF
Sbjct: 121 KYQTGKSAWFFTPLRF 136
>SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 195
Score = 28.7 bits (61), Expect = 0.55
Identities = 9/34 (26%), Positives = 21/34 (61%)
Frame = +1
Query: 40 PPSMGKIMKPGKVVLVLSGRYAGRKAIVVKNYDE 141
P + + PG V ++L+GR+ G++ +V+ ++
Sbjct: 45 PTKLRASLAPGTVCILLAGRFRGKRVVVLSQLED 78
>SPAC144.08 |||DNAJ domain protein Jac1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 225
Score = 27.9 bits (59), Expect = 0.95
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = +1
Query: 220 GKNKIHKRSKIKPFVKVVNYNHLMPTRYTVDF-SFEKFSAKDLKDP 354
G + I R K P K+VNYNH + + +F K D+ DP
Sbjct: 28 GNHWIFARFKFYPLNKIVNYNHFHSSSCQSEAKNFYKQFEGDISDP 73
>SPAC1805.13 |rpl14||60S ribosomal protein L14|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 134
Score = 27.5 bits (58), Expect = 1.3
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +1
Query: 55 KIMKPGKVVLVLSGRYAGRKAIVVKNYD 138
+ ++ G+VVLV G Y G+ A++V D
Sbjct: 6 RYVEVGRVVLVTKGEYTGKLAVIVDIVD 33
>SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 872
Score = 25.8 bits (54), Expect = 3.8
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = -3
Query: 351 VFQVFCAKFFKAEVNCITCWHQVIVVYNLDERLY 250
V+QVFC F A+ I +Q++ V NL E Y
Sbjct: 315 VYQVFCTNFPNAQQLIIDNQNQLLKVANLLEPSY 348
>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 897
Score = 25.8 bits (54), Expect = 3.8
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = +2
Query: 125 SRITTKVPPTSHTGMPSSLVSTGT 196
SR+ T +PP S + +P+ +ST +
Sbjct: 177 SRLPTPLPPPSSSSLPTGTISTNS 200
>SPBC2F12.08c |ceg1|pce1|mRNA guanylyltransferase
Ceg1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 402
Score = 25.4 bits (53), Expect = 5.1
Identities = 14/45 (31%), Positives = 19/45 (42%)
Frame = +1
Query: 313 FSFEKFSAKDLKDPAKRKKLRFNTRVRFEERYKSGKNKWFFQKLR 447
+SF F D K+ K K R E Y +N+W F + R
Sbjct: 284 YSFFAFMYVDEKEWEKLKSFNVPLSERIVECYLDDENRWRFLRFR 328
>SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1260
Score = 25.0 bits (52), Expect = 6.7
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +1
Query: 202 KVHKRMGKNKIHKRSKIKPFVKVV 273
K+ KR+G I SK+ P VK+V
Sbjct: 205 KIAKRIGFTDISLSSKLTPMVKIV 228
>SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1024
Score = 25.0 bits (52), Expect = 6.7
Identities = 15/41 (36%), Positives = 18/41 (43%)
Frame = -3
Query: 336 CAKFFKAEVNCITCWHQVIVVYNLDERLYLGPLVDFILSHP 214
CAKF E N + WH YNL R Y + D + P
Sbjct: 772 CAKFSLKETNKTSFWHS---SYNLFNRQYHVDMPDNVSDLP 809
>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1337
Score = 25.0 bits (52), Expect = 6.7
Identities = 11/39 (28%), Positives = 19/39 (48%)
Frame = +1
Query: 307 VDFSFEKFSAKDLKDPAKRKKLRFNTRVRFEERYKSGKN 423
+ F K L DP+ R+K F ++ + +Y+ KN
Sbjct: 150 LQFQIPSNEKKSLDDPSPRRKPSFFSKSNLKRKYRYLKN 188
>SPBC211.03c |||guanyl-nucleotide exchange
factor|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1462
Score = 25.0 bits (52), Expect = 6.7
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = +1
Query: 307 VDFSFEKFSAKDLKDPAKRKKLRFNTRVRFEER 405
VD++ E+F DP+ + NT ++ E+R
Sbjct: 821 VDYAIERFCQFTALDPSSVPGTQLNTAIKVEDR 853
>SPAC26H5.02c |||DNA replication ATPase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 504
Score = 24.6 bits (51), Expect = 8.9
Identities = 14/46 (30%), Positives = 19/46 (41%)
Frame = +1
Query: 250 IKPFVKVVNYNHLMPTRYTVDFSFEKFSAKDLKDPAKRKKLRFNTR 387
+ PF K Y H + T + S KF + K K R +TR
Sbjct: 39 VSPFFKKERYKHHLETNVSSHQSATKFIEPEPSPTKKTKLTRRDTR 84
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,981,456
Number of Sequences: 5004
Number of extensions: 39727
Number of successful extensions: 124
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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