BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fcaL-P02_F_O22 (515 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC685.07c |rpl2701|rpl27-1|60S ribosomal protein L27|Schizosac... 157 9e-40 SPCC74.05 |rpl2702|rpl27-2|60S ribosomal protein L27|Schizosacch... 155 5e-39 SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces p... 29 0.55 SPAC144.08 |||DNAJ domain protein Jac1 |Schizosaccharomyces pomb... 28 0.95 SPAC1805.13 |rpl14||60S ribosomal protein L14|Schizosaccharomyce... 27 1.3 SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr... 26 3.8 SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po... 26 3.8 SPBC2F12.08c |ceg1|pce1|mRNA guanylyltransferase Ceg1|Schizosacc... 25 5.1 SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||... 25 6.7 SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr... 25 6.7 SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ... 25 6.7 SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom... 25 6.7 SPAC26H5.02c |||DNA replication ATPase|Schizosaccharomyces pombe... 25 8.9 >SPBC685.07c |rpl2701|rpl27-1|60S ribosomal protein L27|Schizosaccharomyces pombe|chr 2|||Manual Length = 136 Score = 157 bits (381), Expect = 9e-40 Identities = 69/136 (50%), Positives = 96/136 (70%), Gaps = 2/136 (1%) Frame = +1 Query: 49 MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRKVHKRMGKN 228 M KI+KPGKV L+ GR+AG+K ++++ D+G+ P+GHA VAG++RYP KV K MG Sbjct: 1 MVKILKPGKVALITRGRFAGKKVVILQAIDQGSKSHPFGHAVVAGVERYPLKVTKSMGAK 60 Query: 229 KIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEK--FSAKDLKDPAKRKKLRFNTRVRFEE 402 +I +RS++KPF+KVVNYNHLMPTRY ++ K +A K+P +R R + FEE Sbjct: 61 RIARRSRVKPFIKVVNYNHLMPTRYALELDNLKGLITADTFKEPTQRSAARKTVKKTFEE 120 Query: 403 RYKSGKNKWFFQKLRF 450 +Y+SGK+ WFF LRF Sbjct: 121 KYQSGKSAWFFTPLRF 136 >SPCC74.05 |rpl2702|rpl27-2|60S ribosomal protein L27|Schizosaccharomyces pombe|chr 3|||Manual Length = 136 Score = 155 bits (375), Expect = 5e-39 Identities = 67/136 (49%), Positives = 96/136 (70%), Gaps = 2/136 (1%) Frame = +1 Query: 49 MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRKVHKRMGKN 228 M KI+KPGKV LV GR+AG+K ++++N D+G+ P+GHA VAG++RYP KV K MG Sbjct: 1 MVKILKPGKVALVTRGRFAGKKVVILQNVDQGSKSHPFGHAVVAGVERYPLKVTKSMGAK 60 Query: 229 KIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEK--FSAKDLKDPAKRKKLRFNTRVRFEE 402 +I KRS++KPF+KV+NYNHLMPTRY ++ K + +P++R + + FEE Sbjct: 61 RIAKRSRVKPFIKVINYNHLMPTRYALELDNLKGLVTPTTFSEPSQRSAAKKTVKNTFEE 120 Query: 403 RYKSGKNKWFFQKLRF 450 +Y++GK+ WFF LRF Sbjct: 121 KYQTGKSAWFFTPLRF 136 >SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces pombe|chr 3|||Manual Length = 195 Score = 28.7 bits (61), Expect = 0.55 Identities = 9/34 (26%), Positives = 21/34 (61%) Frame = +1 Query: 40 PPSMGKIMKPGKVVLVLSGRYAGRKAIVVKNYDE 141 P + + PG V ++L+GR+ G++ +V+ ++ Sbjct: 45 PTKLRASLAPGTVCILLAGRFRGKRVVVLSQLED 78 >SPAC144.08 |||DNAJ domain protein Jac1 |Schizosaccharomyces pombe|chr 1|||Manual Length = 225 Score = 27.9 bits (59), Expect = 0.95 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 1/46 (2%) Frame = +1 Query: 220 GKNKIHKRSKIKPFVKVVNYNHLMPTRYTVDF-SFEKFSAKDLKDP 354 G + I R K P K+VNYNH + + +F K D+ DP Sbjct: 28 GNHWIFARFKFYPLNKIVNYNHFHSSSCQSEAKNFYKQFEGDISDP 73 >SPAC1805.13 |rpl14||60S ribosomal protein L14|Schizosaccharomyces pombe|chr 1|||Manual Length = 134 Score = 27.5 bits (58), Expect = 1.3 Identities = 11/28 (39%), Positives = 18/28 (64%) Frame = +1 Query: 55 KIMKPGKVVLVLSGRYAGRKAIVVKNYD 138 + ++ G+VVLV G Y G+ A++V D Sbjct: 6 RYVEVGRVVLVTKGEYTGKLAVIVDIVD 33 >SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr 1|||Manual Length = 872 Score = 25.8 bits (54), Expect = 3.8 Identities = 14/34 (41%), Positives = 19/34 (55%) Frame = -3 Query: 351 VFQVFCAKFFKAEVNCITCWHQVIVVYNLDERLY 250 V+QVFC F A+ I +Q++ V NL E Y Sbjct: 315 VYQVFCTNFPNAQQLIIDNQNQLLKVANLLEPSY 348 >SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces pombe|chr 1|||Manual Length = 897 Score = 25.8 bits (54), Expect = 3.8 Identities = 9/24 (37%), Positives = 16/24 (66%) Frame = +2 Query: 125 SRITTKVPPTSHTGMPSSLVSTGT 196 SR+ T +PP S + +P+ +ST + Sbjct: 177 SRLPTPLPPPSSSSLPTGTISTNS 200 >SPBC2F12.08c |ceg1|pce1|mRNA guanylyltransferase Ceg1|Schizosaccharomyces pombe|chr 2|||Manual Length = 402 Score = 25.4 bits (53), Expect = 5.1 Identities = 14/45 (31%), Positives = 19/45 (42%) Frame = +1 Query: 313 FSFEKFSAKDLKDPAKRKKLRFNTRVRFEERYKSGKNKWFFQKLR 447 +SF F D K+ K K R E Y +N+W F + R Sbjct: 284 YSFFAFMYVDEKEWEKLKSFNVPLSERIVECYLDDENRWRFLRFR 328 >SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||Manual Length = 1260 Score = 25.0 bits (52), Expect = 6.7 Identities = 11/24 (45%), Positives = 15/24 (62%) Frame = +1 Query: 202 KVHKRMGKNKIHKRSKIKPFVKVV 273 K+ KR+G I SK+ P VK+V Sbjct: 205 KIAKRIGFTDISLSSKLTPMVKIV 228 >SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr 3|||Manual Length = 1024 Score = 25.0 bits (52), Expect = 6.7 Identities = 15/41 (36%), Positives = 18/41 (43%) Frame = -3 Query: 336 CAKFFKAEVNCITCWHQVIVVYNLDERLYLGPLVDFILSHP 214 CAKF E N + WH YNL R Y + D + P Sbjct: 772 CAKFSLKETNKTSFWHS---SYNLFNRQYHVDMPDNVSDLP 809 >SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr 1|||Manual Length = 1337 Score = 25.0 bits (52), Expect = 6.7 Identities = 11/39 (28%), Positives = 19/39 (48%) Frame = +1 Query: 307 VDFSFEKFSAKDLKDPAKRKKLRFNTRVRFEERYKSGKN 423 + F K L DP+ R+K F ++ + +Y+ KN Sbjct: 150 LQFQIPSNEKKSLDDPSPRRKPSFFSKSNLKRKYRYLKN 188 >SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharomyces pombe|chr 2|||Manual Length = 1462 Score = 25.0 bits (52), Expect = 6.7 Identities = 10/33 (30%), Positives = 18/33 (54%) Frame = +1 Query: 307 VDFSFEKFSAKDLKDPAKRKKLRFNTRVRFEER 405 VD++ E+F DP+ + NT ++ E+R Sbjct: 821 VDYAIERFCQFTALDPSSVPGTQLNTAIKVEDR 853 >SPAC26H5.02c |||DNA replication ATPase|Schizosaccharomyces pombe|chr 1|||Manual Length = 504 Score = 24.6 bits (51), Expect = 8.9 Identities = 14/46 (30%), Positives = 19/46 (41%) Frame = +1 Query: 250 IKPFVKVVNYNHLMPTRYTVDFSFEKFSAKDLKDPAKRKKLRFNTR 387 + PF K Y H + T + S KF + K K R +TR Sbjct: 39 VSPFFKKERYKHHLETNVSSHQSATKFIEPEPSPTKKTKLTRRDTR 84 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 1,981,456 Number of Sequences: 5004 Number of extensions: 39727 Number of successful extensions: 124 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 120 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 122 length of database: 2,362,478 effective HSP length: 68 effective length of database: 2,022,206 effective search space used: 208287218 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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