Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_F_O20
(779 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0547 + 4032161-4032418,4032747-4032953,4033216-4033569 87 1e-17
06_03_1041 - 27086661-27086981,27087089-27087295,27087398-270876... 79 3e-15
08_01_0462 + 4072369-4072630,4072732-4072814,4072937-4073020,407... 69 6e-12
07_03_1560 - 27730241-27730336,27730471-27730644,27730746-277309... 63 3e-10
08_01_0629 + 5464282-5464304,5464367-5465528 30 2.4
12_01_0772 - 7016864-7017012,7017114-7017262,7017346-7017489,701... 29 3.1
08_02_1445 + 27149983-27150382,27151203-27151612,27151955-27152818 29 5.5
02_03_0349 + 18010414-18014283 28 7.2
09_02_0257 + 6355876-6356444,6356690-6357136,6357231-6359166 28 9.6
03_01_0581 + 4310136-4310186,4310940-4311144,4311245-4311410,431... 28 9.6
>02_01_0547 + 4032161-4032418,4032747-4032953,4033216-4033569
Length = 272
Score = 87.0 bits (206), Expect = 1e-17
Identities = 67/218 (30%), Positives = 105/218 (48%), Gaps = 10/218 (4%)
Frame = +1
Query: 154 LQGIRLVTFDATNTLLKFKMVPSQYYTKIARTYGYRGSESDAQNKMRENFKMMWEQ---- 321
L +RLVT D T TL+ +K YY A++ G + +M E FK + +
Sbjct: 4 LSKLRLVTVDVTGTLIAYKGQLGDYYCMAAKSAGMPCPD---YKRMHEGFKAAYTEMTVR 60
Query: 322 HPNFGRNSILWE-EWWRQVVKLTL--QDHLPEGADTRSLGNTLINDFKTSKCWDVAAGSD 492
HP FG S + +WW+ VK + + + A + + + F +S + V +
Sbjct: 61 HPCFGHASNMPNIDWWKMCVKDSFIRAGYEYDDATFEKIFRRIYSTFGSSAPYSVFPDAQ 120
Query: 493 TLLQXXXXXXXXXXXXSNSDPRLYDI-LQNLGLSK--YFDFILTSYDCGFSKPDSRIFQE 663
L+ SN++ R D+ L LGL++ +DF + S G KPD R+++
Sbjct: 121 QFLRWLRNNGCTVGIVSNAEYRYKDVVLPALGLNEGSEWDFGVFSGIVGVEKPDRRMYEA 180
Query: 664 ALLRCKEITKASESLHIGDDLXKDYIGARESGWHALLI 777
AL + A+E+LHIGD + KDY AR +G HALL+
Sbjct: 181 ALEMAGGVA-AAEALHIGDSMRKDYAPARRAGMHALLL 217
>06_03_1041 -
27086661-27086981,27087089-27087295,27087398-27087675,
27088360-27088471
Length = 305
Score = 79.4 bits (187), Expect = 3e-15
Identities = 65/215 (30%), Positives = 98/215 (45%), Gaps = 10/215 (4%)
Frame = +1
Query: 163 IRLVTFDATNTLLKFKMVPSQYYTKIARTYGYRGSESDAQNKMRENFKM----MWEQHPN 330
+RL+T D T TLL +K YY A+ G +M E FK+ M Q+P
Sbjct: 51 LRLITVDVTGTLLAYKGQLGDYYCMAAKA---AGKPCPDYQRMHEGFKLAYTEMARQYPC 107
Query: 331 FGRNSILWE-EWWRQVVK--LTLQDHLPEGADTRSLGNTLINDFKTSKCWDVAAGSDTLL 501
FG + + +WWR VK + + + + + F +S + V + +
Sbjct: 108 FGFAAKMPNIDWWRMCVKDSFVKAGYEYDEETFEKIFKRIYSSFGSSAPYSVFPDAQPFM 167
Query: 502 QXXXXXXXXXXXXSNSDPRLYD-ILQNLGLSK--YFDFILTSYDCGFSKPDSRIFQEALL 672
+ SN++ R D IL LGL++ +DF + S G KPD I++ AL
Sbjct: 168 RWLRGKGLTVGIVSNAEYRYKDVILPALGLNQGSEWDFGVFSGIVGVEKPDPSIYRIALE 227
Query: 673 RCKEITKASESLHIGDDLXKDYIGARESGWHALLI 777
++ E+LHIGD + KDY AR G HALL+
Sbjct: 228 MAGKVAP-EEALHIGDSMRKDYTPARSIGMHALLL 261
>08_01_0462 +
4072369-4072630,4072732-4072814,4072937-4073020,
4073509-4073584,4073712-4073784,4073878-4073951,
4074158-4074251,4074374-4074443
Length = 271
Score = 68.5 bits (160), Expect = 6e-12
Identities = 53/194 (27%), Positives = 82/194 (42%), Gaps = 1/194 (0%)
Frame = +1
Query: 181 DATNTLLKFKMVPSQYYTKIARTYGYRGSESDAQNKMRENFKMMWEQHPNF-GRNSILWE 357
DA TLL+ +Q Y + R YG SE + + F W + + G W
Sbjct: 64 DAGGTLLQLARPVAQTYASLGRRYGMSKSEESIKEGFKRAFSAPWPKTLRYQGDGRPFWR 123
Query: 358 EWWRQVVKLTLQDHLPEGADTRSLGNTLINDFKTSKCWDVAAGSDTLLQXXXXXXXXXXX 537
+ + T D+ E + + G+ W + AG+ L+
Sbjct: 124 IVVAEATECTNNDYFEEVYEYYAHGD----------AWRLPAGAYETLRDLKDAGVKLAV 173
Query: 538 XSNSDPRLYDILQNLGLSKYFDFILTSYDCGFSKPDSRIFQEALLRCKEITKASESLHIG 717
SN D RL +L++L +S FD I+ S + G KP IF+ AL + +AS+++H+G
Sbjct: 174 VSNFDTRLRKLLKDLHVSDMFDAIVVSSEVGHEKPAPEIFKRALDQIG--VEASKAVHVG 231
Query: 718 DDLXKDYIGARESG 759
DD D GA G
Sbjct: 232 DDETADKAGANAIG 245
>07_03_1560 -
27730241-27730336,27730471-27730644,27730746-27730907,
27730993-27731101,27732268-27732374,27732875-27733141
Length = 304
Score = 62.9 bits (146), Expect = 3e-10
Identities = 54/209 (25%), Positives = 86/209 (41%), Gaps = 6/209 (2%)
Frame = +1
Query: 166 RLVTFDATNTLLKFKMVPSQYYTKIARTYGYRGSESDAQNKMRENFKMMWEQHPNFGRNS 345
+ + DA TLL +Q Y I YG SE + + R + W GR+
Sbjct: 70 KAILVDAAGTLLAPTEPMAQVYRTIGEKYGVNYSEDEILMRYRRAYAQPW------GRSR 123
Query: 346 ILWEE----WWRQVVKLTLQDHLPEGADTRSLGNTLINDFKTSKCWDVA-AGSDTLLQXX 510
+ + + +W+ +V + G L + T+K W + + + +
Sbjct: 124 LRYVDDGRPFWQHIVSSST------GCSDLQYFEELYQYYTTAKAWQLCDPDAKYVFEAL 177
Query: 511 XXXXXXXXXXSNSDPRLYDILQNLGLSKYFDFILTSYDCGFSKPDSRIFQEALLRCKEI- 687
SN D RL +LQ L +FD + S + KP+ IF +A C+ +
Sbjct: 178 RKAGVKTAVVSNFDTRLRPLLQALNCDHWFDAVAVSAEVAAEKPNPTIFLKA---CEFLG 234
Query: 688 TKASESLHIGDDLXKDYIGARESGWHALL 774
K E++HIGDD D GAR++G A L
Sbjct: 235 VKPEEAVHIGDDRRNDLWGARDAGCDAWL 263
>08_01_0629 + 5464282-5464304,5464367-5465528
Length = 394
Score = 29.9 bits (64), Expect = 2.4
Identities = 14/44 (31%), Positives = 20/44 (45%)
Frame = +1
Query: 190 NTLLKFKMVPSQYYTKIARTYGYRGSESDAQNKMRENFKMMWEQ 321
NTLL+ K P TK Y G + D+Q ++ WE+
Sbjct: 192 NTLLEIKQHPQANQTKGKHVINYWGFKKDSQQRLNNGCTTDWEK 235
>12_01_0772 -
7016864-7017012,7017114-7017262,7017346-7017489,
7017549-7017719,7017907-7018020,7018115-7018215,
7018296-7018416,7018601-7018830,7019203-7019265,
7019528-7019570,7019860-7019953,7020428-7020501,
7020616-7020744,7020940-7021017,7021353-7021639
Length = 648
Score = 29.5 bits (63), Expect = 3.1
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +1
Query: 301 FKMMWEQHPNFGRNSILWEEWWRQVVKLTLQDHLPEGADTRSL 429
F + W + N G + +L +W RQ + LQ+ L E A++ L
Sbjct: 134 FGLRWPRCDNAGHDGLLTVDWQRQYWEKHLQECLDEAAESALL 176
>08_02_1445 + 27149983-27150382,27151203-27151612,27151955-27152818
Length = 557
Score = 28.7 bits (61), Expect = 5.5
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = -1
Query: 482 AATSQHLEVLKSLIKVFPKLLVSAPS 405
AA HLEVLK L++ FP L ++ S
Sbjct: 127 AAKQGHLEVLKELLQAFPALAMTTNS 152
>02_03_0349 + 18010414-18014283
Length = 1289
Score = 28.3 bits (60), Expect = 7.2
Identities = 13/45 (28%), Positives = 24/45 (53%)
Frame = +1
Query: 586 LSKYFDFILTSYDCGFSKPDSRIFQEALLRCKEITKASESLHIGD 720
++K FD++ + + G KP ++ L + K + A + HIGD
Sbjct: 22 INKAFDYLKDNKEAGGLKPTRERLEKLLPQIKVVLDAVDMEHIGD 66
>09_02_0257 + 6355876-6356444,6356690-6357136,6357231-6359166
Length = 983
Score = 27.9 bits (59), Expect = 9.6
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +3
Query: 489 RYIAANNKKEGDSYRSDFEFRPSSLRYSSKFR 584
RYI +K+ D ++SD+ + PS + +S FR
Sbjct: 146 RYIPCVLRKKWDDWKSDWFYTPSPTKRASDFR 177
>03_01_0581 +
4310136-4310186,4310940-4311144,4311245-4311410,
4312035-4312257,4312891-4312967,4313091-4313278,
4313363-4313457,4313674-4313807,4313914-4314024,
4314304-4314619,4314919-4315040,4315183-4315293,
4315824-4316012,4316105-4316263,4316449-4316530,
4317080-4317190
Length = 779
Score = 27.9 bits (59), Expect = 9.6
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +1
Query: 301 FKMMWEQHPNFGRNSILWEEWWRQVVKLTLQD 396
+K+ +QH N GR L EE R +K +L D
Sbjct: 578 WKLDSDQHYNIGRQGTLTEETGRSFIKRSLSD 609
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,289,063
Number of Sequences: 37544
Number of extensions: 374280
Number of successful extensions: 823
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 801
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 817
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2091906552
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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