Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_F_O20
(779 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_28682| Best HMM Match : Hydrolase (HMM E-Value=1.2e-19) 113 2e-25
SB_33016| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 6e-04
SB_18334| Best HMM Match : CSE2 (HMM E-Value=4.9) 31 1.0
SB_18016| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.0
SB_1419| Best HMM Match : CSE2 (HMM E-Value=6.1) 30 2.4
SB_40969| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.2
SB_10954| Best HMM Match : Activin_recp (HMM E-Value=0.12) 29 5.6
SB_57924| Best HMM Match : PG_binding_1 (HMM E-Value=3.5) 29 5.6
SB_45911| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.6
SB_5938| Best HMM Match : Activin_recp (HMM E-Value=0.28) 29 5.6
SB_3171| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.6
SB_2279| Best HMM Match : PG_binding_1 (HMM E-Value=3.5) 29 5.6
SB_36035| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.4
SB_7382| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.8
>SB_28682| Best HMM Match : Hydrolase (HMM E-Value=1.2e-19)
Length = 219
Score = 113 bits (272), Expect = 2e-25
Identities = 70/206 (33%), Positives = 105/206 (50%), Gaps = 2/206 (0%)
Frame = +1
Query: 166 RLVTFDATNTLLKFK-MVPSQYYTKIARTYGYRGSESDAQNKMRENFKMMWEQHPNFGR- 339
RL+T DATNTL + + V QY GY+ S ++ + R+ +KM W ++PNFG
Sbjct: 3 RLITLDATNTLFRVRGSVGYQYAKSAMEQLGYQLSAANIDKEFRKAYKMYWIKYPNFGAA 62
Query: 340 NSILWEEWWRQVVKLTLQDHLPEGADTRSLGNTLINDFKTSKCWDVAAGSDTLLQXXXXX 519
+ I ++WW +VV+ T ++ + + L N F T W+V +L
Sbjct: 63 HRITSKQWWGKVVRKTFDGNI-HSEEIEAFSVHLYNHFATGDPWEVFPEVMHVLTQLKGE 121
Query: 520 XXXXXXXSNSDPRLYDILQNLGLSKYFDFILTSYDCGFSKPDSRIFQEALLRCKEITKAS 699
SN D RL IL +L L ++F FILTS KP IF+ AL +K
Sbjct: 122 EVTLGVISNFDERLEQILDSLKLREFFSFILTSRKVDVCKPSPEIFRLALKMSGVHSK-- 179
Query: 700 ESLHIGDDLXKDYIGARESGWHALLI 777
E+LH+GD+L D +GA +G+ +LL+
Sbjct: 180 EALHVGDNLELDVLGASSAGFSSLLL 205
>SB_33016| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 238
Score = 41.9 bits (94), Expect = 6e-04
Identities = 55/206 (26%), Positives = 88/206 (42%), Gaps = 4/206 (1%)
Frame = +1
Query: 163 IRLVTFDATNTLLKFKMVPSQYYTKIARTYGYRGSESDAQNKMRENFKMMWEQHPNFGRN 342
++ + FD NTL++ + K+ + SE A E +++ E +
Sbjct: 3 VKGLLFDFDNTLVQTNKSDLEALEKVKQWLMETLSEEQALAATSEFSRLLHEHWVDPDGT 62
Query: 343 SILWEEWWRQVVKLTLQDHLPEGADTRSLGNTLINDFKTS--KCWDVAAGSDTLLQXXXX 516
+ E WR + L + LPE + G L + ++ S K + G LL+
Sbjct: 63 KSVHE--WRTSLWLKAINILPENITNITAGE-LYSFWRESRVKGLGIPTGVQFLLEGLGH 119
Query: 517 XXXXXXXXSNSDPRLY-DILQNLGLSKYFDFILTSYDCGFSKPDSRIFQEALLRCKEITK 693
+NSDP + + L+ + KYFD I+ S + +KP IFQ A C I
Sbjct: 120 QYKMAII-TNSDPVIQKEKLEFCKVEKYFDAIIISGEQPEAKPCVSIFQTA---CDAIGL 175
Query: 694 ASES-LHIGDDLXKDYIGARESGWHA 768
A E + IGD+L D G R++G A
Sbjct: 176 APEDCVMIGDNLVDDIQGGRDAGVRA 201
>SB_18334| Best HMM Match : CSE2 (HMM E-Value=4.9)
Length = 296
Score = 31.1 bits (67), Expect = 1.0
Identities = 13/49 (26%), Positives = 21/49 (42%)
Frame = +1
Query: 358 EWWRQVVKLTLQDHLPEGADTRSLGNTLINDFKTSKCWDVAAGSDTLLQ 504
EWWR + L+ + +ND+ + CWD A TL++
Sbjct: 76 EWWRHIDNLSQRRRSSAKVSLDEQSLVELNDYFANLCWDTAYEQPTLVE 124
>SB_18016| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 573
Score = 31.1 bits (67), Expect = 1.0
Identities = 13/49 (26%), Positives = 21/49 (42%)
Frame = +1
Query: 358 EWWRQVVKLTLQDHLPEGADTRSLGNTLINDFKTSKCWDVAAGSDTLLQ 504
EWWR + L+ + +ND+ + CWD A TL++
Sbjct: 110 EWWRHIDNLSQRRRSSAKVSLDEQSLVELNDYFANLCWDTAYEQPTLVE 158
>SB_1419| Best HMM Match : CSE2 (HMM E-Value=6.1)
Length = 270
Score = 29.9 bits (64), Expect = 2.4
Identities = 12/49 (24%), Positives = 21/49 (42%)
Frame = +1
Query: 358 EWWRQVVKLTLQDHLPEGADTRSLGNTLINDFKTSKCWDVAAGSDTLLQ 504
+WWR + L+ + +ND+ + CWD A TL++
Sbjct: 50 DWWRHIDNLSQRRRSSAKVSLDEQSLVELNDYFANLCWDTAYEQPTLVE 98
>SB_40969| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 374
Score = 29.1 bits (62), Expect = 4.2
Identities = 18/46 (39%), Positives = 23/46 (50%)
Frame = -3
Query: 366 PPFFPEDRIPSKIRMLFPHHFKVFPHLILSITFASPVTICTCNLCV 229
PPF P R+PS+ R P + P LS + C+CNLCV
Sbjct: 260 PPFSPY-RLPSRARCSPPGYPSEEPRWRLSAV----TSFCSCNLCV 300
>SB_10954| Best HMM Match : Activin_recp (HMM E-Value=0.12)
Length = 167
Score = 28.7 bits (61), Expect = 5.6
Identities = 8/19 (42%), Positives = 13/19 (68%)
Frame = +1
Query: 316 EQHPNFGRNSILWEEWWRQ 372
+QHPN + SI ++ WW +
Sbjct: 94 QQHPNLDKESIAYKTWWAE 112
>SB_57924| Best HMM Match : PG_binding_1 (HMM E-Value=3.5)
Length = 581
Score = 28.7 bits (61), Expect = 5.6
Identities = 8/19 (42%), Positives = 13/19 (68%)
Frame = +1
Query: 316 EQHPNFGRNSILWEEWWRQ 372
+QHPN + SI ++ WW +
Sbjct: 250 QQHPNLDKESIAYKTWWAE 268
>SB_45911| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 287
Score = 28.7 bits (61), Expect = 5.6
Identities = 8/19 (42%), Positives = 13/19 (68%)
Frame = +1
Query: 316 EQHPNFGRNSILWEEWWRQ 372
+QHPN + SI ++ WW +
Sbjct: 89 QQHPNLDKESIAYKTWWAE 107
>SB_5938| Best HMM Match : Activin_recp (HMM E-Value=0.28)
Length = 287
Score = 28.7 bits (61), Expect = 5.6
Identities = 8/19 (42%), Positives = 13/19 (68%)
Frame = +1
Query: 316 EQHPNFGRNSILWEEWWRQ 372
+QHPN + SI ++ WW +
Sbjct: 89 QQHPNLDKESIAYKTWWAE 107
>SB_3171| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 851
Score = 28.7 bits (61), Expect = 5.6
Identities = 8/19 (42%), Positives = 13/19 (68%)
Frame = +1
Query: 316 EQHPNFGRNSILWEEWWRQ 372
+QHPN + SI ++ WW +
Sbjct: 737 QQHPNLDKESIAYKTWWAE 755
>SB_2279| Best HMM Match : PG_binding_1 (HMM E-Value=3.5)
Length = 351
Score = 28.7 bits (61), Expect = 5.6
Identities = 8/19 (42%), Positives = 13/19 (68%)
Frame = +1
Query: 316 EQHPNFGRNSILWEEWWRQ 372
+QHPN + SI ++ WW +
Sbjct: 20 QQHPNLDKESIAYKTWWAE 38
>SB_36035| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 234
Score = 28.3 bits (60), Expect = 7.4
Identities = 8/19 (42%), Positives = 13/19 (68%)
Frame = +1
Query: 316 EQHPNFGRNSILWEEWWRQ 372
+QHPN + SI ++ WW +
Sbjct: 141 QQHPNLDKESIAFKTWWAE 159
>SB_7382| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1120
Score = 27.9 bits (59), Expect = 9.8
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = -3
Query: 351 EDRIPSKIRMLFPHHFKVFPHLILSITFASPVTICTCNLCVILRGY 214
+DR + + PHH H++ I A T+C L +L+GY
Sbjct: 1040 DDRQKGRTKYTGPHHVLTVDHVLGMIADAEKCTVCGTQL--LLQGY 1083
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,672,060
Number of Sequences: 59808
Number of extensions: 441755
Number of successful extensions: 899
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 853
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 896
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2131907602
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -