Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_O19
         (672 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc...    29   0.81 
SPAC4G8.08 |||iron ion transporter |Schizosaccharomyces pombe|ch...    27   2.5  
SPAC23C11.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    27   3.3  
SPAC56E4.06c |ggt2||gamma-glutamyltranspeptidase Ggt2|Schizosacc...    25   9.9  
SPAC1006.01 |psp3||serine protease Psp3 |Schizosaccharomyces pom...    25   9.9  

>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1679

 Score = 28.7 bits (61), Expect = 0.81
 Identities = 9/29 (31%), Positives = 20/29 (68%)
 Frame = +1

Query: 247 WFLQSPPSLKPRILLLSSWMLLTVSPSTL 333
           + L++PPS++PR++  + W++    P+ L
Sbjct: 284 FILEAPPSMQPRLIQFTRWVVDKADPNFL 312


>SPAC4G8.08 |||iron ion transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 271

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 11/37 (29%), Positives = 17/37 (45%)
 Frame = +1

Query: 46  YRPK*TNWWCCFQSSRSPSPSQAWWLLWPTALSCLEL 156
           Y P   +WW C++ S+     Q+ W +   A  C  L
Sbjct: 146 YLPTTVSWWVCYEESKKYLQKQSNWDISVIAPICSAL 182


>SPAC23C11.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 110

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 13/40 (32%), Positives = 24/40 (60%)
 Frame = +1

Query: 79  FQSSRSPSPSQAWWLLWPTALSCLELVRCPSTAPVWSTDR 198
           + +S +PS +Q+  +L    +  + +VRCPS  P++ T R
Sbjct: 56  YLNSAAPSKAQSHPVLLAAGVGGI-VVRCPSRKPIYRTTR 94


>SPAC56E4.06c |ggt2||gamma-glutamyltranspeptidase
           Ggt2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 611

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 10/33 (30%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
 Frame = +3

Query: 288 PAVV--LDAVNGVPLDTPEVVAARAAHFQAKAL 380
           PA++  L+ ++G PL+TP +   +  H + +A+
Sbjct: 325 PALIEGLNILDGYPLNTPSLAFPKRLHLEVEAM 357


>SPAC1006.01 |psp3||serine protease Psp3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 451

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +3

Query: 303 DAVNGVPLDTPEVVA 347
           D +NG+P DTP V+A
Sbjct: 432 DLLNGIPEDTPNVLA 446


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,254,200
Number of Sequences: 5004
Number of extensions: 36507
Number of successful extensions: 89
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)