Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_F_O19
(672 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_2155| Best HMM Match : RepA1_leader (HMM E-Value=0.86) 33 0.16
SB_2277| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.21
SB_49841| Best HMM Match : Extensin_2 (HMM E-Value=0.29) 30 1.5
SB_105| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.5
SB_42203| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.0
SB_17753| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.0
SB_8952| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
SB_8320| Best HMM Match : p450 (HMM E-Value=0) 28 7.9
>SB_2155| Best HMM Match : RepA1_leader (HMM E-Value=0.86)
Length = 427
Score = 33.5 bits (73), Expect = 0.16
Identities = 11/25 (44%), Positives = 19/25 (76%)
Frame = +2
Query: 53 QNEQIGGVVFNLRGRRRQAKLGGSF 127
+NE+ G++ N+RG+ ++ KLGG F
Sbjct: 79 ENEEYAGIILNVRGKNKKEKLGGLF 103
>SB_2277| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 87
Score = 33.1 bits (72), Expect = 0.21
Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Frame = +1
Query: 64 NWWCCFQSSRSPSPSQA-WWLLWPTALSCL 150
NWW + + S P Q WWL W +L CL
Sbjct: 36 NWWLAWNIALSCHPRQYNWWLTWNLSLLCL 65
Score = 31.1 bits (67), Expect = 0.84
Identities = 13/29 (44%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
Frame = +1
Query: 64 NWWCCFQSSRSPSPSQA-WWLLWPTALSC 147
NWW + S Q WWL W ALSC
Sbjct: 19 NWWLAWNPDLSCLMRQYNWWLAWNIALSC 47
>SB_49841| Best HMM Match : Extensin_2 (HMM E-Value=0.29)
Length = 1841
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/30 (43%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Frame = +1
Query: 64 NWWCCFQSSRSPSPSQA-WWLLWPTALSCL 150
NWW + S Q WWL W AL CL
Sbjct: 532 NWWLAWNPDLSCLMRQYNWWLAWHLALLCL 561
Score = 29.9 bits (64), Expect = 2.0
Identities = 12/30 (40%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Frame = +1
Query: 64 NWWCCFQSSRSPSPSQA-WWLLWPTALSCL 150
NWW + + + Q WWL W AL CL
Sbjct: 1324 NWWLAWNPALLCNSRQYNWWLAWNPALLCL 1353
Score = 28.3 bits (60), Expect = 6.0
Identities = 12/30 (40%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Frame = +1
Query: 64 NWWCCFQSSRSPSPSQA-WWLLWPTALSCL 150
NWW + + Q WWL W AL CL
Sbjct: 1154 NWWLAWNPALLCLMRQYNWWLAWNPALLCL 1183
Score = 28.3 bits (60), Expect = 6.0
Identities = 12/30 (40%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Frame = +1
Query: 64 NWWCCFQSSRSPSPSQA-WWLLWPTALSCL 150
NWW + + Q WWL W AL CL
Sbjct: 1171 NWWLAWNPALLCLMRQYNWWLAWNLALLCL 1200
Score = 28.3 bits (60), Expect = 6.0
Identities = 12/30 (40%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Frame = +1
Query: 64 NWWCCFQSSRSPSPSQA-WWLLWPTALSCL 150
NWW + + Q WWL W AL CL
Sbjct: 1205 NWWLAWNPALLCLMRQYNWWLAWNPALLCL 1234
Score = 28.3 bits (60), Expect = 6.0
Identities = 12/30 (40%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Frame = +1
Query: 64 NWWCCFQSSRSPSPSQA-WWLLWPTALSCL 150
NWW + + Q WWL W AL CL
Sbjct: 1222 NWWLAWNPALLCLMRQYNWWLAWNPALLCL 1251
Score = 28.3 bits (60), Expect = 6.0
Identities = 12/30 (40%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Frame = +1
Query: 64 NWWCCFQSSRSPSPSQA-WWLLWPTALSCL 150
NWW + + Q WWL W AL CL
Sbjct: 1239 NWWLAWNPALLCLMRQYNWWLAWNPALLCL 1268
Score = 28.3 bits (60), Expect = 6.0
Identities = 12/30 (40%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Frame = +1
Query: 64 NWWCCFQSSRSPSPSQA-WWLLWPTALSCL 150
NWW + + Q WWL W AL CL
Sbjct: 1256 NWWLAWNPALLCLMRQYNWWLAWNPALLCL 1285
Score = 28.3 bits (60), Expect = 6.0
Identities = 12/30 (40%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Frame = +1
Query: 64 NWWCCFQSSRSPSPSQA-WWLLWPTALSCL 150
NWW + + Q WWL W AL CL
Sbjct: 1273 NWWLAWNPALLCLMRQYNWWLAWNPALLCL 1302
Score = 28.3 bits (60), Expect = 6.0
Identities = 12/30 (40%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Frame = +1
Query: 64 NWWCCFQSSRSPSPSQA-WWLLWPTALSCL 150
NWW + + Q WWL W AL CL
Sbjct: 1290 NWWLAWNPALLCLMRQYNWWLAWNPALLCL 1319
Score = 27.9 bits (59), Expect = 7.9
Identities = 12/30 (40%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Frame = +1
Query: 64 NWWCCFQSSRSPSPSQA-WWLLWPTALSCL 150
NWW + + Q WWL W AL CL
Sbjct: 1188 NWWLAWNLALLCLMRQYNWWLAWNPALLCL 1217
>SB_105| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2982
Score = 28.7 bits (61), Expect = 4.5
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +1
Query: 88 SRSPSPSQAWWLLWPTALSCLELVRCPSTAPV 183
SR P+ W P ALS +E++ P T+PV
Sbjct: 2672 SRDRPPTMVWRYREPRALSAVEVLPLPFTSPV 2703
>SB_42203| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 228
Score = 28.3 bits (60), Expect = 6.0
Identities = 12/30 (40%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Frame = +1
Query: 64 NWWCCFQSSRSPSPSQA-WWLLWPTALSCL 150
NWW + + Q WWL W AL CL
Sbjct: 158 NWWLAWNPALLCLMRQYNWWLAWNPALLCL 187
Score = 28.3 bits (60), Expect = 6.0
Identities = 12/30 (40%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Frame = +1
Query: 64 NWWCCFQSSRSPSPSQA-WWLLWPTALSCL 150
NWW + + Q WWL W AL CL
Sbjct: 175 NWWLAWNPALLCLMRQYNWWLAWNLALLCL 204
>SB_17753| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 243
Score = 28.3 bits (60), Expect = 6.0
Identities = 9/31 (29%), Positives = 16/31 (51%)
Frame = -2
Query: 320 DTVNSIQDDSRRMRGLREGGDCRNHTGSDEC 228
D + + DD+ G R DC+N+ ++ C
Sbjct: 70 DNIINDNDDNNNSHGYRSNSDCKNNINNNNC 100
>SB_8952| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 189
Score = 27.9 bits (59), Expect = 7.9
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
Frame = -1
Query: 267 GRRLQEPHRERRVQRCTKQE---LPEAIRGP 184
G +EPH +RR+QRC + PE+ R P
Sbjct: 99 GHDSEEPHAKRRIQRCQADKSDPFPESGRQP 129
>SB_8320| Best HMM Match : p450 (HMM E-Value=0)
Length = 1207
Score = 27.9 bits (59), Expect = 7.9
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Frame = -2
Query: 410 RPLAEVVVARQSFCLEV--SGAGSDDLRSVEGDTVNSIQDDSRRMRGLRE 267
RPL EV R +FC + + AG + +VEG TV SRR+ + E
Sbjct: 292 RPLLEVWKWR-TFCTRMPKTDAGRREKATVEGQTVGGRDPASRRLANISE 340
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,799,244
Number of Sequences: 59808
Number of extensions: 320107
Number of successful extensions: 835
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 763
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 831
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1721264831
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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