Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_O19
         (672 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding prote...    25   0.50 
AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding pro...    25   0.50 
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    22   6.1  

>AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding protein
           ASP1 protein.
          Length = 144

 Score = 25.4 bits (53), Expect = 0.50
 Identities = 14/49 (28%), Positives = 23/49 (46%)
 Frame = -2

Query: 374 FCLEVSGAGSDDLRSVEGDTVNSIQDDSRRMRGLREGGDCRNHTGSDEC 228
           +CL  + +  DD  +V+ D +  +  D  + R     G C   +GSD C
Sbjct: 75  YCLLEAFSLVDDEANVDEDIMLGLLPDQLQERAQSVMGKCLPTSGSDNC 123


>AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding
           protein ASP1 protein.
          Length = 144

 Score = 25.4 bits (53), Expect = 0.50
 Identities = 14/49 (28%), Positives = 23/49 (46%)
 Frame = -2

Query: 374 FCLEVSGAGSDDLRSVEGDTVNSIQDDSRRMRGLREGGDCRNHTGSDEC 228
           +CL  + +  DD  +V+ D +  +  D  + R     G C   +GSD C
Sbjct: 75  YCLLEAFSLVDDEANVDEDIMLGLLPDQLQERAQSVMGKCLPTSGSDNC 123


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
 Frame = +3

Query: 564 W*LPHRK*TDLKRLLYYCETLP-NKFCIIL 650
           W LPH        LLYY ++L  + F +IL
Sbjct: 303 WQLPHNSTNPPNILLYYRDSLALSVFALIL 332


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,119
Number of Sequences: 438
Number of extensions: 3004
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20343105
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)