Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_O19
         (672 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g30230.1 68417.m04299 hypothetical protein                          35   0.057
At1g17690.1 68414.m02190 expressed protein                             30   1.2  
At2g18630.1 68415.m02169 expressed protein unusual splice site a...    30   1.6  
At5g66675.1 68418.m08405 expressed protein                             29   2.8  
At5g28300.1 68418.m03436 trihelix DNA-binding protein, putative ...    27   8.6  
At1g13300.1 68414.m01544 myb family transcription factor contain...    27   8.6  

>At4g30230.1 68417.m04299 hypothetical protein 
          Length = 260

 Score = 34.7 bits (76), Expect = 0.057
 Identities = 17/35 (48%), Positives = 21/35 (60%)
 Frame = +1

Query: 82  QSSRSPSPSQAWWLLWPTALSCLELVRCPSTAPVW 186
           + SRSPSPS +W  L   ALSC +     +TAP W
Sbjct: 224 RGSRSPSPSPSWRFL--NALSCKKPTSVAATAPFW 256


>At1g17690.1 68414.m02190 expressed protein
          Length = 754

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = -2

Query: 365 EVSGAGSDDLRSVEGDTVNSIQDDSRRMRGLREGGDCRNHTGSDE 231
           E   +GSDDL S +G+   S  DD   + GL +     N   S+E
Sbjct: 105 EEENSGSDDLSSTDGEDDKSQGDDQETLGGLTDDTQEDNDNQSEE 149


>At2g18630.1 68415.m02169 expressed protein unusual splice site at
           second intron; GA instead of conserved GT at donor site;
           similar to At14a GI:11994571 and GI:11994573
           [Arabidopsis thaliana]
          Length = 393

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 15/39 (38%), Positives = 26/39 (66%)
 Frame = +3

Query: 69  VVLFSIFAVAVAKPSLVAPLAYSAVVPGVSSLSQYSTSV 185
           V++FS+ A AVA P +VA +A +  VP V S+ ++  ++
Sbjct: 235 VLIFSVVAAAVAAPPVVAAIAGALAVP-VGSVGKWCNTL 272


>At5g66675.1 68418.m08405 expressed protein 
          Length = 412

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 14/35 (40%), Positives = 23/35 (65%)
 Frame = +3

Query: 69  VVLFSIFAVAVAKPSLVAPLAYSAVVPGVSSLSQY 173
           V++FS+ A AVA P +V  LA +  VP + S+ ++
Sbjct: 249 VLIFSVVAAAVAAPPVVTALAAALAVP-IGSIGKW 282


>At5g28300.1 68418.m03436 trihelix DNA-binding protein, putative
           similar to GT-2 factor [Arabidopsis thaliana GI:416490
          Length = 619

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = -2

Query: 146 HDSAVGQRSHQAWLGDGDRED*KQHHQFVH 57
           HD   G  +   W+G  D +D   HHQ  H
Sbjct: 70  HDIKDGGATTGEWIGQTDHDDSDNHHQHHH 99


>At1g13300.1 68414.m01544 myb family transcription factor contains
           Pfam domain, PF00249: Myb-like DNA-binding domain
          Length = 344

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 5/42 (11%)
 Frame = +2

Query: 92  GRRRQAKLGGSFGLQRCRAWS-----*FVVPVQHQCGPRIAS 202
           GR+R+A+  G  G ++ R WS      F+  +QH  GP +A+
Sbjct: 167 GRKREAEKDGGGGRKQRRCWSSQLHRRFLNALQHLGGPHVAT 208


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,224,147
Number of Sequences: 28952
Number of extensions: 210114
Number of successful extensions: 581
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 576
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 580
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1422784080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)