Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_F_O18
(863 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_16903| Best HMM Match : No HMM Matches (HMM E-Value=.) 278 5e-75
SB_55500| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=2.8e-24) 180 2e-45
SB_38307| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=1.6e-27) 58 1e-08
SB_235| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=3.9e-15) 45 7e-05
SB_39846| Best HMM Match : SIR2 (HMM E-Value=1.4013e-45) 35 0.098
SB_45328| Best HMM Match : DUF1162 (HMM E-Value=6.1e-09) 29 6.5
SB_21511| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=0.74) 28 8.5
SB_48160| Best HMM Match : Cytochrom_C (HMM E-Value=1.8e-05) 28 8.5
>SB_16903| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 263
Score = 278 bits (681), Expect = 5e-75
Identities = 126/225 (56%), Positives = 160/225 (71%)
Frame = +3
Query: 189 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 368
NPL EKRP+NF IG IQP RDLSRFVRWP+Y+++QRQK++L +RLKVPP INQFTQ LD
Sbjct: 29 NPLIEKRPRNFGIGGDIQPKRDLSRFVRWPRYVKLQRQKSLLYQRLKVPPAINQFTQALD 88
Query: 369 KTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXXRPNTIRSGTNTVTKLVE 548
+ + LFK+L KYRPET +P ++ G N +T LVE
Sbjct: 89 RQSTVQLFKLLHKYRPETKAEKKARLSAKAEKKAEGKEEAPGKKPMLVKYGINHITSLVE 148
Query: 549 KKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTCLALTNVE 728
KKAQLVVIAHDVDPIE+V++LPALCRKM VPYCIVKGK+RLG +VH+K T L +T V
Sbjct: 149 NKKAQLVVIAHDVDPIEIVVWLPALCRKMQVPYCIVKGKARLGKVVHKKNATALCITGVR 208
Query: 729 SGDRASFSKVVEAIKTNFNXRYXELRKHWGGGVLGNXSNARIAKL 863
D+ S + ++E++KTN+N R+ E+RKHWGGG++G S A AK+
Sbjct: 209 QEDKNSLNNLIESVKTNYNERFDEIRKHWGGGIMGPKSLAATAKV 253
>SB_55500| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=2.8e-24)
Length = 172
Score = 180 bits (437), Expect = 2e-45
Identities = 82/159 (51%), Positives = 106/159 (66%)
Frame = +3
Query: 387 LFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXXRPNTIRSGTNTVTKLVEKKKAQL 566
LFK+L KYRPET +P ++ G N +T LVE KKAQL
Sbjct: 4 LFKLLHKYRPETKAEKKARLSAKAEKKAEGKEEAPGKKPMLVKYGINHITSLVENKKAQL 63
Query: 567 VVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTCLALTNVESGDRAS 746
VVIAHDVDPIE+V++LPALCRKM VPYCIVKGK+RLG +VH+K T L +T V D+ S
Sbjct: 64 VVIAHDVDPIEIVVWLPALCRKMQVPYCIVKGKARLGKVVHKKNATALCITGVRQEDKNS 123
Query: 747 FSKVVEAIKTNFNXRYXELRKHWGGGVLGNXSNARIAKL 863
+ ++E++KTN+N R+ E+RKHWGGG++G S A AK+
Sbjct: 124 LNNLIESVKTNYNERFDEIRKHWGGGIMGPKSLAATAKV 162
>SB_38307| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=1.6e-27)
Length = 187
Score = 57.6 bits (133), Expect = 1e-08
Identities = 30/90 (33%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
Frame = +3
Query: 510 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGAL-- 683
+R G N TK + + A+ +V+A D +P+E++L LP LC VPY V+ K+ LG
Sbjct: 94 LRKGANEATKCLNRGIAEFIVMAADTEPLEILLHLPLLCEDKNVPYVFVRSKAALGRATG 153
Query: 684 VHRKTCTCLALTNVESGDRASFSKVVEAIK 773
V R C N S + + AI+
Sbjct: 154 VTRPVIACAVTVNEGSQLKPQIQTLQNAIE 183
>SB_235| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=3.9e-15)
Length = 544
Score = 45.2 bits (102), Expect = 7e-05
Identities = 18/56 (32%), Positives = 30/56 (53%)
Frame = +3
Query: 498 RPNTIRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGK 665
+ T+R G V K + K + V++A DV PI+++ +P +C +PY V K
Sbjct: 95 KAKTLRRGVKEVVKALRKGEKGFVILAGDVSPIDVISHIPVMCEDSKIPYAYVPSK 150
>SB_39846| Best HMM Match : SIR2 (HMM E-Value=1.4013e-45)
Length = 427
Score = 34.7 bits (76), Expect = 0.098
Identities = 15/53 (28%), Positives = 29/53 (54%)
Frame = +3
Query: 519 GTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 677
G + K ++K++A L +++++ D V + ALC + G+P V +LG
Sbjct: 41 GLHEAAKSLDKREAHLCILSNNCDEAMYVKLVEALCAEHGIPLLKVDDSKKLG 93
>SB_45328| Best HMM Match : DUF1162 (HMM E-Value=6.1e-09)
Length = 1508
Score = 28.7 bits (61), Expect = 6.5
Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Frame = -3
Query: 711 LSMCMSCGVQVHRGGTCP*--QCSMVRPFYGITLAGREPAQW 592
L C+ C +Q H G + MVRP+ G EPA W
Sbjct: 1187 LLACLFCRLQSHEDGVTVDFSRMKMVRPYEGAIRRSFEPAMW 1228
>SB_21511| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=0.74)
Length = 437
Score = 28.3 bits (60), Expect = 8.5
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = -2
Query: 754 FEKEARSPDSTFVRAKHVHVLRCTSAPRRDLPLT 653
F + +S R +H H+ RCTSAP P T
Sbjct: 61 FNNFTNTTESWPQRKRHFHLRRCTSAPEPSSPNT 94
>SB_48160| Best HMM Match : Cytochrom_C (HMM E-Value=1.8e-05)
Length = 212
Score = 28.3 bits (60), Expect = 8.5
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -1
Query: 500 PLWWRLIFLGNLSFSSFPQPLFPG 429
P WW ++F+G + FS L+PG
Sbjct: 56 PKWWFMLFIGTIVFSIGYLVLYPG 79
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,610,812
Number of Sequences: 59808
Number of extensions: 454916
Number of successful extensions: 1345
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1212
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1342
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2467263854
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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