BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fcaL-P02_F_O15 (826 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo... 29 0.80 SPCC1682.12c |ubp16||ubiquitin C-terminal hydrolase Ubp16|Schizo... 28 1.8 SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc... 27 4.3 SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase Wis4|Schizo... 27 4.3 SPBC4F6.09 |str1||siderophore-iron transporter Str1 |Schizosacch... 26 5.6 SPBC13G1.01c |nam9||mitochondrial ribosomal protein subunit S4|S... 26 7.5 SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc... 25 9.9 >SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharomyces pombe|chr 1|||Manual Length = 1183 Score = 29.1 bits (62), Expect = 0.80 Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 2/76 (2%) Frame = +1 Query: 274 EIKMST*YHPDLEMNL*HVKAHLLIHVVKKESLKRKSHLSKMILKESR-SI-HQLMEELI 447 E + S+ H + E + A +LI V K+E KRK L +LKE+ SI + + L Sbjct: 34 EQESSSEVHANPEPDNQDSNAEILIDVPKEERQKRKQELKDQLLKENEGSISSKKKKRLD 93 Query: 448 CLKRHLLKKGEVKKMI 495 + LKK EV +I Sbjct: 94 KYIENKLKKEEVASLI 109 >SPCC1682.12c |ubp16||ubiquitin C-terminal hydrolase Ubp16|Schizosaccharomyces pombe|chr 3|||Manual Length = 457 Score = 27.9 bits (59), Expect = 1.8 Identities = 15/64 (23%), Positives = 31/64 (48%) Frame = -1 Query: 256 LMYFLNLINSVMVTGNIPETWKSQEVIAIKKPNKPTNDVASYRPIALSSVLTKVAEHLVK 77 + Y L+ +S+ N + ++ +A PNK T ++++P + S+L ++ H Sbjct: 150 VQYLLSGQHSLSCRMNACVLCRMEQHVARAYPNKGTKRASAFKPSGIQSMLKVISSHFRP 209 Query: 76 NRLE 65 R E Sbjct: 210 YRQE 213 >SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces pombe|chr 1|||Manual Length = 1679 Score = 26.6 bits (56), Expect = 4.3 Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 5/56 (8%) Frame = -1 Query: 343 KGVLSHVKD-----SSPGQDGIMYSFLSHLGNSALMYFLNLINSVMVTGNIPETWK 191 KG ++ KD S G ++YSFLS GNS+L + S + IPE K Sbjct: 959 KGTVATYKDICSLASESGNPDLIYSFLSIAGNSSLWQARKGLASGISYLGIPEDQK 1014 >SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase Wis4|Schizosaccharomyces pombe|chr 1|||Manual Length = 1401 Score = 26.6 bits (56), Expect = 4.3 Identities = 10/28 (35%), Positives = 17/28 (60%) Frame = +3 Query: 498 DSLKADRNRLILRQTSVGHVEGDKEVQN 581 D L+ +RN +L + ++GHV D +N Sbjct: 993 DELEIERNNTLLERLAIGHVLDDSVFRN 1020 >SPBC4F6.09 |str1||siderophore-iron transporter Str1 |Schizosaccharomyces pombe|chr 2|||Manual Length = 612 Score = 26.2 bits (55), Expect = 5.6 Identities = 16/45 (35%), Positives = 24/45 (53%) Frame = +2 Query: 581 CFPAFLLFISEEFTCNTNNFIENI*VFIGHVLSIDSLSYLSFTYS 715 C +FL +I+ F C N + + V H SI + Y+S+TYS Sbjct: 372 CAMSFLFYIT--FYCWDNYYYSFLQVV--HYTSITAAGYISYTYS 412 >SPBC13G1.01c |nam9||mitochondrial ribosomal protein subunit S4|Schizosaccharomyces pombe|chr 2|||Manual Length = 327 Score = 25.8 bits (54), Expect = 7.5 Identities = 14/44 (31%), Positives = 22/44 (50%) Frame = +3 Query: 480 SEEDDKDSLKADRNRLILRQTSVGHVEGDKEVQNVFQPSCFLSL 611 S +D ++ K D + + QTS G + E + F P F+SL Sbjct: 174 SSKDGENEKKKDNDDDLFEQTSNGKLPSINETISNFVPKPFMSL 217 >SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Schizosaccharomyces pombe|chr 2|||Manual Length = 1958 Score = 25.4 bits (53), Expect = 9.9 Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 2/47 (4%) Frame = +2 Query: 605 ISEEFTCNTNNFIENI*VFIGHVLSIDSLSYLSFTYSIHT--FSIPP 739 I E+F N F+EN +F +D S T S+ T F PP Sbjct: 1132 IMEQFRMQQNKFLENHALFEASDCEMDEADEFSVTSSVSTKLFLDPP 1178 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 3,176,161 Number of Sequences: 5004 Number of extensions: 62733 Number of successful extensions: 207 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 200 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 207 length of database: 2,362,478 effective HSP length: 72 effective length of database: 2,002,190 effective search space used: 404442380 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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