Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_F_O15
(826 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF100669-1|AAK39265.1| 931|Caenorhabditis elegans Hypothetical ... 54 2e-07
AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse trans... 48 8e-06
AF025462-7|AAB71003.1| 805|Caenorhabditis elegans Hypothetical ... 48 8e-06
U58735-1|AAC48148.1| 891|Caenorhabditis elegans Hypothetical pr... 44 1e-04
AF016663-5|AAC70880.1| 864|Caenorhabditis elegans Hypothetical ... 36 0.027
U42437-2|AAW88401.1| 294|Caenorhabditis elegans Hypothetical pr... 31 1.0
U23511-3|AAC46790.1| 636|Caenorhabditis elegans Small protein 6... 31 1.3
AF104017-1|AAD12261.1| 636|Caenorhabditis elegans serine-threon... 31 1.3
Z75536-2|CAA99830.2| 4171|Caenorhabditis elegans Hypothetical pr... 29 3.1
AC024751-13|AAK21512.2| 488|Caenorhabditis elegans Hypothetical... 29 3.1
U41749-2|AAB52486.2| 308|Caenorhabditis elegans Hypothetical pr... 28 9.3
>AF100669-1|AAK39265.1| 931|Caenorhabditis elegans Hypothetical
protein R11E3.3 protein.
Length = 931
Score = 53.6 bits (123), Expect = 2e-07
Identities = 30/86 (34%), Positives = 42/86 (48%)
Frame = -1
Query: 307 GQDGIMYSFLSHLGNSALMYFLNLINSVMVTGNIPETWKSQEVIAIKKPNKPTNDVASYR 128
G DGI + L + L N + T IP+ WK VI I KP K +SYR
Sbjct: 347 GPDGIAQIHIRKLPMCGYSFLAYLYNVSLSTNIIPDKWKKANVIMIPKPKKDPAIASSYR 406
Query: 127 PIALSSVLTKVAEHLVKNRLEWFIEN 50
PI+L S + K+ E + R++ IE+
Sbjct: 407 PISLLSPIAKLLEKAILKRIKNSIES 432
>AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse
transcriptase protein.
Length = 1066
Score = 48.0 bits (109), Expect = 8e-06
Identities = 31/100 (31%), Positives = 48/100 (48%), Gaps = 1/100 (1%)
Frame = -1
Query: 364 PFSLHELKGVL-SHVKDSSPGQDGIMYSFLSHLGNSALMYFLNLINSVMVTGNIPETWKS 188
PF E++ VL S + GQD I FL ++ + + N + + N+P+ WK+
Sbjct: 546 PFLPEEIRHVLRSFPNGKAAGQDKISADFLKSCHDNVIDLITDRFNRYLHSRNVPKPWKT 605
Query: 187 QEVIAIKKPNKPTNDVASYRPIALSSVLTKVAEHLVKNRL 68
+ I K N + +YRPI L VL KV + NR+
Sbjct: 606 SKTTLIFKKGDREN-LENYRPICLLPVLYKVFTKCLLNRM 644
>AF025462-7|AAB71003.1| 805|Caenorhabditis elegans Hypothetical
protein K10F12.5 protein.
Length = 805
Score = 48.0 bits (109), Expect = 8e-06
Identities = 31/100 (31%), Positives = 48/100 (48%), Gaps = 1/100 (1%)
Frame = -1
Query: 364 PFSLHELKGVL-SHVKDSSPGQDGIMYSFLSHLGNSALMYFLNLINSVMVTGNIPETWKS 188
PF E++ VL S + GQD I FL ++ + + N + + N+P+ WK+
Sbjct: 285 PFLPEEIRHVLRSFPNGKAAGQDKISADFLKSCHDNVIDLITDRFNRYLHSRNVPKPWKT 344
Query: 187 QEVIAIKKPNKPTNDVASYRPIALSSVLTKVAEHLVKNRL 68
+ I K N + +YRPI L VL KV + NR+
Sbjct: 345 SKTTLIFKKGDREN-LENYRPICLLPVLYKVFTKCLLNRM 383
>U58735-1|AAC48148.1| 891|Caenorhabditis elegans Hypothetical
protein F20B4.7 protein.
Length = 891
Score = 44.4 bits (100), Expect = 1e-04
Identities = 29/100 (29%), Positives = 47/100 (47%), Gaps = 1/100 (1%)
Frame = -1
Query: 364 PFSLHELKGVL-SHVKDSSPGQDGIMYSFLSHLGNSALMYFLNLINSVMVTGNIPETWKS 188
PF +++ L S + GQD I FL ++ + + N + + N+P+ WK+
Sbjct: 375 PFLPEKIRYALRSFPNGKAAGQDKISADFLKSCHDNVIDLITDRFNRYLHSRNVPKPWKT 434
Query: 187 QEVIAIKKPNKPTNDVASYRPIALSSVLTKVAEHLVKNRL 68
+ I K N + +YRPI L VL KV + NR+
Sbjct: 435 SKTTLIFKKGDREN-LENYRPICLLPVLYKVFTKCLLNRM 473
>AF016663-5|AAC70880.1| 864|Caenorhabditis elegans Hypothetical
protein F21E9.5 protein.
Length = 864
Score = 36.3 bits (80), Expect = 0.027
Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
Frame = -1
Query: 364 PFSLHELKGVL-SHVKDSSPGQDGIMYSFLSHLGNSALMYFLNLINSVMVTGNIPETWKS 188
PF E++ + S + G D I FL G+ + N + +GNIP+ WK+
Sbjct: 395 PFLFGEIRAAINSFPNGKAAGSDKITADFLKSCGDYVIRLITGRFNRYLESGNIPKDWKT 454
Query: 187 QEVIAIKK 164
+ I K
Sbjct: 455 SKTTLIFK 462
>U42437-2|AAW88401.1| 294|Caenorhabditis elegans Hypothetical
protein F30B5.8 protein.
Length = 294
Score = 31.1 bits (67), Expect = 1.0
Identities = 17/44 (38%), Positives = 24/44 (54%)
Frame = -1
Query: 658 NLDILNEVICITRKFLRDKKQEGWKTFCTSLSPSTCPTEVWRSI 527
NL ++ + I R F+RDKK T T ++PS PT + SI
Sbjct: 254 NLGLMISTVIIYRIFMRDKKS---ATIVTRVTPSVRPTSIIHSI 294
>U23511-3|AAC46790.1| 636|Caenorhabditis elegans Small protein 6
protein.
Length = 636
Score = 30.7 bits (66), Expect = 1.3
Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Frame = -1
Query: 667 SNENLDILNEVICITRKFLRDKKQEGWKTFCTSLSPSTCPTEVWRSIKRFR-SAFK 503
++ N D +N+VIC+ R +R WK S + W SI FR SA K
Sbjct: 544 NDPNFDEMNDVICVRR--IRPPPDLAWKNVPALNELSKLMEDSWHSIPHFRHSALK 597
>AF104017-1|AAD12261.1| 636|Caenorhabditis elegans serine-threonine
kinase SMA-6 protein.
Length = 636
Score = 30.7 bits (66), Expect = 1.3
Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Frame = -1
Query: 667 SNENLDILNEVICITRKFLRDKKQEGWKTFCTSLSPSTCPTEVWRSIKRFR-SAFK 503
++ N D +N+VIC+ R +R WK S + W SI FR SA K
Sbjct: 544 NDPNFDEMNDVICVRR--IRPPPDLAWKNVPALNELSKLMEDSWHSIPHFRHSALK 597
>Z75536-2|CAA99830.2| 4171|Caenorhabditis elegans Hypothetical protein
F18C12.1 protein.
Length = 4171
Score = 29.5 bits (63), Expect = 3.1
Identities = 22/72 (30%), Positives = 33/72 (45%)
Frame = -1
Query: 247 FLNLINSVMVTGNIPETWKSQEVIAIKKPNKPTNDVASYRPIALSSVLTKVAEHLVKNRL 68
FL INS++ +GN+P + QE+ + + AS+ AL L LV L
Sbjct: 2632 FLQAINSLLASGNVPGLFTQQELDGLVALVSEAANQASFTG-ALQQFLAHRIRSLVHVVL 2690
Query: 67 EWFIENNNFIAN 32
+E N+F N
Sbjct: 2691 ILEVEANDFKIN 2702
>AC024751-13|AAK21512.2| 488|Caenorhabditis elegans Hypothetical
protein Y18H1A.9 protein.
Length = 488
Score = 29.5 bits (63), Expect = 3.1
Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Frame = -1
Query: 322 KDSSPGQDGIMYSFLSHLGNSALMY--FLNLINSVMVTGNIPETWKSQEVIAIKKPNKPT 149
+D + G+ + YSFL L ++ FL N ++ T ETW++ +VIA K P+
Sbjct: 387 EDWAKGKAHVKYSFLFELRPEEQVWDGFLLAENQIIPTAR--ETWEAVKVIASKTIELPS 444
Query: 148 N 146
N
Sbjct: 445 N 445
>U41749-2|AAB52486.2| 308|Caenorhabditis elegans Hypothetical
protein F09E10.5 protein.
Length = 308
Score = 27.9 bits (59), Expect = 9.3
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Frame = -2
Query: 618 NSSEIKSRKAGKHFVLLYLLLRALQKFGAVLNDF--GLLSKNLYHLLH 481
N ++KS +HFVL +L LQ F ++ + G + + Y LH
Sbjct: 77 NVEQVKSDSWKQHFVLDRCVLHMLQMFHETISSYHNGTVDEEFYRKLH 124
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,284,231
Number of Sequences: 27780
Number of extensions: 335715
Number of successful extensions: 1021
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 989
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1018
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2040452812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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