Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_O15
         (826 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    25   0.85 
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    24   2.0  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      23   4.5  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   7.9  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   7.9  

>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 25.0 bits (52), Expect = 0.85
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +2

Query: 671 VLSIDSLSYLSFTYSIHTFSIPPWR 745
           VLSIDS++  S TY    F    WR
Sbjct: 38  VLSIDSINEESMTYVADIFLAQSWR 62


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
 Frame = +2

Query: 626 NTNNFIENI*VFIGHVLSIDSLSYLS--FTYSIHTFSIPPWRIWNL 757
           N N FI NI V +G     D+ +Y+S    Y +  +S    R W +
Sbjct: 185 NMNTFIANIAVDLGKGGCNDAFAYMSDELGYGLIVYSWEQNRSWRI 230


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 8/27 (29%), Positives = 13/27 (48%)
 Frame = +1

Query: 679 HRLSQLPFFYLQHPYILYPTMEDMESY 759
           H L      Y Q PY++Y   ++ + Y
Sbjct: 74  HHLHHHQVLYQQSPYLMYENPDEEKRY 100


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 7.9
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -1

Query: 97   VAEHLVKNRLEWFIENNN 44
            V EH  KN+ EW   +NN
Sbjct: 1495 VVEHKKKNQQEWNQVSNN 1512


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.8 bits (44), Expect = 7.9
 Identities = 9/37 (24%), Positives = 17/37 (45%)
 Frame = +2

Query: 8   PMPETVLTIGYEIIVFNKPFQTILHKMFSNLS*NRGQ 118
           PM +   + G  + ++N PF  +  +  S  + N  Q
Sbjct: 310 PMVDNPESTGNLVYIYNNPFSDVEERRVSKTAMNSNQ 346


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 207,891
Number of Sequences: 438
Number of extensions: 4418
Number of successful extensions: 13
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26338809
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)