Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_F_O14
(417 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_38468| Best HMM Match : Ribosomal_L29 (HMM E-Value=1.5e-23) 109 7e-25
SB_47982| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.5
SB_38972| Best HMM Match : PIP5K (HMM E-Value=0) 28 2.7
SB_13108| Best HMM Match : PRRSV_2b (HMM E-Value=6.1) 28 2.7
SB_29128| Best HMM Match : Ank (HMM E-Value=2.9e-19) 27 4.7
SB_9162| Best HMM Match : Ribosomal_L19e (HMM E-Value=3.4) 27 4.7
SB_7913| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.2
SB_4336| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.2
SB_21046| Best HMM Match : DUF331 (HMM E-Value=3.2) 27 6.2
SB_5012| Best HMM Match : 7tm_3 (HMM E-Value=0) 27 6.2
SB_51222| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.2
SB_22533| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.2
SB_52560| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.2
>SB_38468| Best HMM Match : Ribosomal_L29 (HMM E-Value=1.5e-23)
Length = 131
Score = 109 bits (263), Expect = 7e-25
Identities = 57/95 (60%), Positives = 69/95 (72%)
Frame = +1
Query: 10 LTNLRVAKVTGGVASKLSKLRVVSKAIARVYIVYHQKMKVNLRNHYKNKKYKPLDLRAKK 189
L+ LRVAKVTGG ASKLSK++VV K++ARV V Q + NLR Y+ KKY PLDLR K
Sbjct: 36 LSQLRVAKVTGGAASKLSKIKVVRKSVARVLTVVSQTQRDNLRKFYRKKKYLPLDLRPKL 95
Query: 190 TRAMRKALTKHEAKIKTRKEIRKKSLFPPRVYAVK 294
TRAMR++LTK EA KT K+ +K + F R YAVK
Sbjct: 96 TRAMRRSLTKKEASSKTLKQQKKLAHFSLRKYAVK 130
>SB_47982| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 709
Score = 29.1 bits (62), Expect = 1.5
Identities = 21/57 (36%), Positives = 30/57 (52%)
Frame = +1
Query: 49 ASKLSKLRVVSKAIARVYIVYHQKMKVNLRNHYKNKKYKPLDLRAKKTRAMRKALTK 219
ASK SK RV IA++ H ++ +RN N K +R K+RAM+K T+
Sbjct: 588 ASKKSKKRVGRPDIAQLMRAKHFGIQTEVRN--LNSKCLIFGVRKFKSRAMKKMQTR 642
>SB_38972| Best HMM Match : PIP5K (HMM E-Value=0)
Length = 426
Score = 28.3 bits (60), Expect = 2.7
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +1
Query: 82 KAIARVYIVYHQKMKVNLRNHYKNKKYKPLDLRAKKTR 195
KA ++V + H K NL +H+K K+Y P+ R + R
Sbjct: 70 KAYSKVRVDNHLFNKENLPSHFKFKEYCPMVFRNLRER 107
>SB_13108| Best HMM Match : PRRSV_2b (HMM E-Value=6.1)
Length = 311
Score = 28.3 bits (60), Expect = 2.7
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = +1
Query: 148 KNKKYKPLDLRAKKTR-AMRKALTKHEAKIKTRKEIRKKSLFPPRVYA 288
+N+K DL K T +M + KH AK+ R E++ S PP V A
Sbjct: 104 ENEKLWLSDLVEKSTPCSMDNSRQKHIAKLLLRSEMKGNSELPPHVQA 151
>SB_29128| Best HMM Match : Ank (HMM E-Value=2.9e-19)
Length = 454
Score = 27.5 bits (58), Expect = 4.7
Identities = 15/56 (26%), Positives = 28/56 (50%)
Frame = +1
Query: 118 KMKVNLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAKIKTRKEIRKKSLFPPRVY 285
K K R +NK Y +DL+ +++ A+ K + + IR++ +F P +Y
Sbjct: 18 KWKRQTRGKQENKLYSFVDLKGEQSDALLVEAFKKGGLDEVNRLIREEGVFLPYLY 73
>SB_9162| Best HMM Match : Ribosomal_L19e (HMM E-Value=3.4)
Length = 160
Score = 27.5 bits (58), Expect = 4.7
Identities = 23/86 (26%), Positives = 41/86 (47%)
Frame = +1
Query: 4 PALTNLRVAKVTGGVASKLSKLRVVSKAIARVYIVYHQKMKVNLRNHYKNKKYKPLDLRA 183
P TN V ++ G + + R + K R+ +++K R K K K R+
Sbjct: 21 PEDTNAVVFVLSQGKIRSIERQRQIKKLTKRI-----KRIKALNRGKRKKKHSK----RS 71
Query: 184 KKTRAMRKALTKHEAKIKTRKEIRKK 261
+K R MR+ L + + K K+ ++ R+K
Sbjct: 72 QKLREMRRWLRRFKQKGKSDRDARRK 97
>SB_7913| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 336
Score = 27.1 bits (57), Expect = 6.2
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = +1
Query: 136 RNHYKNKKYKPLDLRAKKTRAMRKALTKHEAKIKTRKEIR 255
+ +K K+ K D + +K+RA + LTK + +IK E+R
Sbjct: 289 KKKHKKKEKKEKDEK-RKSRAEDEGLTKEQLEIKEANELR 327
>SB_4336| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 227
Score = 27.1 bits (57), Expect = 6.2
Identities = 16/59 (27%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Frame = +1
Query: 94 RVYIVYHQKMKVNLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAKI--KTRKEIRKKS 264
R +V + VN+R+ NKK+K ++ R++ M+ + +K+ K K + K+S
Sbjct: 23 RPKVVNMRSKVVNMRSKVVNKKFKAVNKRSRAVN-MKSTVVSMRSKVVDKRSKSVDKRS 80
>SB_21046| Best HMM Match : DUF331 (HMM E-Value=3.2)
Length = 245
Score = 27.1 bits (57), Expect = 6.2
Identities = 18/71 (25%), Positives = 30/71 (42%)
Frame = +1
Query: 10 LTNLRVAKVTGGVASKLSKLRVVSKAIARVYIVYHQKMKVNLRNHYKNKKYKPLDLRAKK 189
L N+ K G V S + V + I ++ + KMK + +HY++ L AK
Sbjct: 77 LKNVTSYKYLGIVFSAIGNFNVAKEEIKKIALKALYKMKKEMGSHYRDNLKLATRLFAKL 136
Query: 190 TRAMRKALTKH 222
T + K+
Sbjct: 137 TNKSKCRSVKY 147
>SB_5012| Best HMM Match : 7tm_3 (HMM E-Value=0)
Length = 726
Score = 27.1 bits (57), Expect = 6.2
Identities = 16/37 (43%), Positives = 20/37 (54%)
Frame = -2
Query: 281 TLGGKRDFFLISFLVLIFASCLVRALRIARVFLALKS 171
TL G R F L++ S LV+ RIAR+F KS
Sbjct: 511 TLCGIRRFGTGISFCLLYTSLLVKTNRIARIFSGTKS 547
>SB_51222| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2520
Score = 26.6 bits (56), Expect = 8.2
Identities = 14/59 (23%), Positives = 29/59 (49%)
Frame = +1
Query: 43 GVASKLSKLRVVSKAIARVYIVYHQKMKVNLRNHYKNKKYKPLDLRAKKTRAMRKALTK 219
GV S++ + R+ S+ + + HQ+ +RN ++NK + + A + M+ K
Sbjct: 1113 GVDSRIQQARLESENNFKEILETHQREMEEIRNSHENKMQEMAENHASELAQMKDIYEK 1171
>SB_22533| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 461
Score = 26.6 bits (56), Expect = 8.2
Identities = 20/84 (23%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Frame = +1
Query: 19 LRVAKVTGGVASKLSKLRVVSKAIARVYIVYHQKMKVNLRNHYKNKKYKPLDLRAKKTRA 198
L++ +VT +A++ + ++ I + + + + L + ++ + LD +K+ A
Sbjct: 60 LQIFRVTEEIANRQAVQQLNDAVILKREKISCIQSVIRLIQQHTSQDQQSLD-SIRKSNA 118
Query: 199 MRKALTKHEA-KIKTRKEIRKKSL 267
++K K A +IKT E++KK L
Sbjct: 119 VKKVKLKSNADEIKTLLEVKKKHL 142
>SB_52560| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1263
Score = 26.6 bits (56), Expect = 8.2
Identities = 12/28 (42%), Positives = 13/28 (46%)
Frame = +3
Query: 168 FRFKSQEDPCYAQGSY*TRSKDQDEERD 251
F S DP Y G Y D+DEE D
Sbjct: 1207 FNVTSGSDPDYGNGDYDYDENDEDEEGD 1234
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,198,048
Number of Sequences: 59808
Number of extensions: 132697
Number of successful extensions: 516
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 467
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 516
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 777158991
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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