Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_F_O14
(417 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g02610.1 68418.m00197 60S ribosomal protein L35 (RPL35D) ribo... 114 3e-26
At3g55170.2 68416.m06128 60S ribosomal protein L35 (RPL35C) vari... 114 3e-26
At3g55170.1 68416.m06127 60S ribosomal protein L35 (RPL35C) vari... 114 3e-26
At2g39390.1 68415.m04834 60S ribosomal protein L35 (RPL35B) 113 3e-26
At3g09500.1 68416.m01129 60S ribosomal protein L35 (RPL35A) simi... 113 5e-26
At1g47760.1 68414.m05311 MADS-box protein (AGL102) contains simi... 30 0.72
At5g25330.1 68418.m03005 hypothetical protein contains Pfam prof... 29 1.3
At3g55160.1 68416.m06126 expressed protein 28 2.9
At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA) 27 3.8
At4g14350.2 68417.m02211 protein kinase family protein contains ... 27 5.1
At4g14350.1 68417.m02210 protein kinase family protein contains ... 27 5.1
At5g46840.1 68418.m05771 RNA recognition motif (RRM)-containing ... 27 6.7
At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S ... 27 6.7
>At5g02610.1 68418.m00197 60S ribosomal protein L35 (RPL35D)
ribosomal protein L35- cytosolic, Arabidopsis thaliana,
PIR:T00549
Length = 123
Score = 114 bits (274), Expect = 3e-26
Identities = 57/95 (60%), Positives = 70/95 (73%)
Frame = +1
Query: 10 LTNLRVAKVTGGVASKLSKLRVVSKAIARVYIVYHQKMKVNLRNHYKNKKYKPLDLRAKK 189
L LRVAKVTGG +KLSK++VV K+IA+V V QK K LR YKNKK PLDLR KK
Sbjct: 28 LALLRVAKVTGGAPNKLSKIKVVRKSIAQVLTVISQKQKSALREAYKNKKLLPLDLRPKK 87
Query: 190 TRAMRKALTKHEAKIKTRKEIRKKSLFPPRVYAVK 294
TRA+R+ LTKH+A +KT +E +K+ FP R YA+K
Sbjct: 88 TRAIRRRLTKHQASLKTEREKKKEMYFPVRKYAIK 122
>At3g55170.2 68416.m06128 60S ribosomal protein L35 (RPL35C) various
ribosomal L35 proteins
Length = 123
Score = 114 bits (274), Expect = 3e-26
Identities = 57/95 (60%), Positives = 70/95 (73%)
Frame = +1
Query: 10 LTNLRVAKVTGGVASKLSKLRVVSKAIARVYIVYHQKMKVNLRNHYKNKKYKPLDLRAKK 189
L +LRVAKVTGG +KLSK++VV K+IA+V V QK K LR YKNKK PLDLR KK
Sbjct: 28 LASLRVAKVTGGAPNKLSKIKVVRKSIAQVLTVSSQKQKSALREAYKNKKLLPLDLRPKK 87
Query: 190 TRAMRKALTKHEAKIKTRKEIRKKSLFPPRVYAVK 294
TRA+R+ LTKH+A +KT +E +K FP R YA+K
Sbjct: 88 TRAIRRRLTKHQASLKTEREKKKDMYFPIRKYAIK 122
>At3g55170.1 68416.m06127 60S ribosomal protein L35 (RPL35C) various
ribosomal L35 proteins
Length = 123
Score = 114 bits (274), Expect = 3e-26
Identities = 57/95 (60%), Positives = 70/95 (73%)
Frame = +1
Query: 10 LTNLRVAKVTGGVASKLSKLRVVSKAIARVYIVYHQKMKVNLRNHYKNKKYKPLDLRAKK 189
L +LRVAKVTGG +KLSK++VV K+IA+V V QK K LR YKNKK PLDLR KK
Sbjct: 28 LASLRVAKVTGGAPNKLSKIKVVRKSIAQVLTVSSQKQKSALREAYKNKKLLPLDLRPKK 87
Query: 190 TRAMRKALTKHEAKIKTRKEIRKKSLFPPRVYAVK 294
TRA+R+ LTKH+A +KT +E +K FP R YA+K
Sbjct: 88 TRAIRRRLTKHQASLKTEREKKKDMYFPIRKYAIK 122
>At2g39390.1 68415.m04834 60S ribosomal protein L35 (RPL35B)
Length = 123
Score = 113 bits (273), Expect = 3e-26
Identities = 57/95 (60%), Positives = 70/95 (73%)
Frame = +1
Query: 10 LTNLRVAKVTGGVASKLSKLRVVSKAIARVYIVYHQKMKVNLRNHYKNKKYKPLDLRAKK 189
L LRVAKVTGG +KLSK++VV K+IA+V V QK K LR YKNKK PLDLR KK
Sbjct: 28 LALLRVAKVTGGAPNKLSKIKVVRKSIAQVLTVISQKQKSALREAYKNKKLLPLDLRPKK 87
Query: 190 TRAMRKALTKHEAKIKTRKEIRKKSLFPPRVYAVK 294
TRA+R+ LTKH+A +KT +E +K+ FP R YA+K
Sbjct: 88 TRAIRRRLTKHQASLKTEREKKKEMYFPIRKYAIK 122
>At3g09500.1 68416.m01129 60S ribosomal protein L35 (RPL35A) similar
to 60S ribosomal protein L35 GB:AAC27830
Length = 123
Score = 113 bits (272), Expect = 5e-26
Identities = 57/95 (60%), Positives = 70/95 (73%)
Frame = +1
Query: 10 LTNLRVAKVTGGVASKLSKLRVVSKAIARVYIVYHQKMKVNLRNHYKNKKYKPLDLRAKK 189
L LRVAKVTGG +KLSK++VV K+IA+V V QK K LR YKNKK PLDLR KK
Sbjct: 28 LALLRVAKVTGGAPNKLSKIKVVRKSIAQVLTVSSQKQKSALREAYKNKKLLPLDLRPKK 87
Query: 190 TRAMRKALTKHEAKIKTRKEIRKKSLFPPRVYAVK 294
TRA+R+ LTKH+A +KT +E +K+ FP R YA+K
Sbjct: 88 TRAIRRRLTKHQASLKTEREKKKEMYFPIRKYAIK 122
>At1g47760.1 68414.m05311 MADS-box protein (AGL102) contains
similarity to MADS-box protein GB:AAC26702 GI:3128222
from [Arabidopsis thaliana]; contains Pfam profile
PF00319: SRF-type transcription factor (DNA-binding and
dimerisation domain)
Length = 184
Score = 29.9 bits (64), Expect = 0.72
Identities = 20/77 (25%), Positives = 36/77 (46%)
Frame = +1
Query: 52 SKLSKLRVVSKAIARVYIVYHQKMKVNLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAK 231
S SKLR + K + ++ K RN K+ + +DL+ + A + L ++A
Sbjct: 73 SASSKLRSLMKELEQIKEFQEDLRKKQQRNLEKSNMKENVDLKLEDLVAFKAKLEAYQAG 132
Query: 232 IKTRKEIRKKSLFPPRV 282
+K RK + + L P +
Sbjct: 133 LK-RKHVEMEDLSSPSI 148
>At5g25330.1 68418.m03005 hypothetical protein contains Pfam profile
PF03267: Arabidopsis protein of unknown function, DUF266
Length = 366
Score = 29.1 bits (62), Expect = 1.3
Identities = 16/48 (33%), Positives = 27/48 (56%)
Frame = +1
Query: 106 VYHQKMKVNLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAKIKTRKE 249
V H VN +H + YKPL++RA+ + +R A ++ +TRK+
Sbjct: 290 VTHVDWSVN--DHGHPRTYKPLEVRAELIQKLRSARPRYGDGNRTRKD 335
>At3g55160.1 68416.m06126 expressed protein
Length = 2149
Score = 27.9 bits (59), Expect = 2.9
Identities = 16/26 (61%), Positives = 19/26 (73%)
Frame = +1
Query: 4 PALTNLRVAKVTGGVASKLSKLRVVS 81
PAL L AKVTGG +KLSK+ V+S
Sbjct: 2071 PAL--LLSAKVTGGTPNKLSKMYVLS 2094
>At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA)
Length = 257
Score = 27.5 bits (58), Expect = 3.8
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +1
Query: 157 KYKPLDLRAKKTRAMRKALTKHEAKIKTRKE 249
KY+P D AKK R ++KA + E K K+
Sbjct: 93 KYRPEDKAAKKERLVKKAQAEAEGKPSESKK 123
>At4g14350.2 68417.m02211 protein kinase family protein contains
similarity to Swiss-Prot:O13310 serine/threonine-protein
kinase orb6 [Schizosaccharomyces pombe]
Length = 551
Score = 27.1 bits (57), Expect = 5.1
Identities = 14/51 (27%), Positives = 24/51 (47%)
Frame = +1
Query: 7 ALTNLRVAKVTGGVASKLSKLRVVSKAIARVYIVYHQKMKVNLRNHYKNKK 159
A +N++ T G LS + A A++YI H KM++ K ++
Sbjct: 25 ATSNVKEGPKTAGGEEALSNITKEKAAAAKLYIENHYKMQMQSLQERKERR 75
>At4g14350.1 68417.m02210 protein kinase family protein contains
similarity to Swiss-Prot:O13310 serine/threonine-protein
kinase orb6 [Schizosaccharomyces pombe]
Length = 551
Score = 27.1 bits (57), Expect = 5.1
Identities = 14/51 (27%), Positives = 24/51 (47%)
Frame = +1
Query: 7 ALTNLRVAKVTGGVASKLSKLRVVSKAIARVYIVYHQKMKVNLRNHYKNKK 159
A +N++ T G LS + A A++YI H KM++ K ++
Sbjct: 25 ATSNVKEGPKTAGGEEALSNITKEKAAAAKLYIENHYKMQMQSLQERKERR 75
>At5g46840.1 68418.m05771 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 501
Score = 26.6 bits (56), Expect = 6.7
Identities = 13/46 (28%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Frame = +1
Query: 76 VSKAIARVYIVYHQKMKVN--LRNHYKNKKYKPLDLRAKKTRAMRK 207
+S+A+ +V +K + + N Y+ KKY ++++ KK RK
Sbjct: 103 ISEAVEESGLVSKRKKRKRDEIENEYETKKYGSVEMKEKKVGEKRK 148
>At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S
RIBOSOMAL PROTEIN L7A - Oryza sativa,
SWISSPROT:RL7A_ORYSA
Length = 256
Score = 26.6 bits (56), Expect = 6.7
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +1
Query: 157 KYKPLDLRAKKTRAMRKALTKHEAK 231
KY+P D AKK R + KA + E K
Sbjct: 92 KYRPEDKAAKKERLLNKAQAEAEGK 116
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,707,408
Number of Sequences: 28952
Number of extensions: 90396
Number of successful extensions: 346
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 341
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 346
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 635399168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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