Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_F_O12
(817 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC22H10.12c |gdi1|sec19|GDP dissociation inhibitor Gdi1 |Schiz... 294 1e-80
SPBC15C4.03 |||Rab geranylgeranyltransferase escort protein |Sch... 65 1e-11
SPBC713.12 |erg1||squalene monooxygenase Erg1 |Schizosaccharomyc... 33 0.064
SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces ... 30 0.34
SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual 27 2.4
SPBC2G2.11 |||N-myristoyltransferase 1|Schizosaccharomyces pombe... 27 4.2
SPBC1289.02c |uap2||U2 snRNP-associated protein Uap2|Schizosacch... 26 5.6
SPAC17H9.03c |rdl1||RAD51D-like protein 1|Schizosaccharomyces po... 26 5.6
SPAPB17E12.08 |||N-glycosylation protein |Schizosaccharomyces po... 26 7.4
SPCC777.14 |prp4||serine/threonine protein kinase Prp4|Schizosac... 26 7.4
SPAC17A2.05 |||fumerate reductase|Schizosaccharomyces pombe|chr ... 25 9.7
>SPAC22H10.12c |gdi1|sec19|GDP dissociation inhibitor Gdi1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 440
Score = 294 bits (721), Expect = 1e-80
Identities = 146/250 (58%), Positives = 179/250 (71%), Gaps = 1/250 (0%)
Frame = +1
Query: 70 MDEEYDVIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESASITPLEELFAKFN-AP 246
MDEEYDVIVLGTGL EC+LSG+LSV GKKVLHIDRN YYG +SAS+ L +L+A F
Sbjct: 1 MDEEYDVIVLGTGLTECVLSGLLSVDGKKVLHIDRNDYYGADSASLN-LTQLYALFRPGE 59
Query: 247 APDETYGRGRDWNVDLIPKFLMANGLLVKLLIHTGVTRYLEFKSIEGSYVYKGGKISKVP 426
E+ GR RDW VDL+PKFLMANG L +LI+T VTRY+EFK I GSYVY+ G+I+KVP
Sbjct: 60 QRPESLGRDRDWCVDLVPKFLMANGDLTNILIYTDVTRYIEFKQIAGSYVYRDGRIAKVP 119
Query: 427 VDQKEALASDLMGMFEKRRFRNFLIYVQDFQEEDAKTWKDFDPSTANMQSLYDKFGLXRN 606
++ EAL S LM +FEKRR + FL +V +++E+D T+KD + +M+S++ KFGL
Sbjct: 120 GNEMEALKSPLMSLFEKRRAKKFLEWVNNYREDDPSTYKDINIDRDSMESVFKKFGLQSG 179
Query: 607 TQDFTGHALALYLDDNYLQQPAIXTIRRIKLYSDXXXXXXXXXXXXXXXXXGELPQGXAR 786
TQDF GHA+ALYLDD YL++PA T RI LY+ GELPQG AR
Sbjct: 180 TQDFIGHAMALYLDDAYLKKPARETRERILLYASSIAKFGKSPYIYPLYGLGELPQGFAR 239
Query: 787 LSAIYGGTYM 816
LSAIYGGTYM
Sbjct: 240 LSAIYGGTYM 249
>SPBC15C4.03 |||Rab geranylgeranyltransferase escort protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 459
Score = 65.3 bits (152), Expect = 1e-11
Identities = 69/271 (25%), Positives = 110/271 (40%), Gaps = 26/271 (9%)
Frame = +1
Query: 82 YDVIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESASIT--PLEELFAKFNAPAPD 255
YDVI++GT L+ ILS LS + ++VLHID N +YG S+T LE++ K
Sbjct: 7 YDVIIVGTNLRNSILSAALSWANQRVLHIDENSFYGEIDGSLTLRDLEQINEKIKKVDSS 66
Query: 256 ETYGRG------------RDWNVDLIPK-----------FLMANGLLVKLLIHTGVTRYL 366
+ + N DLIPK + A+ LVKLL T + +YL
Sbjct: 67 QILNDNGSHKSPLKRFEVQFLNKDLIPKNKGSVIQFHPQEIFASSELVKLLSETKIYKYL 126
Query: 367 EFKSIEG-SYVYKGGKISKVPVDQKEALASDLMGMFEKRRFRNFLIYVQDFQEEDAKTWK 543
K + + KVP + + + + + KR F+ +V + +E +
Sbjct: 127 LLKPARSFRLLTSNEEWIKVPESRADIFNNKNLSLASKRIVMRFMKFVSNIADEQNQNLV 186
Query: 544 DFDPSTANMQSLYDKFGLXRNTQDFTGHALALYLDDNYLQQPAIXTIRRIKLYSDXXXXX 723
S + L + F L ++ + L L + + A+ T+ +K +
Sbjct: 187 KEWESKPFYKFLEEVFQLSGAIEESIIYGLCQSLSKDIPTKDALDTV--LKYFHSFGMYG 244
Query: 724 XXXXXXXXXXXXGELPQGXARLSAIYGGTYM 816
EL QG R SA+ GGT+M
Sbjct: 245 DYSYLLAMYGTGSELCQGFCRSSAVMGGTFM 275
>SPBC713.12 |erg1||squalene monooxygenase Erg1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 457
Score = 32.7 bits (71), Expect = 0.064
Identities = 12/34 (35%), Positives = 22/34 (64%)
Frame = +1
Query: 76 EEYDVIVLGTGLKECILSGMLSVSGKKVLHIDRN 177
++ D+I++G G+ C L L G+KVL ++R+
Sbjct: 4 QDADIIIIGAGITGCALGAALGRQGRKVLVLERD 37
>SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 615
Score = 30.3 bits (65), Expect = 0.34
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = -2
Query: 69 YDSVKDQLDLTNYXLKKKIIG 7
YDSV+DQLD +Y K +++G
Sbjct: 149 YDSVQDQLDANDYEAKNQVLG 169
>SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 684
Score = 27.5 bits (58), Expect = 2.4
Identities = 15/57 (26%), Positives = 27/57 (47%)
Frame = +1
Query: 148 GKKVLHIDRNKYYGGESASITPLEELFAKFNAPAPDETYGRGRDWNVDLIPKFLMAN 318
GKK + +RN Y ++ PL K + P+ ++ + +D N D + L+ N
Sbjct: 2 GKKSVSFNRNNYKKRKNERTEPLPRRIFKNDKPSKFKSKRKEKDKNSDAYDEMLLNN 58
>SPBC2G2.11 |||N-myristoyltransferase 1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 466
Score = 26.6 bits (56), Expect = 4.2
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +1
Query: 214 LEELFAKFNAPAPDETYGRGRDWNVDLIPKF 306
L L K A AP +TY + W +PKF
Sbjct: 32 LRSLIEKEEAAAPPKTYEDFKFWKTQPVPKF 62
>SPBC1289.02c |uap2||U2 snRNP-associated protein
Uap2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 367
Score = 26.2 bits (55), Expect = 5.6
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +1
Query: 490 NFLIYVQDFQEEDAKTWKDFDPSTANM 570
N LIY+ + Q TWKD+DP++ M
Sbjct: 22 NELIYIDEEQ-----TWKDYDPNSLKM 43
>SPAC17H9.03c |rdl1||RAD51D-like protein 1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 230
Score = 26.2 bits (55), Expect = 5.6
Identities = 10/24 (41%), Positives = 18/24 (75%)
Frame = +2
Query: 137 CRFLGRRFCTSIAISTTVVNLRQL 208
CR L R+F ++ +ST++V ++QL
Sbjct: 116 CRILTRKFRLAVYLSTSLVYIKQL 139
>SPAPB17E12.08 |||N-glycosylation protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 166
Score = 25.8 bits (54), Expect = 7.4
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +1
Query: 244 PAPDETYGRGRDWNVDLIPKFLMANGLLVKLLIHTGV 354
P P + G + + V F++ANG L+K LIH +
Sbjct: 14 PRPAQALGINQPF-VSAYLSFVLANGFLLKWLIHYSI 49
>SPCC777.14 |prp4||serine/threonine protein kinase
Prp4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 477
Score = 25.8 bits (54), Expect = 7.4
Identities = 26/86 (30%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Frame = -2
Query: 471 KHAHKIRRKSFFLIDRYFGDFSTFVNITSFDGLKLQVPGDARVNKQFD*QSISHQKLRNQ 292
K +HK+ ++S FL D + DF+ F+ I D + Q + R +F S + +R++
Sbjct: 378 KFSHKMLKRSQFLNDHFDADFN-FIQI-DHDPITNQ---ETRKPVKF---SKPTKDIRSR 429
Query: 291 V-NVPVSTSTVCFIRCRCVELSEQLL 217
+ VP ST IR ++L E+ L
Sbjct: 430 LKEVPTSTDEEFIIRQELMDLLEKCL 455
>SPAC17A2.05 |||fumerate reductase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 513
Score = 25.4 bits (53), Expect = 9.7
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +1
Query: 91 IVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGES 198
IV+G GL + + G VL +D+N +GG S
Sbjct: 42 IVIGGGLAGLSATNTILDLGGNVLLLDKNTAFGGNS 77
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,471,793
Number of Sequences: 5004
Number of extensions: 74244
Number of successful extensions: 221
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 219
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 398435810
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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