Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_F_O12
(817 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_30272| Best HMM Match : GDI (HMM E-Value=0) 298 4e-81
SB_2490| Best HMM Match : No HMM Matches (HMM E-Value=.) 105 4e-23
SB_9517| Best HMM Match : GDI (HMM E-Value=1.8e-14) 87 1e-17
SB_16877| Best HMM Match : Mito_carr (HMM E-Value=0) 75 7e-14
SB_47418| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.48
SB_24750| Best HMM Match : Rad10 (HMM E-Value=5.1) 31 1.1
SB_14837| Best HMM Match : UCH (HMM E-Value=1.10002e-42) 30 2.0
SB_1949| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.0
SB_27497| Best HMM Match : Death (HMM E-Value=0.028) 30 2.6
SB_46217| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.0
SB_19418| Best HMM Match : Mucin (HMM E-Value=0.024) 28 7.9
>SB_30272| Best HMM Match : GDI (HMM E-Value=0)
Length = 1199
Score = 298 bits (731), Expect = 4e-81
Identities = 142/256 (55%), Positives = 180/256 (70%), Gaps = 7/256 (2%)
Frame = +1
Query: 70 MDEEYDVIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESASITPLEELFAKFN-AP 246
MD EYD +VLGTGLKEC+LSG+LS++ KKVLH+DRNKYYGG+ AS+ PL +L+ F
Sbjct: 1 MDAEYDYVVLGTGLKECVLSGLLSLNKKKVLHMDRNKYYGGDCASLHPLNQLYETFGRTD 60
Query: 247 APDETYGRGRDWNVDLIPKFLMANGLLVKLLIHTGV-TRYLEFKSIEGSYVYKGGKISKV 423
P ++ G+ RD+NVDLIPKFLMA+G LVK+L+HTGV T+Y+ FK IEGS+VY+GG + KV
Sbjct: 61 FPGDSLGKPRDYNVDLIPKFLMADGTLVKILVHTGVATKYMNFKQIEGSFVYRGGSVHKV 120
Query: 424 PVDQKEALASDLMGMFEKRRFRNFLIYVQDFQEEDAKTWKD-----FDPSTANMQSLYDK 588
P ++KEAL S LMG+FEKRRFRNFLI+ + E+A TWKD FDP M ++
Sbjct: 121 PANEKEALNSSLMGIFEKRRFRNFLIFALGVEPENASTWKDYAGGNFDPKKTTMNDVFKA 180
Query: 589 FGLXRNTQDFTGHALALYLDDNYLQQPAIXTIRRIKLYSDXXXXXXXXXXXXXXXXXGEL 768
+ L ++T DFTGHA+ALY DD Y+ +P I RIKLY GEL
Sbjct: 181 YDLSQDTADFTGHAIALYRDDEYMSKPCEEAIMRIKLYYQSLSKYGGSPYIYPVYGLGEL 240
Query: 769 PQGXARLSAIYGGTYM 816
PQG ARL A++GGTYM
Sbjct: 241 PQGFARLCAVWGGTYM 256
>SB_2490| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 97
Score = 105 bits (252), Expect = 4e-23
Identities = 48/74 (64%), Positives = 58/74 (78%), Gaps = 4/74 (5%)
Frame = +1
Query: 115 ECILSGMLSVSGKKVLHIDRNKYYGGESASITPLEELFAKFNAPAPDE----TYGRGRDW 282
ECILSG LSV+GKKVLH+D K+YGGE+AS+TPL +LF KFN P E +GR RDW
Sbjct: 19 ECILSGALSVAGKKVLHMDSQKFYGGETASLTPLSQLFDKFNRSMPKEEIEKRFGRERDW 78
Query: 283 NVDLIPKFLMANGL 324
NVDL+PKF+MA G+
Sbjct: 79 NVDLVPKFIMAGGI 92
>SB_9517| Best HMM Match : GDI (HMM E-Value=1.8e-14)
Length = 175
Score = 87.4 bits (207), Expect = 1e-17
Identities = 41/83 (49%), Positives = 51/83 (61%)
Frame = +1
Query: 568 MQSLYDKFGLXRNTQDFTGHALALYLDDNYLQQPAIXTIRRIKLYSDXXXXXXXXXXXXX 747
M +Y KFGL NT DF GHA+AL ++D+Y QP T+ +IKLY++
Sbjct: 1 MTEVYQKFGLDANTADFVGHAMALEINDSYKDQPFGQTVEKIKLYNESLSRYGKSPYLYP 60
Query: 748 XXXXGELPQGXARLSAIYGGTYM 816
GE+PQG ARLSAIYGGTYM
Sbjct: 61 LYGLGEIPQGFARLSAIYGGTYM 83
>SB_16877| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 1024
Score = 74.9 bits (176), Expect = 7e-14
Identities = 51/182 (28%), Positives = 82/182 (45%), Gaps = 2/182 (1%)
Frame = +1
Query: 274 RDWNVDLIPKFLMANGLLVKLLIHTGVTRYLEFKSIEGSYVYKGGKISKVPVDQKEALAS 453
R +N+DL PK L++ G LV+ LI ++ Y EFK++ + G + VP + + +S
Sbjct: 323 RQFNIDLAPKLLLSRGALVESLISANISHYAEFKAVNQILTFLEGSMEAVPCSRSDVFSS 382
Query: 454 DLMGMFEKRRFRNFLIYVQDFQE--EDAKTWKDFDPSTANMQSLYDKFGLXRNTQDFTGH 627
L+ + EKR FL + D E E+ K ++D P ++S + N Q F H
Sbjct: 383 KLIPVIEKRLLMKFLTFCLDHNEHLEEYKPFED-KPFVEFLKSR----RMTPNLQHFVIH 437
Query: 628 ALALYLDDNYLQQPAIXTIRRIKLYSDXXXXXXXXXXXXXXXXXGELPQGXARLSAIYGG 807
A+A+ D I + + + GELPQ R+ A++GG
Sbjct: 438 AIAMVKPDAL----TIDGLNAAQSFLMSLGRYGNSPFIWPLYGLGELPQAYCRMCAVFGG 493
Query: 808 TY 813
Y
Sbjct: 494 LY 495
Score = 56.8 bits (131), Expect = 2e-08
Identities = 26/44 (59%), Positives = 31/44 (70%)
Frame = +1
Query: 79 EYDVIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESASIT 210
EYD IVLGTGL E +++ LS G KVLH+DRN YY + AS T
Sbjct: 7 EYDAIVLGTGLPEAVVAAALSRIGLKVLHLDRNDYYSSQWASFT 50
>SB_47418| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 635
Score = 32.3 bits (70), Expect = 0.48
Identities = 12/39 (30%), Positives = 26/39 (66%)
Frame = +1
Query: 76 EEYDVIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGG 192
+E D +V+G+G+ + +L+ +GKK+L ++++ GG
Sbjct: 84 DEVDAVVIGSGIGGMTCASLLAKTGKKILVLEQHDQAGG 122
>SB_24750| Best HMM Match : Rad10 (HMM E-Value=5.1)
Length = 576
Score = 31.1 bits (67), Expect = 1.1
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = -3
Query: 638 RARACPVKSWVFLXNPNLSYSDCMFAVEGSKS 543
R R C W F+ P++ Y + F V GSKS
Sbjct: 111 RLRVCVHNGWTFVSEPHMVYLEPEFEVGGSKS 142
>SB_14837| Best HMM Match : UCH (HMM E-Value=1.10002e-42)
Length = 1712
Score = 30.3 bits (65), Expect = 2.0
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +2
Query: 329 SNCLFTRASPGTWSLSPSKEVMFTKVEKSPKYL 427
SNC+ T+ S T L P+K+V+ + + PK L
Sbjct: 693 SNCINTKDSDQTTKLRPNKDVIMDEPHRDPKQL 725
>SB_1949| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 528
Score = 30.3 bits (65), Expect = 2.0
Identities = 15/51 (29%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Frame = -1
Query: 298 ESSQRSSLDLDRMFHQV-PVR*T*RTAPLTG*LTQIHHRSTYCDRCAKPSS 149
+++Q + D+D + P++ T +P TG + +H ++T DR A+P+S
Sbjct: 260 DNTQANVTDIDEAIAKARPIKITEDASPTTG-TSGVHQKATVIDRAARPAS 309
>SB_27497| Best HMM Match : Death (HMM E-Value=0.028)
Length = 892
Score = 29.9 bits (64), Expect = 2.6
Identities = 15/54 (27%), Positives = 29/54 (53%)
Frame = +1
Query: 358 RYLEFKSIEGSYVYKGGKISKVPVDQKEALASDLMGMFEKRRFRNFLIYVQDFQ 519
R+L+F+ + S + KG K+P + E +A ++ + +R F L Y+ D +
Sbjct: 368 RWLQFEKVVASLIEKGFNSIKLP--EAERIAEEVCQIDNEREFLTLLNYLHDLK 419
>SB_46217| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 882
Score = 28.7 bits (61), Expect = 6.0
Identities = 16/57 (28%), Positives = 27/57 (47%)
Frame = +3
Query: 375 VHRRKLCLQRWKNLQSTCRSERSSCV*SYGHV*EEAFPQLLNLRSRFPGRRCQDMEG 545
+H + CL K+ ++ S+ + SYG + P LL + +RF C +EG
Sbjct: 345 MHHIRNCLPELKSRVNSMTSQYHHLLQSYGEPVMDKGPYLLQMITRFAATYCSIIEG 401
>SB_19418| Best HMM Match : Mucin (HMM E-Value=0.024)
Length = 1213
Score = 28.3 bits (60), Expect = 7.9
Identities = 17/45 (37%), Positives = 24/45 (53%)
Frame = -2
Query: 492 VAETPLLKHAHKIRRKSFFLIDRYFGDFSTFVNITSFDGLKLQVP 358
V++T L ++ IR I+ YFG+ + VNI D K QVP
Sbjct: 735 VSDTSLPEYTSVIRN-----IEEYFGNLTASVNILEVDLTKCQVP 774
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,770,724
Number of Sequences: 59808
Number of extensions: 553548
Number of successful extensions: 1210
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1203
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2275631710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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