Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_F_O12
(817 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g44100.1 68415.m05484 Rab GDP dissociation inhibitor (GDI1) i... 274 6e-74
At3g59920.1 68416.m06687 Rab GDP dissociation inhibitor (GDI2) i... 270 7e-73
At5g09550.1 68418.m01106 Rab GDP dissociation inhibitor, putativ... 186 2e-47
At3g06540.1 68416.m00758 GDP dissociation inhibitor family prote... 52 6e-07
At4g19380.1 68417.m02853 alcohol oxidase-related similar to long... 33 0.23
At4g37190.1 68417.m05265 expressed protein 32 0.52
At3g23410.1 68416.m02951 alcohol oxidase-related similar to long... 30 2.1
At1g06820.1 68414.m00727 carotenoid isomerase, putative similar ... 29 4.9
At5g24155.1 68418.m02841 squalene monooxygenase, putative / squa... 28 6.4
At3g01840.1 68416.m00125 protein kinase family protein contains ... 28 6.4
At1g79020.1 68414.m09214 transcription factor-related similar to... 28 6.4
At5g04340.1 68418.m00426 zinc finger (C2H2 type) family protein ... 28 8.5
At4g36070.1 68417.m05135 calcium-dependent protein kinase family... 28 8.5
>At2g44100.1 68415.m05484 Rab GDP dissociation inhibitor (GDI1)
identical to GDP dissociation inhibitor [Arabidopsis
thaliana] GI:1655424
Length = 445
Score = 274 bits (671), Expect = 6e-74
Identities = 137/251 (54%), Positives = 171/251 (68%), Gaps = 2/251 (0%)
Frame = +1
Query: 70 MDEEYDVIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESASITPLEELFAKFNAPA 249
MDEEY+VIVLGTGLKECILSG+LSV G KVLH+DRN YYGGES S+ L +L+ KF
Sbjct: 1 MDEEYEVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESTSLN-LNQLWKKFRGEE 59
Query: 250 PDETY-GRGRDWNVDLIPKFLMANGLLVKLLIHTGVTRYLEFKSIEGSYVYKGGKISKVP 426
+ G RD+NVD++PKF+MANG LV++LIHT VT+YL FK+++GSYV+ GK+ KVP
Sbjct: 60 KAPAHLGSSRDYNVDMMPKFMMANGKLVRVLIHTDVTKYLSFKAVDGSYVFVQGKVQKVP 119
Query: 427 VDQKEALASDLMGMFEKRRFRNFLIYVQDFQEEDAKTWKDFDPSTANMQSLYDKFGLXRN 606
EAL S LMG+FEKRR F YVQ++ E+D KT D + L KFGL +
Sbjct: 120 ATPMEALKSPLMGIFEKRRAGKFFSYVQEYDEKDPKTHDGMDLRRVTTKDLIAKFGLKED 179
Query: 607 TQDFTGHALALYLDDNYLQQPAIXTIRRIKLYSD-XXXXXXXXXXXXXXXXXGELPQGXA 783
T DF GHA+AL+ +DN+L QPA T+ R+KLY++ GELPQ A
Sbjct: 180 TIDFIGHAVALHCNDNHLHQPAYDTVMRMKLYAESLARFQGGSPYIYPLYGLGELPQAFA 239
Query: 784 RLSAIYGGTYM 816
RLSA+YGGTYM
Sbjct: 240 RLSAVYGGTYM 250
>At3g59920.1 68416.m06687 Rab GDP dissociation inhibitor (GDI2)
identical to Rab GDP dissociation inhibitor AtGDI2
[Arabidopsis thaliana] GI:2446981
Length = 444
Score = 270 bits (662), Expect = 7e-73
Identities = 137/252 (54%), Positives = 171/252 (67%), Gaps = 3/252 (1%)
Frame = +1
Query: 70 MDEEYDVIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESASITPLEELFAKFNAP- 246
MDEEY+VIVLGTGLKECILSG+LSV G KVLH+DRN YYGGES S+ L +L+ KF
Sbjct: 1 MDEEYEVIVLGTGLKECILSGLLSVDGVKVLHMDRNDYYGGESTSLN-LNQLWKKFRGEE 59
Query: 247 -APDETYGRGRDWNVDLIPKFLMANGLLVKLLIHTGVTRYLEFKSIEGSYVYKGGKISKV 423
AP E G RD+NVD++PKF+M NG LV+ LIHT VT+YL FK+++GSYV+ GK+ KV
Sbjct: 60 KAP-EHLGASRDYNVDMMPKFMMGNGKLVRTLIHTDVTKYLSFKAVDGSYVFVKGKVQKV 118
Query: 424 PVDQKEALASDLMGMFEKRRFRNFLIYVQDFQEEDAKTWKDFDPSTANMQSLYDKFGLXR 603
P EAL S LMG+FEKRR F +VQ++ E+D KT D + + L K+GL
Sbjct: 119 PATPMEALKSSLMGIFEKRRAGKFFSFVQEYDEKDPKTHDGMDLTRVTTKELIAKYGLDG 178
Query: 604 NTQDFTGHALALYLDDNYLQQPAIXTIRRIKLYSD-XXXXXXXXXXXXXXXXXGELPQGX 780
NT DF GHA+AL+ +D +L QPA T+ R+KLY++ GELPQ
Sbjct: 179 NTIDFIGHAVALHTNDQHLDQPAFDTVMRMKLYAESLARFQGTSPYIYPLYGLGELPQAF 238
Query: 781 ARLSAIYGGTYM 816
ARLSA+YGGTYM
Sbjct: 239 ARLSAVYGGTYM 250
>At5g09550.1 68418.m01106 Rab GDP dissociation inhibitor, putative
strong similarity to GDP dissociation inhibitor protein
OsGDI1 [Oryza sativa] GI:2384758; contains Pfam profile
PF00996: GDP dissociation inhibitor
Length = 365
Score = 186 bits (453), Expect = 2e-47
Identities = 93/170 (54%), Positives = 115/170 (67%), Gaps = 1/170 (0%)
Frame = +1
Query: 310 MANGLLVKLLIHTGVTRYLEFKSIEGSYVYKGGKISKVPVDQKEALASDLMGMFEKRRFR 489
MANGLLV+ LIHT VT+YL FK+++GS+VYK GKI KVP EAL S LMG+FEKRR R
Sbjct: 1 MANGLLVQTLIHTDVTKYLNFKAVDGSFVYKKGKIYKVPATDVEALKSPLMGLFEKRRAR 60
Query: 490 NFLIYVQDFQEEDAKTWKDFDPSTANMQSLYDKFGLXRNTQDFTGHALALYLDDNYLQQP 669
F IYVQD+ E+D K+ + D S + + K+GL +T DF GHALAL+ DD+YL QP
Sbjct: 61 KFFIYVQDYDEKDPKSHEGLDLSKVTAREIISKYGLEDDTIDFIGHALALHNDDDYLDQP 120
Query: 670 AIXTIRRIKLYSD-XXXXXXXXXXXXXXXXXGELPQGXARLSAIYGGTYM 816
AI ++RIKLY++ GELPQ ARLSA+YGGTYM
Sbjct: 121 AIDFVKRIKLYAESLARFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYM 170
>At3g06540.1 68416.m00758 GDP dissociation inhibitor family protein
/ Rab GTPase activator family protein similar to
SP|P26374 Rab proteins geranylgeranyltransferase
component A 2 (Rab escort protein 2) {Homo sapiens};
contains Pfam profile PF00996: GDP dissociation
inhibitor
Length = 563
Score = 51.6 bits (118), Expect = 6e-07
Identities = 27/71 (38%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Frame = +1
Query: 43 IELIFYTIIMDEEYDVIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESASIT-PLE 219
I++ Y + YD+IV+GTG+ E +L+ S SG VLH+D N +YG AS++ P
Sbjct: 2 IDIPPYPPLDPSNYDLIVVGTGVSESVLAAAASSSGSSVLHLDPNPFYGSHFASLSLPDL 61
Query: 220 ELFAKFNAPAP 252
F N+ +P
Sbjct: 62 TSFLHSNSVSP 72
Score = 43.2 bits (97), Expect = 2e-04
Identities = 52/198 (26%), Positives = 85/198 (42%), Gaps = 17/198 (8%)
Frame = +1
Query: 274 RDWNVDLI-PKFLMANGLLVKLLIHTGVTRYLEFKSIEGSYV-YKGGKISKVPVDQKEAL 447
R +NVDL P+ + + L++ +G Y+EFKSI+ S+V G++ VP D + A+
Sbjct: 118 RRFNVDLAGPRVVFCADESINLMLKSGANNYVEFKSIDASFVGDSSGELRNVP-DSRAAI 176
Query: 448 ASD-LMGMFEKRRFRNFLIYVQDF-----QEEDAKTWK-DFDPSTANMQSLYDKFGLXRN 606
D + + EK + F VQ +++D+ T K + + K L
Sbjct: 177 FKDKSLTLLEKNQLMKFFKLVQSHLASSTEKDDSTTVKISEEDMESPFVDFLSKMRLPPK 236
Query: 607 TQDFTGHALAL--YLDDN-YLQQPAIXT---IRRIKLY--SDXXXXXXXXXXXXXXXXXG 762
+ +A+A+ Y DN + + T I R+ LY S G
Sbjct: 237 IKSIILYAIAMLDYDQDNTETCRHLLKTKEGIDRLALYITSMGRFSNALGALIYPIYGQG 296
Query: 763 ELPQGXARLSAIYGGTYM 816
ELPQ R +A+ G Y+
Sbjct: 297 ELPQAFCRRAAVKGCIYV 314
>At4g19380.1 68417.m02853 alcohol oxidase-related similar to long
chain fatty alcohol oxidase from Candida cloacae
[GI:6983581], Candida tropicalis [GI:6983594]
Length = 726
Score = 33.1 bits (72), Expect = 0.23
Identities = 15/47 (31%), Positives = 27/47 (57%)
Frame = +1
Query: 67 IMDEEYDVIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESASI 207
+M + D +V+G+G + +G+L+ +G KVL I+ YY S+
Sbjct: 219 VMKIQCDAVVVGSGSGGGVAAGVLAKAGYKVLVIESGNYYARSKLSL 265
>At4g37190.1 68417.m05265 expressed protein
Length = 562
Score = 31.9 bits (69), Expect = 0.52
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = +1
Query: 520 EEDAKTWKDFDPSTANMQSLYDKFGLXRNTQDFTGHAL 633
+E+ + W DF S + QSLY+ GL ++Q F + +
Sbjct: 146 DEEVECWTDFSKSHYHPQSLYELNGLWMDSQAFNNYGI 183
>At3g23410.1 68416.m02951 alcohol oxidase-related similar to long
chain fatty alcohol oxidase from Candida cloacae
[GI:6983581], Candida tropicalis [GI:6983594]
Length = 746
Score = 29.9 bits (64), Expect = 2.1
Identities = 19/63 (30%), Positives = 32/63 (50%)
Frame = +1
Query: 85 DVIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESASITPLEELFAKFNAPAPDETY 264
DV+V+G+G + + +L+ SG KV+ +++ Y+ TP E F P D+ Y
Sbjct: 234 DVVVVGSGSGGGVAASVLAKSGLKVVVLEKGSYF-------TPSEH--RPFEGPGLDKLY 284
Query: 265 GRG 273
G
Sbjct: 285 ENG 287
>At1g06820.1 68414.m00727 carotenoid isomerase, putative similar to
carotenoid isomerase from Lycopersicon esculentum
[gi:19550437]; contains Pfam profile: PF02032 Phytoene
dehydrogenase related enzyme
Length = 595
Score = 28.7 bits (61), Expect = 4.9
Identities = 13/39 (33%), Positives = 23/39 (58%)
Frame = +1
Query: 82 YDVIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGES 198
YD IV+G+G+ + + L+V +VL +++ GG S
Sbjct: 78 YDAIVIGSGIGGLVAATQLAVKEARVLVLEKYLIPGGSS 116
>At5g24155.1 68418.m02841 squalene monooxygenase, putative /
squalene epoxidase, putative similar to SP|O65404 (SE
1,1), SP|O65402 (SE 1,2)
Length = 121
Score = 28.3 bits (60), Expect = 6.4
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = +1
Query: 73 DEEYDVIVLGTGLKECILSGMLSVSGKKVLHIDRN 177
D DVI++G G+ L+ L+ G++VL I+R+
Sbjct: 45 DSAADVIIVGAGVGGSALAYSLAKDGRRVLAIERD 79
>At3g01840.1 68416.m00125 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 654
Score = 28.3 bits (60), Expect = 6.4
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = -1
Query: 595 TQTYRTATACLQLRDQNPSMSWHLLPGNLERRL 497
+Q+ + T CL +R++NP +S L N++ RL
Sbjct: 125 SQSLQGLTTCLSIREKNPHISEDKLGDNIKLRL 157
>At1g79020.1 68414.m09214 transcription factor-related similar to
enhancer of polycomb (GI:3757890) [Drosophila
melanogaster]; similar to enhancer of polycomb
(GI:11907923) [Homo sapiens]
Length = 453
Score = 28.3 bits (60), Expect = 6.4
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = -2
Query: 510 LNVD*EVAETPLLKHAHKIRRKSFFLIDRYFGDFS-TFVNITSF 382
+ VD EVA P K A +I F ++D Y D+S TF S+
Sbjct: 47 VEVDNEVAPVPSKKPASEIPTPQFVIVDTYERDYSPTFGQPASY 90
>At5g04340.1 68418.m00426 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 238
Score = 27.9 bits (59), Expect = 8.5
Identities = 19/61 (31%), Positives = 32/61 (52%)
Frame = +1
Query: 139 SVSGKKVLHIDRNKYYGGESASITPLEELFAKFNAPAPDETYGRGRDWNVDLIPKFLMAN 318
++ G K H + K GG S+S++ E++ + + + RG D N+ IP+F M N
Sbjct: 162 ALGGHKRCHYE-GKNGGGVSSSVSNSEDVGSTSHVSSGH----RGFDLNIPPIPEFSMVN 216
Query: 319 G 321
G
Sbjct: 217 G 217
>At4g36070.1 68417.m05135 calcium-dependent protein kinase family
protein / CDPK family protein contains Pfam domains,
PF00069: Protein kinase domain and PF00036: EF hand
Length = 536
Score = 27.9 bits (59), Expect = 8.5
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = +1
Query: 313 ANGLLVKLLIHTGVTRYLEFKSIEGSYVYKGGKISKVPVD 432
A + KLL+ R +++ S+V +GG+ S+VP+D
Sbjct: 301 AKDFVKKLLVKEPRARLTAAQALSHSWVKEGGEASEVPID 340
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,055,224
Number of Sequences: 28952
Number of extensions: 393384
Number of successful extensions: 982
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 949
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 977
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1863090400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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