Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_O11
         (809 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...   132   4e-33
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           25   0.71 
AM292337-1|CAL23149.2|  452|Tribolium castaneum gustatory recept...    21   8.8  

>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score =  132 bits (318), Expect = 4e-33
 Identities = 76/199 (38%), Positives = 118/199 (59%), Gaps = 7/199 (3%)
 Frame = +3

Query: 201 AFQSMGLSFPVLKGITKRGYKQPTPIQRKTIPIALTGKDVVAMARTGSGKTACFVLPILE 380
           +F++ GL   +L+ + K GY +PT IQ+  IP+ L+G+D+++ A+TGSGKTA F+LPI+ 
Sbjct: 159 SFETSGLRPHLLENVKKSGYTKPTAIQKYAIPVILSGRDLMSCAQTGSGKTAAFMLPIIH 218

Query: 381 KLLVPNNKPTPGKNLR---ALILSPTRELALQTLRFVRELGKFTGLTSAAILGGESIEQQ 551
            LL   N P    N      +I+SPTRELA+Q     ++    + +  A I GG S   Q
Sbjct: 219 NLLSDKNPPNTENNCAQPVVVIMSPTRELAIQIADQGKKFAYNSTVKVAVIYGGTSTNHQ 278

Query: 552 FNVMSGSSPDIVVATPGRFLHICIEMCLKLDNIKIVVFDEADRLFELGFGEQLQEICAR- 728
              + G    I+VATPGR         +  +++K  V DEADR+ ++GF   ++E+ +  
Sbjct: 279 RGRILGGC-HILVATPGRLKDFVNRGNVSFNSLKYFVLDEADRMLDMGFLGDVEEMLSHQ 337

Query: 729 -LPSS--RQTLLFSATLPK 776
            +P++  RQTL+FSAT P+
Sbjct: 338 SMPATGERQTLMFSATFPE 356


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 25.0 bits (52), Expect = 0.71
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +3

Query: 450 RELALQTLRFVRELGKFTGLTSAAILG 530
           R+  ++ LR + E G+F GL S  +LG
Sbjct: 156 RQNPVKFLRAIEEYGRFFGLDSQRLLG 182


>AM292337-1|CAL23149.2|  452|Tribolium castaneum gustatory receptor
           candidate 16 protein.
          Length = 452

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +2

Query: 590 CNTWALLTHLH*DVLKVRQHQNSCF 664
           CN    L +LH +++KV +  NS +
Sbjct: 227 CNKIKHLVNLHKNLVKVAKDHNSLY 251


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,859
Number of Sequences: 336
Number of extensions: 3209
Number of successful extensions: 11
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 22102797
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)