Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_F_O11
(809 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 249 3e-67
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 178 7e-46
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 143 2e-35
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 135 8e-33
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 132 4e-32
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 130 2e-31
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 128 7e-31
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 127 2e-30
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 127 2e-30
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 126 3e-30
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 123 3e-29
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 121 1e-28
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 119 4e-28
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 117 2e-27
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 116 4e-27
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 111 1e-25
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 109 3e-25
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 109 5e-25
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 99 6e-22
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 98 1e-21
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 94 2e-20
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 89 5e-19
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 76 4e-16
SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3 |Schi... 33 0.048
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch... 33 0.063
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 31 0.15
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch... 31 0.26
SPCC550.03c |||RNA helicase involved in mRNA catabolism|Schizosa... 29 0.59
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos... 29 1.0
SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like |Schizosacch... 28 1.8
SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|c... 27 2.4
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces... 26 5.5
SPBC29A3.01 |||heavy metal ATPase |Schizosaccharomyces pombe|chr... 26 5.5
SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces pomb... 26 5.5
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch... 26 7.3
SPCC645.03c |isa1||iron-sulfur protein Isa1|Schizosaccharomyces ... 25 9.6
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 249 bits (610), Expect = 3e-67
Identities = 127/201 (63%), Positives = 156/201 (77%)
Frame = +3
Query: 204 FQSMGLSFPVLKGITKRGYKQPTPIQRKTIPIALTGKDVVAMARTGSGKTACFVLPILEK 383
FQSMGL+ +L+ I K+G+K PTPIQRKTIP+ L G+DVV MARTGSGKTA FV+P++E
Sbjct: 71 FQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEGRDVVGMARTGSGKTAAFVIPMIEH 130
Query: 384 LLVPNNKPTPGKNLRALILSPTRELALQTLRFVRELGKFTGLTSAAILGGESIEQQFNVM 563
L N RALILSP RELALQT++ V++ K T L S AI+GG S+E+QF+++
Sbjct: 131 L----KSTLANSNTRALILSPNRELALQTVKVVKDFSKGTDLRSVAIVGGVSLEEQFSLL 186
Query: 564 SGSSPDIVVATPGRFLHICIEMCLKLDNIKIVVFDEADRLFELGFGEQLQEICARLPSSR 743
SG PDIVVATPGRFLH+ +EM L+L +I+ VVFDEADRLFE+GF QL EI LP+SR
Sbjct: 187 SGK-PDIVVATPGRFLHLKVEMKLELSSIEYVVFDEADRLFEMGFAAQLTEILHALPTSR 245
Query: 744 QTLLFSATLPKMLVXFARAGL 806
QTLLFSATLP+ LV FA+AGL
Sbjct: 246 QTLLFSATLPRTLVDFAKAGL 266
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 178 bits (434), Expect = 7e-46
Identities = 98/205 (47%), Positives = 131/205 (63%), Gaps = 2/205 (0%)
Frame = +3
Query: 201 AFQSMGLSFPVLKGITKRGYKQPTPIQRKTIPIALTGKDVVAMARTGSGKTACFVLPILE 380
+FQSM LS P+LKG++ G++ PT IQ KTIP+AL GKD+V A TGSGKTA F++PILE
Sbjct: 260 SFQSMNLSRPILKGLSNLGFEVPTQIQDKTIPLALLGKDIVGAAVTGSGKTAAFIVPILE 319
Query: 381 KLLV-PNNKPTPGKNLRALILSPTRELALQTLRFVRELGKFTGLTSAAILGGESIEQQFN 557
+LL P PT R LIL PTRELA+Q ++ FT + +GG S++ Q
Sbjct: 320 RLLYRPKKVPT----TRVLILCPTRELAMQCHSVATKIASFTDIMVCLCIGGLSLKLQEQ 375
Query: 558 VMSGSSPDIVVATPGRFL-HICIEMCLKLDNIKIVVFDEADRLFELGFGEQLQEICARLP 734
+ PDIV+ATPGRF+ H+ ++NI+I+V DEADR+ E GF ++L EI P
Sbjct: 376 ELR-KRPDIVIATPGRFIDHMRNSQGFTVENIEIMVMDEADRMLEDGFADELNEIIQACP 434
Query: 735 SSRQTLLFSATLPKMLVXFARAGLS 809
SRQT+LFSAT+ + R L+
Sbjct: 435 KSRQTMLFSATMTDKVDDLIRLSLN 459
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 143 bits (347), Expect = 2e-35
Identities = 78/202 (38%), Positives = 119/202 (58%), Gaps = 1/202 (0%)
Frame = +3
Query: 204 FQSMGLSFPVLKGITKRGYKQPTPIQRKTIPIALTGKDVVAMARTGSGKTACFVLPILEK 383
F+ +G+ + + K G+K PTPIQ++ IP+ L +DV+ +A+TGSGKTA F LP++++
Sbjct: 48 FKELGVIDELCEACEKLGFKTPTPIQQEAIPVVLNKRDVIGLAQTGSGKTAAFALPVIQE 107
Query: 384 LLVPNNKPTPGKNLRALILSPTRELALQTLRFVRELGKFTGLTSAAILGGESIEQQFNVM 563
L N P+P A++L+PTRELA Q +G G+ S I+GG + Q +
Sbjct: 108 LW---NNPSP---FFAVVLAPTRELAYQISEQFEAIGGSIGVRSVVIVGGMDMVTQAVAL 161
Query: 564 SGSSPDIVVATPGRFL-HICIEMCLKLDNIKIVVFDEADRLFELGFGEQLQEICARLPSS 740
S P ++V TPGR + H+ L N+K ++ DEADRL ++ FG + +I +P
Sbjct: 162 S-KKPHVLVCTPGRLMDHLENTKGFSLKNLKYLIMDEADRLLDMDFGPIIDKILKIIPHE 220
Query: 741 RQTLLFSATLPKMLVXFARAGL 806
R+TLLFSAT+ + RA L
Sbjct: 221 RRTLLFSATMTSKVEKLQRASL 242
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 135 bits (326), Expect = 8e-33
Identities = 79/203 (38%), Positives = 120/203 (59%), Gaps = 2/203 (0%)
Frame = +3
Query: 204 FQSMGLSFPVLKGITKRGYKQPTPIQRKTIPIALTGKDVVAMARTGSGKTACFVLPILEK 383
F + LS + K I + G++ T IQ+++IP L G+DV+ A+TGSGKT F++P +E
Sbjct: 91 FSDLQLSENIQKAIKEMGFETMTEIQKRSIPPLLAGRDVLGAAKTGSGKTLAFLIPTIEM 150
Query: 384 LLVPNNKPTPGKNLRALILSPTRELALQTLRFVRELGKFTGLTSAAILGGESIEQQFNVM 563
L KP G + +I+SPTRELALQ +EL K+ T ++GG + + + +
Sbjct: 151 LYALKFKPRNGTGV--IIISPTRELALQIFGVAKELLKYHHQTFGIVIGGANRRAEADKL 208
Query: 564 SGSSPDIVVATPGRFL-HICIEMCLKLDNIKIVVFDEADRLFELGFGEQLQEICARLPS- 737
+++VATPGR L H+ N++ +V DEADR+ E+GF +++++I LPS
Sbjct: 209 V-KGVNLLVATPGRLLDHLQNTKGFVFRNLRSLVIDEADRILEIGFEDEMRQIMKILPSE 267
Query: 738 SRQTLLFSATLPKMLVXFARAGL 806
+RQTLLFSAT + AR L
Sbjct: 268 NRQTLLFSATQTTKVEDLARISL 290
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 132 bits (320), Expect = 4e-32
Identities = 74/202 (36%), Positives = 117/202 (57%), Gaps = 1/202 (0%)
Frame = +3
Query: 204 FQSMGLSFPVLKGITKRGYKQPTPIQRKTIPIALTGKDVVAMARTGSGKTACFVLPILEK 383
F + L+ P + + T IQ++ IP AL G+D++ A+TGSGKT F++P++E
Sbjct: 41 FAELPLTQPTKSALKNAHFITLTEIQKQCIPSALKGRDILGAAKTGSGKTLAFIVPLIEN 100
Query: 384 LLVPNNKPTPGKNLRALILSPTRELALQTLRFVRELGKFTGLTSAAILGGESIEQQFNVM 563
L K T L AL++SPTRELA+QT + ++G+ ++ I+GG + +++ +
Sbjct: 101 LY--RKKWTSLDGLGALVISPTRELAIQTFETLVKIGRLHSFSAGLIIGGNNYKEEKERL 158
Query: 564 SGSSPDIVVATPGRFL-HICIEMCLKLDNIKIVVFDEADRLFELGFGEQLQEICARLPSS 740
S +I+V TPGR L HI + +++++ DEADR+ ++GF L I + LP
Sbjct: 159 --SRMNILVCTPGRLLQHIDQAVNFDTSGLQMLILDEADRILDMGFRTTLDAIVSSLPVH 216
Query: 741 RQTLLFSATLPKMLVXFARAGL 806
RQT+LFSAT K + AR L
Sbjct: 217 RQTMLFSATQTKSVKDLARLSL 238
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 130 bits (314), Expect = 2e-31
Identities = 73/203 (35%), Positives = 114/203 (56%), Gaps = 4/203 (1%)
Frame = +3
Query: 201 AFQSMGLSFPVLKGITKRGYKQPTPIQRKTIPIALTGKDVVAMARTGSGKTACFVLPILE 380
++ GLS + I GY++PT IQ + IP +G+DV+ +A+TGSGKT F+LP+
Sbjct: 419 SWSQCGLSAQTISVINSLGYEKPTSIQAQAIPAITSGRDVIGVAKTGSGKTIAFLLPMFR 478
Query: 381 KLLVPNNKP-TPGKNLRALILSPTRELALQTLRFVRELGKFTGLTSAAILGGESIEQQFN 557
+ + +P G+ A+I++PTRELA+Q R + K + + GG I+ Q
Sbjct: 479 H--IKDQRPLKTGEGPIAIIMTPTRELAVQIFRECKPFLKLLNIRACCAYGGAPIKDQIA 536
Query: 558 VMSGSSPDIVVATPGRFLHICIEMCLKLDNI---KIVVFDEADRLFELGFGEQLQEICAR 728
+ + +IVV TPGR + + ++ N+ +V DEADR+F+LGF Q+ I
Sbjct: 537 DLKRGA-EIVVCTPGRMIDVLSANAGRVTNLHRCTYLVLDEADRMFDLGFEPQVMRIINN 595
Query: 729 LPSSRQTLLFSATLPKMLVXFAR 797
+ RQT+LFSAT P+ + AR
Sbjct: 596 IRPDRQTVLFSATFPRAMEALAR 618
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 128 bits (310), Expect = 7e-31
Identities = 72/196 (36%), Positives = 110/196 (56%)
Frame = +3
Query: 204 FQSMGLSFPVLKGITKRGYKQPTPIQRKTIPIALTGKDVVAMARTGSGKTACFVLPILEK 383
F+ L +L GI + G+++P+PIQ ++IPIAL+G+D++A A+ G+GKTA FV+P LEK
Sbjct: 46 FEDYYLKRELLMGIFEAGFERPSPIQEESIPIALSGRDILARAKNGTGKTAAFVIPSLEK 105
Query: 384 LLVPNNKPTPGKNLRALILSPTRELALQTLRFVRELGKFTGLTSAAILGGESIEQQFNVM 563
+ T ++ LIL PTRELALQT + + LGK + GG ++ +
Sbjct: 106 V------DTKKSKIQTLILVPTRELALQTSQVCKTLGKHMNVKVMVTTGGTTLRDDI-IR 158
Query: 564 SGSSPDIVVATPGRFLHICIEMCLKLDNIKIVVFDEADRLFELGFGEQLQEICARLPSSR 743
+ IVV TPGR L + + V DEAD+L F ++++ + P +R
Sbjct: 159 LNDTVHIVVGTPGRVLDLAGKGVADFSECTTFVMDEADKLLSPEFTPIIEQLLSYFPKNR 218
Query: 744 QTLLFSATLPKMLVXF 791
Q L+SAT P ++ F
Sbjct: 219 QISLYSATFPLIVKNF 234
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 127 bits (307), Expect = 2e-30
Identities = 71/200 (35%), Positives = 116/200 (58%), Gaps = 2/200 (1%)
Frame = +3
Query: 204 FQSMGLSFPVLKGITKRGYKQPTPIQRKTIPIALTGKDVVAMARTGSGKTACFVLPILEK 383
F+ G VLK + + G++ PTPIQ++ P+A++G+D+V ++ TGSGKT + LP +
Sbjct: 124 FEEAGFPNYVLKEVKQLGFEAPTPIQQQAWPMAMSGRDMVGISATGSGKTLSYCLPAIVH 183
Query: 384 LLVPNNKP--TPGKNLRALILSPTRELALQTLRFVRELGKFTGLTSAAILGGESIEQQFN 557
+ N +P +PG L+L+PTRELA+Q + + GK + + + + GG Q
Sbjct: 184 I---NAQPLLSPGDGPIVLVLAPTRELAVQIQQECTKFGKSSRIRNTCVYGGVPRGPQIR 240
Query: 558 VMSGSSPDIVVATPGRFLHICIEMCLKLDNIKIVVFDEADRLFELGFGEQLQEICARLPS 737
+ +I +ATPGR L + L + +V DEADR+ ++GF Q+++I ++
Sbjct: 241 DLI-RGVEICIATPGRLLDMLDSNKTNLRRVTYLVLDEADRMLDMGFEPQIRKIVDQIRP 299
Query: 738 SRQTLLFSATLPKMLVXFAR 797
RQT++FSAT PK + AR
Sbjct: 300 DRQTVMFSATWPKEVQRLAR 319
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 127 bits (306), Expect = 2e-30
Identities = 75/196 (38%), Positives = 105/196 (53%), Gaps = 1/196 (0%)
Frame = +3
Query: 192 SSGAFQSMGLSFPVLKGITKRGYKQPTPIQRKTIPIALTGKDVVAMARTGSGKTACFVLP 371
S F L + + I K +++PT +Q +TIP+AL GKD+VA ARTGSGKTA +++P
Sbjct: 12 SEKTFSDFNLDPRLQRAIHKCEFEKPTSVQSETIPLALEGKDLVAQARTGSGKTAAYLIP 71
Query: 372 ILEKLLVPNNKPTPGKNLRALILSPTRELALQTLRFVRELGKFTGLTSAAI-LGGESIEQ 548
ILE LL + + AL+L PTRELA Q + +L F I + S +
Sbjct: 72 ILELLLKQKQIDENQRGIFALLLVPTRELAQQVYNVLEKLTAFCSKHIRFINVATNSSDT 131
Query: 549 QFNVMSGSSPDIVVATPGRFLHICIEMCLKLDNIKIVVFDEADRLFELGFGEQLQEICAR 728
+ PDIV+ATP R + L LD +K +V DEAD + G+ E ++ +
Sbjct: 132 VQRPLLLDLPDIVIATPSRCVVHVASGVLPLDKLKFLVIDEADLMLSFGYNEDMKTLSRS 191
Query: 729 LPSSRQTLLFSATLPK 776
LP Q+ L SATL K
Sbjct: 192 LPRGTQSFLMSATLSK 207
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 126 bits (305), Expect = 3e-30
Identities = 73/197 (37%), Positives = 111/197 (56%), Gaps = 6/197 (3%)
Frame = +3
Query: 204 FQSMGLSFPVLKGITKRGYKQPTPIQRKTIPIALTGKDVVAMARTGSGKTACFVLPILEK 383
F + +S + +G+ + YK+PTPIQ T P L G+DVV +A TGSGKT F +P L+
Sbjct: 169 FDELDVSAKLREGL--KNYKEPTPIQAATWPYLLAGRDVVGIAETGSGKTVAFGIPALQY 226
Query: 384 LL-VPNNKPTPGKNLRALILSPTRELALQTLRFVRELGKFTGLTSAAILGGESIEQQFNV 560
L + +NK P R L++SPTRELA+QT + L + T L + + GG +Q
Sbjct: 227 LNGLSDNKSVP----RVLVVSPTRELAIQTYENLNSLIQGTNLKAVVVYGGAPKSEQARA 282
Query: 561 MSGSSPDIVVATPGRFLHICIEMCLKLDNIKIVVFDEADRLFELGFGEQLQEICARLP-- 734
+S +++ TPGR L + + + + +V DEADR+ + GF + ++ I + P
Sbjct: 283 AKNAS--VIIGTPGRLLDLINDGSIDCSQVGYLVLDEADRMLDTGFEQDIRNIISHTPDP 340
Query: 735 ---SSRQTLLFSATLPK 776
SRQT+ FSAT P+
Sbjct: 341 TRNGSRQTVFFSATWPE 357
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 123 bits (296), Expect = 3e-29
Identities = 82/223 (36%), Positives = 121/223 (54%), Gaps = 22/223 (9%)
Frame = +3
Query: 204 FQSMGLSFPVLKGITKRGYKQPTPIQRKTIPIALTGKDVVAMARTGSGKTACFVLPILEK 383
++ GL +LK + K YK+P+ IQR IP+ L KD++ +A TGSGKTA F++P++
Sbjct: 251 WEEAGLPSEMLKVLKKVNYKEPSSIQRAAIPVLLQRKDLIGIAETGSGKTAAFIIPLIIA 310
Query: 384 L--LVPNNKPTPGKNLRALILSPTRELALQTLRFVRELGKFTGLTSAAILGGESIEQQFN 557
+ L P + A++L+PTRELA Q + + G +++GG + E+Q
Sbjct: 311 ISKLPPLTESNMHLGPYAVVLAPTRELAQQIQVEGNKFAEPLGFRCVSVVGGHAFEEQSF 370
Query: 558 VMSGSSPDIVVATPGRFLHICIEMCL-KLDNIKIVVFDEADRLFELGFGEQLQEICARLP 734
MS IVVATPGR L C+E L L VV DEADR+ ++GF + + +I + LP
Sbjct: 371 QMS-QGAHIVVATPGRLLD-CLERRLFVLSQCTYVVMDEADRMLDMGFEDDVNKILSSLP 428
Query: 735 SS-------------------RQTLLFSATLPKMLVXFARAGL 806
SS RQT++FSATLP + A++ L
Sbjct: 429 SSNASEKDGSILATANSSSSRRQTIMFSATLPPRVANLAKSYL 471
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 121 bits (292), Expect = 1e-28
Identities = 81/214 (37%), Positives = 114/214 (53%), Gaps = 16/214 (7%)
Frame = +3
Query: 204 FQSMGLSFPVLKGITKRGYKQPTPIQRKTIPIALTGKDVVAMARTGSGKTACFVLPILEK 383
F S L+ +L+ I GY QPTP+Q+ +IPI +G+D++A A+TGSGKTA F+ PIL
Sbjct: 171 FTSPPLNSHLLQNIKLSGYTQPTPVQKNSIPIVTSGRDLMACAQTGSGKTAGFLFPILSL 230
Query: 384 LLVPNNKPTP-----GKNLR-------ALILSPTRELALQTLRFVRELGKFTGLTSAAIL 527
P G R LIL+PTREL Q R+ + + A+
Sbjct: 231 AFDKGPAAVPVDQDAGMGYRPRKAYPTTLILAPTRELVCQIHEESRKFCYRSWVRPCAVY 290
Query: 528 GGESIEQQFNVMSGSSPDIVVATPGRFLHICIEMCLKLDNIKIVVFDEADRLFELGFGEQ 707
GG I Q + D++ ATPGR + + + L NIK +V DEADR+ ++GF Q
Sbjct: 291 GGADIRAQIRQID-QGCDLLSATPGRLVDLIDRGRISLANIKFLVLDEADRMLDMGFEPQ 349
Query: 708 LQEIC--ARLPS--SRQTLLFSATLPKMLVXFAR 797
++ I A + S RQTL+FSAT P+ + AR
Sbjct: 350 IRHIVEGADMTSVEERQTLMFSATFPRDIQLLAR 383
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 119 bits (287), Expect = 4e-28
Identities = 69/192 (35%), Positives = 105/192 (54%)
Frame = +3
Query: 201 AFQSMGLSFPVLKGITKRGYKQPTPIQRKTIPIALTGKDVVAMARTGSGKTACFVLPILE 380
+F+ M L +L+GI GY+ P+ +Q + I G+DV+A A++G+GKTA F + IL+
Sbjct: 22 SFEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICKGRDVIAQAQSGTGKTATFSIGILQ 81
Query: 381 KLLVPNNKPTPGKNLRALILSPTRELALQTLRFVRELGKFTGLTSAAILGGESIEQQFNV 560
+ ++ +ALILSPTRELA+Q V LG + A +GG S+
Sbjct: 82 SI------DLSVRDTQALILSPTRELAVQIQNVVLALGDHMNVQCHACIGGTSVGNDIKK 135
Query: 561 MSGSSPDIVVATPGRFLHICIEMCLKLDNIKIVVFDEADRLFELGFGEQLQEICARLPSS 740
+ +V TPGR + L+ N+K+++ DEAD L GF EQ+ +I LP
Sbjct: 136 LDYGQ-HVVSGTPGRVTDMIRRRNLRTRNVKMLILDEADELLNQGFKEQIYDIYRYLPPG 194
Query: 741 RQTLLFSATLPK 776
Q ++ SATLP+
Sbjct: 195 TQVVVVSATLPQ 206
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 117 bits (282), Expect = 2e-27
Identities = 68/191 (35%), Positives = 106/191 (55%)
Frame = +3
Query: 204 FQSMGLSFPVLKGITKRGYKQPTPIQRKTIPIALTGKDVVAMARTGSGKTACFVLPILEK 383
F M L +L+GI G+++P+ IQ++ I L +DV+A A++G+GKTA F + +L+K
Sbjct: 21 FDDMNLKPELLRGIYAYGFERPSAIQQRAIMPILGERDVLAQAQSGTGKTATFSISVLQK 80
Query: 384 LLVPNNKPTPGKNLRALILSPTRELALQTLRFVRELGKFTGLTSAAILGGESIEQQFNVM 563
+ T K +ALIL+PTRELA Q + V LG + A +GG + +
Sbjct: 81 I------DTSLKQCQALILAPTRELAQQIQKVVVALGDLMNVECHACIGGTLVRDDMAAL 134
Query: 564 SGSSPDIVVATPGRFLHICIEMCLKLDNIKIVVFDEADRLFELGFGEQLQEICARLPSSR 743
+ +VV TPGR + L D +++ V DEAD + GF +Q+ +I LP +
Sbjct: 135 Q-AGVHVVVGTPGRVHDMIQRRALPTDAVQMFVLDEADEMLSRGFKDQIYDIFQLLPPTA 193
Query: 744 QTLLFSATLPK 776
Q +L SAT+P+
Sbjct: 194 QVVLLSATMPQ 204
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 116 bits (279), Expect = 4e-27
Identities = 72/212 (33%), Positives = 115/212 (54%), Gaps = 10/212 (4%)
Frame = +3
Query: 201 AFQSMGLSFPVLKGITKRGYKQPTPIQRKTIPIALTGKDVVAMARTGSGKTACFVLPILE 380
+FQS+ + + + +G+K+ TP+Q IP+ L KD+V A TGSGKT ++LP +
Sbjct: 2 SFQSINIDKWLKNAVAAQGFKKMTPVQANAIPLFLKNKDLVVEAVTGSGKTLAYLLPCFD 61
Query: 381 KLLVPNNKPTPGKNLRALILSPTRELALQTLRFVRELGKF--------TGLTSAAILGGE 536
K+ + T L ALI++PTRELA Q +EL + L + +GG+
Sbjct: 62 KV---TRRDTDETGLGALIVAPTRELATQIFNVTKELLAYQPDSLDGGKKLVADMYIGGK 118
Query: 537 -SIEQQFNVMSGSSPDIVVATPGRFLHICIEMCLKLDNIKIVVFDEADRLFELGFGEQLQ 713
++ +P +V+ TPGR + + K +++I++ DEAD L ++GF LQ
Sbjct: 119 GTLTNDLASFREKNPSVVIGTPGRLNEMLSHISSK--HLEILILDEADTLIDMGFQRTLQ 176
Query: 714 EICARLPSSRQTLLFSATLPKMLVXFAR-AGL 806
I ++LP R+T LFSAT+ + F + AGL
Sbjct: 177 SIISQLPKQRRTGLFSATMNDTVSSFLKIAGL 208
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 111 bits (267), Expect = 1e-25
Identities = 69/196 (35%), Positives = 106/196 (54%), Gaps = 4/196 (2%)
Frame = +3
Query: 195 SGAFQSMGLSFPVLKGITKRGYKQPTPIQRKTIPIALTGKDVVAMARTGSGKTACFVLPI 374
S F+ L +L+ IT G++ P+ +Q+ IP ++ G DV+ A++G GKTA FVL
Sbjct: 50 STGFRDFLLKPELLRAITDSGFEHPSEVQQVCIPQSILGTDVLCQAKSGMGKTAVFVLST 109
Query: 375 LEKLLVPNNKPTPGKNLRALILSPTRELALQTLRFVRELGKF-TGLTSAAILGGESIEQQ 551
L+++ +P G+ + L+L TRELA Q K+ + +A GG +I+Q
Sbjct: 110 LQQI-----EPVDGE-VSVLVLCHTRELAFQIKNEYARFSKYLPDVRTAVFYGGINIKQD 163
Query: 552 FNVM--SGSSPDIVVATPGRFLHICIEMCLKLDNIKIVVFDEADRLFE-LGFGEQLQEIC 722
SP IVVATPGR + E LK++++K V DE D+L E + +QE+
Sbjct: 164 MEAFKDKSKSPHIVVATPGRLNALVREKILKVNSVKHFVLDECDKLLESVDMRRDIQEVF 223
Query: 723 ARLPSSRQTLLFSATL 770
P +Q ++FSATL
Sbjct: 224 RATPPQKQVMMFSATL 239
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 109 bits (263), Expect = 3e-25
Identities = 77/196 (39%), Positives = 107/196 (54%), Gaps = 6/196 (3%)
Frame = +3
Query: 201 AFQSMGLSFPVLKGITKRGYKQPTPIQRKTIPIALTGKDVVAMARTGSGKTACFVLPILE 380
+F +G+S ++ + +PT IQ I L G++ + A+TGSGKTA F LPI+E
Sbjct: 8 SFSDLGISPWLIDTLKALAIYEPTDIQEGVIAQILEGRNCIGGAKTGSGKTAAFALPIIE 67
Query: 381 KLLVPNNKPTPGKNLRALILSPTRELALQTLRFVRELGKFTGLTSAAILGGESIEQQFNV 560
K +K G + ALIL+PTRELA+Q LG L A I+GG + +Q ++
Sbjct: 68 KW----SKDPSG--IFALILTPTRELAIQIDEQFAALGANLNLKHALIVGGMDMIRQ-SI 120
Query: 561 MSGSSPDIVVATPGRFLHIC----IEMCLKLDNIKIVVFDEADRLFELGFGEQLQEICAR 728
P +VVATPGR + E L IK +V DEADRL F + L + +
Sbjct: 121 DLSKRPHVVVATPGRLADLIRSNGEETIAGLRRIKFLVMDEADRLLSPTFADDLDDCFSV 180
Query: 729 LPSS--RQTLLFSATL 770
LP+S RQTLLF+AT+
Sbjct: 181 LPASEDRQTLLFTATV 196
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 109 bits (262), Expect = 5e-25
Identities = 72/200 (36%), Positives = 108/200 (54%), Gaps = 6/200 (3%)
Frame = +3
Query: 201 AFQSMGLSFPVLKGITKRGYKQPTPIQRKTIPIALTGKDVVAMARTGSGKTACFVLPILE 380
A+ LS +L ++K G+ +P PIQ IP A G D++ A TGSGKT F +PILE
Sbjct: 123 AWAHFSLSPEMLGSLSKAGFSKPMPIQSLVIPEASIGFDIIGKADTGSGKTLAFGIPILE 182
Query: 381 KLLVPNNKPTPGKNLRALILSPTRELALQTLRFVRELGKFTGLTSAAILGGESIEQQFNV 560
L + K ++AL+++PTRELA Q + + + +I GG ++++Q +
Sbjct: 183 HCL----RNVDAKYVQALVVAPTRELAHQICQHFELIKPSPNIRVMSITGGLAVQKQQRL 238
Query: 561 MSGSSPDIVVATPGRFLHICIEMCL--KLDNIKIVVFDEADRLFELGFGEQLQEICARL- 731
++ P +VVATPGR + E L IK +V DEADRL + E+L ++ L
Sbjct: 239 LN-KHPHVVVATPGRLWSVINENNLTGNFKKIKCLVLDEADRLLQKSHFEELSKLLEILG 297
Query: 732 ---PSSRQTLLFSATLPKML 782
+ RQT +FSAT + L
Sbjct: 298 NPMHTQRQTFIFSATFDEGL 317
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 99.1 bits (236), Expect = 6e-22
Identities = 64/201 (31%), Positives = 113/201 (56%), Gaps = 3/201 (1%)
Frame = +3
Query: 201 AFQSMGLSFPVLKGITKRGYKQPTPIQRKTIPIALTG--KDVVAMARTGSGKTACFVLPI 374
+F+ + L +LKGI +++P+ IQ K +P+ L+ ++++ +++G+GKTA F L +
Sbjct: 115 SFEELELKPELLKGIYSMKFQKPSKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTM 174
Query: 375 LEKLLVPNNKPTPGKNLRALILSPTRELALQTLRFVRELGKFTGLTSAAILGGESIEQQF 554
L + V + P P +A+ L+P+RELA Q + V E+GK+T + +A + +S+ +
Sbjct: 175 LSR--VDASVPKP----QAICLAPSRELARQIMDVVTEMGKYTEVKTAFGI-KDSVPKGA 227
Query: 555 NVMSGSSPDIVVATPGRFLHICIEMCLKLDNIKIVVFDEADRLF-ELGFGEQLQEICARL 731
+ IV+ TPG + + L +IK+ V DEAD + + G G+Q I L
Sbjct: 228 KI----DAQIVIGTPGTVMDLMKRRQLDARDIKVFVLDEADNMLDQQGLGDQSMRIKHLL 283
Query: 732 PSSRQTLLFSATLPKMLVXFA 794
P + Q +LFSAT + + +A
Sbjct: 284 PRNTQIVLFSATFSERVEKYA 304
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 98.3 bits (234), Expect = 1e-21
Identities = 59/188 (31%), Positives = 105/188 (55%), Gaps = 3/188 (1%)
Frame = +3
Query: 219 LSFPVLKGITKRGYKQPTPIQRKTIPIALTGKD-VVAMARTGSGKTACFVLPILEKLLVP 395
LS +++ G+++ TP+Q++ + ++ V A+TG+GKT F+L + +L
Sbjct: 45 LSSTFKNSLSRAGFEKMTPVQQRVLNEVFPNEENAVVQAKTGTGKTLAFLLVAFKDVLKG 104
Query: 396 NNKPTPGKNLRALILSPTRELALQTLRFVRELGKFTGLTSAAILGGESIEQQFNVMSGSS 575
+ K + ++ILSPTRELALQ R+L TG+ + +GG S ++ N + +
Sbjct: 105 KPRLNSSK-IHSVILSPTRELALQIFEEARKLTYGTGIRVSYAIGGNSKMREENAIRRGN 163
Query: 576 PDIVVATPGRFL-HICIEMCLKLDNIKIVVFDEADRLFELGFGEQLQEICARLPSSR-QT 749
++++ATPGR H+ L+ + + DEADRL ++GF E + I + +++ +
Sbjct: 164 ANLLIATPGRLEDHLQNPRILESLSTDSFILDEADRLMDMGFAESILNIHEAVTTTKTRK 223
Query: 750 LLFSATLP 773
L FSAT+P
Sbjct: 224 LCFSATMP 231
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 93.9 bits (223), Expect = 2e-20
Identities = 66/188 (35%), Positives = 95/188 (50%), Gaps = 1/188 (0%)
Frame = +3
Query: 237 KGITKRGYKQPTPIQRKTIPIALTGKDVVAMARTGSGKTACFVLPILEKLLVPNNKPTPG 416
+ + K+ + T IQR IP + +D++A A TGSGKT ++ PIL+KL + PG
Sbjct: 59 ENLKKQNITECTTIQRYAIPTIGSKRDLLACAPTGSGKTIAYLFPILQKLQL----HVPG 114
Query: 417 KNLRALILSPTRELALQTLRFVRELGKFTGLTSAAILGGESIEQQFNVMSGSSPDIVVAT 596
RA+I++PTREL Q R +L T L + Q+ D+ + T
Sbjct: 115 -GYRAIIVAPTRELCEQIYRQAEKLSFGTSLKIIELSKSNEKIQEKAPKLREKYDMCIGT 173
Query: 597 PGRFLHICIEMCLKLDNIKIVVFDEADRLFELGFGEQLQEICARLPSSR-QTLLFSATLP 773
P R + I+ L + ++ V DEADRLFE GF EQ I + SS LFSAT+P
Sbjct: 174 PMRLVQ-AIQTGLSFEKVEFFVMDEADRLFEPGFIEQTDHILSACTSSNICKSLFSATIP 232
Query: 774 KMLVXFAR 797
+ A+
Sbjct: 233 SRVEELAK 240
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 89.4 bits (212), Expect = 5e-19
Identities = 59/186 (31%), Positives = 92/186 (49%), Gaps = 7/186 (3%)
Frame = +3
Query: 249 KRGYKQPTPIQRKTIPIALT--GKDVVAMARTGSGKTACFVLPILEKLL-VPNNKPTPGK 419
K PT IQ +P L KD A+TGSGKT ++LPI+++L+ +P N T
Sbjct: 156 KMNISAPTAIQSCCLPALLNTDDKDAFIEAQTGSGKTLAYLLPIVQRLIRLPKNLHTRTS 215
Query: 420 NLRALILSPTRELALQTLRFVRELGKFT---GLTSAAILGGESIEQQFNVMSGSSPDIVV 590
+ A+I++PTREL Q +L + S ++GGE + + +I++
Sbjct: 216 GIYAVIMAPTRELCQQIYNVANKLNNNPLSHWIVSCNVIGGEKKKSE-KARIRKGVNILI 274
Query: 591 ATPGRFL-HICIEMCLKLDNIKIVVFDEADRLFELGFGEQLQEICARLPSSRQTLLFSAT 767
TPGR H+ L + ++ VV DE DRL ++GF E L +I + L S + +
Sbjct: 275 GTPGRLADHLENTEALDVSQVRWVVLDEGDRLMDMGFEETLTKILSYLESQSSIIKKDLS 334
Query: 768 LPKMLV 785
+P V
Sbjct: 335 IPSRKV 340
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 75.8 bits (178), Expect(2) = 4e-16
Identities = 53/187 (28%), Positives = 94/187 (50%), Gaps = 15/187 (8%)
Frame = +3
Query: 204 FQSMGLSFPVLKGITKRGYKQPTPIQRKTIPIALT----------GKDVVAMARTGSGKT 353
F S+ +S +++ + K+ + +Q +P+ L G DV A TGSGKT
Sbjct: 128 FSSLNISSKLVERLQKQNITRGFAVQAAVLPLLLQDGRHGPMYSYGGDVCVSAATGSGKT 187
Query: 354 ACFVLPILEKLLVPNNKPTPGKNLRALILSPTRELALQTLRFVRELGKFTGLTSAAILGG 533
+V+PI++ L +++ P LR +++ PTREL +Q + GL A G
Sbjct: 188 LSYVIPIVQCL---SHRTVP--RLRCVVIVPTRELTVQVAKTFEYYMSGAGLQVCAWTGQ 242
Query: 534 ESIEQQFNVMSGSSP----DIVVATPGRFL-HICIEMCLKLDNIKIVVFDEADRLFELGF 698
+S+ + ++G D++V+TPGR + HI + L +++ +V DEADRL + F
Sbjct: 243 KSLRHETYQLNGDENECRIDVLVSTPGRLVDHIRNDESFSLQHLRYMVIDEADRLLDQSF 302
Query: 699 GEQLQEI 719
+ + +
Sbjct: 303 QDWVDTV 309
Score = 24.2 bits (50), Expect(2) = 4e-16
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = +3
Query: 726 RLPSSRQTLLFSATLPK 776
RLPS Q L+FSATL +
Sbjct: 347 RLPSPLQKLVFSATLTR 363
>SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 606
Score = 33.1 bits (72), Expect = 0.048
Identities = 48/159 (30%), Positives = 72/159 (45%), Gaps = 5/159 (3%)
Frame = +3
Query: 309 GKDVVAMA-RTGSGKTACFVLPILEKLLVPNNKPTPGKNLRALILSPTRELALQTLRFVR 485
GK +A++ TGSGKTA F P K P +P + + LIL +ELALQ L+ R
Sbjct: 45 GKRRIAVSLATGSGKTALF--PHFIKY-APTLRPN---SEQCLILVHRKELALQALKHCR 98
Query: 486 ELGKFTGLTSAAILGGESIE-QQFNVMSGSSPDIVVATPGRFLHICIEMCLKLD--NIKI 656
E L +SIE N + D+ VA+ + E LK + N K+
Sbjct: 99 E-----------SLPNKSIEIDMGNQCASGLADVTVAS---VFSLKNERLLKYNPLNFKL 144
Query: 657 VVFDEADRLFELGFGEQLQEICARLPSSRQTLL-FSATL 770
++FDE + + L+ A S+ ++ +ATL
Sbjct: 145 LIFDEVHHMASPSYLRILEHFGAESEKSKVNVIGLTATL 183
>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2176
Score = 32.7 bits (71), Expect = 0.063
Identities = 41/158 (25%), Positives = 74/158 (46%), Gaps = 6/158 (3%)
Frame = +3
Query: 276 IQRKTIPIAL-TGKDVVAMARTGSGKTACFVLPILEKLL--VPNNKPTPGKNLRALILSP 446
IQ PIA T ++++ A TG+GKT +L IL +L + + +N + + ++P
Sbjct: 523 IQSHLYPIAFGTDENILLCAPTGAGKTNVAMLCILNELQKHLREDLSFNLQNFKIVYIAP 582
Query: 447 TRELALQTL-RFVRELGKFTGLTSAAILGGESIEQQFNVMSGSSPDIVVATPGRFLHICI 623
+ L + + F + L + A L G+S Q S I+V TP ++ I
Sbjct: 583 LKALVQEMVNNFSKRLTPYN--IRVAELTGDS---QLTKQQISETQIIVTTPEKWDIITR 637
Query: 624 EM--CLKLDNIKIVVFDEADRLFELGFGEQLQEICARL 731
+ ++ +++V+ DE L + G L+ I AR+
Sbjct: 638 KANDLSYVNLVRLVIIDEVHLLHD-ERGPVLESIVARI 674
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 31.5 bits (68), Expect = 0.15
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = +3
Query: 279 QRKTIPIALTGKDVVAMARTGSGKTACFVLP 371
Q + I L+GKDV + TG GK+ C+ LP
Sbjct: 524 QLEAINGTLSGKDVFILMPTGGGKSLCYQLP 554
>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
Slh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1935
Score = 30.7 bits (66), Expect = 0.26
Identities = 48/207 (23%), Positives = 89/207 (42%), Gaps = 20/207 (9%)
Frame = +3
Query: 222 SFPVLKGITKRGYKQPTPIQRKTIPIAL-TGKDVVAMARTGSGKTACFVLPILEKL---- 386
S +L T Y+ IQ PIA T ++++ A TG+GKT +L +L+ +
Sbjct: 263 SMDILCRKTFLSYQTLNRIQSLVYPIAYKTNENMLICAPTGAGKTDVALLAMLQTISNYV 322
Query: 387 ----LVPNNKP--TPGKNLRALILSPTRELALQTLRFVRELGKFTGLTSAAILGGESIEQ 548
L+ ++P + + + ++P + LA + + + + + GL + + G +
Sbjct: 323 ESMNLMDESEPLDVHRDDFKIVYIAPMKALAAEVVEKMGKRLAWLGLKTRELTG----DM 378
Query: 549 QFNVMSGSSPDIVVATPGRF---LHICIEMCLKLDNIKIVVFDEADRLF-ELG-FGEQLQ 713
Q + I+V TP ++ + + +++V+ DE L E G E L
Sbjct: 379 QLTKTEIAETQILVTTPEKWDVVTRKSVGDTQLAEKVRLVIIDEVHMLHDERGAVIESLV 438
Query: 714 EICARLPSSRQTLL----FSATLPKML 782
RL + Q ++ SATLP L
Sbjct: 439 ARTQRLVETSQQMIRIVGLSATLPNYL 465
>SPCC550.03c |||RNA helicase involved in mRNA
catabolism|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1213
Score = 29.5 bits (63), Expect = 0.59
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = +3
Query: 645 NIKIVVFDEADRLFELGFGEQLQEICARLPSSRQTLLFSATLP 773
+++ V+FDE + +L G +E+ LP +L SAT+P
Sbjct: 386 DVEFVIFDEVHYVNDLERGVVWEEVIIMLPPHVTLILLSATVP 428
>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1063
Score = 28.7 bits (61), Expect = 1.0
Identities = 21/72 (29%), Positives = 30/72 (41%)
Frame = +3
Query: 246 TKRGYKQPTPIQRKTIPIALTGKDVVAMARTGSGKTACFVLPILEKLLVPNNKPTPGKNL 425
T R ++ Q I G V+ T SGK+ + +PIL+ LL N
Sbjct: 305 TSRNIEKTYKHQADAINHLWNGFHVIVSTSTSSGKSLIYQIPILQSLLEDNQS------- 357
Query: 426 RALILSPTRELA 461
A + PT+ LA
Sbjct: 358 TAFFVFPTKSLA 369
>SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1030
Score = 27.9 bits (59), Expect = 1.8
Identities = 18/53 (33%), Positives = 26/53 (49%)
Frame = +3
Query: 639 LDNIKIVVFDEADRLFELGFGEQLQEICARLPSSRQTLLFSATLPKMLVXFAR 797
+ I V+FDE + + G +E LP + + + SATLP L FAR
Sbjct: 229 MHEIAWVIFDEVHYMRDKDRGVVWEETLILLPDAIRFIFLSATLPNAL-QFAR 280
>SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 599
Score = 27.5 bits (58), Expect = 2.4
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +3
Query: 456 LALQTLRFVRELGKFTGLTSAAILGGESIEQQFN 557
+A TL F+R +G G+T ++ E + Q F+
Sbjct: 485 MATATLMFIRTMGGSIGITVGEVIFNERVTQSFD 518
>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3699
Score = 26.2 bits (55), Expect = 5.5
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -2
Query: 568 PDITLNCCSMDSPPRIAALVNPVNFPSSLT 479
PD+ +CCS P + AL V+F S+ T
Sbjct: 1942 PDLFFSCCSHFIVPMVNALPKLVSFSSAST 1971
>SPBC29A3.01 |||heavy metal ATPase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 904
Score = 26.2 bits (55), Expect = 5.5
Identities = 17/71 (23%), Positives = 30/71 (42%)
Frame = +3
Query: 546 QQFNVMSGSSPDIVVATPGRFLHICIEMCLKLDNIKIVVFDEADRLFELGFGEQLQEICA 725
+ FN + G D+V+ R H + L L++ + + D+ D +L L C
Sbjct: 596 ESFNAVPGEGVDVVLRWKERTFHALLGNSLLLEHNNVSIPDDFDSKLKLSSSSGL--TCV 653
Query: 726 RLPSSRQTLLF 758
R+ Q + F
Sbjct: 654 RIAIDGQFVGF 664
>SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 262
Score = 26.2 bits (55), Expect = 5.5
Identities = 13/46 (28%), Positives = 22/46 (47%)
Frame = -2
Query: 589 TTMSGEEPDITLNCCSMDSPPRIAALVNPVNFPSSLTNLNVCNASS 452
T SG+ +T + S D + LVN ++P+ NL +S+
Sbjct: 31 TWQSGQVNTVTWSSVSTDPEEMVIMLVNNAHYPNQNFNLGTVQSSA 76
>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1374
Score = 25.8 bits (54), Expect = 7.3
Identities = 27/126 (21%), Positives = 56/126 (44%), Gaps = 6/126 (4%)
Frame = +3
Query: 312 KDVVAMARTGSGKTACFVLPILEKL---LVPNNKPTPGKNLRALILSPTRELALQTLRFV 482
++ + + RTG+GKT V I +KL ++ K + +++ L Q ++
Sbjct: 26 QNTLLVMRTGAGKTLLAVKLIKQKLEEQILIQESNLEHKKISVFLVNKV-PLVFQQAEYI 84
Query: 483 R-ELGKFTGLTSAAILGGESIEQQFNVMSG--SSPDIVVATPGRFLHICIEMCLKLDNIK 653
R +L G+ G SIE +++ +++V T F L ++++
Sbjct: 85 RSQLPAKVGM----FYGELSIEMSEQLLTNIILKYNVIVITADLFYLFLARGFLSINDLN 140
Query: 654 IVVFDE 671
+++FDE
Sbjct: 141 LIIFDE 146
>SPCC645.03c |isa1||iron-sulfur protein Isa1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 190
Score = 25.4 bits (53), Expect = 9.6
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -3
Query: 645 CLTLSTSQCRCVRSAQVLQQLCLEKSQT 562
CL+ +CR V Q L++L L++ QT
Sbjct: 4 CLSKPALRCRSVNRLQFLRKLSLQEIQT 31
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,821,143
Number of Sequences: 5004
Number of extensions: 53309
Number of successful extensions: 212
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 394431430
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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