Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_F_O11
(809 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_38262| Best HMM Match : No HMM Matches (HMM E-Value=.) 153 2e-37
SB_52320| Best HMM Match : DEAD (HMM E-Value=0) 146 2e-35
SB_17563| Best HMM Match : DEAD (HMM E-Value=0) 138 6e-33
SB_2247| Best HMM Match : DEAD (HMM E-Value=0) 138 6e-33
SB_9558| Best HMM Match : DEAD (HMM E-Value=0) 134 6e-32
SB_11691| Best HMM Match : No HMM Matches (HMM E-Value=.) 130 1e-30
SB_32980| Best HMM Match : DEAD (HMM E-Value=0) 127 9e-30
SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.) 124 6e-29
SB_19958| Best HMM Match : No HMM Matches (HMM E-Value=.) 124 9e-29
SB_37351| Best HMM Match : DEAD (HMM E-Value=0) 119 3e-27
SB_52411| Best HMM Match : No HMM Matches (HMM E-Value=.) 113 1e-25
SB_16431| Best HMM Match : No HMM Matches (HMM E-Value=.) 111 5e-25
SB_56998| Best HMM Match : No HMM Matches (HMM E-Value=.) 105 4e-23
SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.) 99 4e-21
SB_43842| Best HMM Match : RNB (HMM E-Value=0) 98 9e-21
SB_48046| Best HMM Match : DEAD (HMM E-Value=4e-38) 95 6e-20
SB_28853| Best HMM Match : No HMM Matches (HMM E-Value=.) 95 6e-20
SB_44408| Best HMM Match : DEAD (HMM E-Value=6.8005e-42) 92 6e-19
SB_45898| Best HMM Match : DEAD (HMM E-Value=1.3e-36) 85 9e-19
SB_18655| Best HMM Match : No HMM Matches (HMM E-Value=.) 91 1e-18
SB_51015| Best HMM Match : DEAD (HMM E-Value=0.0057) 89 4e-18
SB_34731| Best HMM Match : DEAD (HMM E-Value=3.8e-31) 86 3e-17
SB_57459| Best HMM Match : DEAD (HMM E-Value=1.50001e-40) 83 2e-16
SB_18993| Best HMM Match : DEAD (HMM E-Value=9.3e-41) 81 1e-15
SB_3952| Best HMM Match : No HMM Matches (HMM E-Value=.) 74 2e-13
SB_41683| Best HMM Match : DEAD (HMM E-Value=1.5e-27) 71 1e-12
SB_46680| Best HMM Match : Helicase_C (HMM E-Value=3.8e-22) 60 7e-12
SB_14524| Best HMM Match : DEAD (HMM E-Value=3.7e-17) 65 7e-11
SB_59075| Best HMM Match : Helicase_C (HMM E-Value=1.3e-19) 58 8e-09
SB_55073| Best HMM Match : Helicase_C (HMM E-Value=1.3e-19) 58 8e-09
SB_40196| Best HMM Match : DEAD (HMM E-Value=3.5e-07) 57 2e-08
SB_5994| Best HMM Match : zf-CCHC (HMM E-Value=2.2e-19) 56 3e-08
SB_37968| Best HMM Match : DEAD (HMM E-Value=3.6) 48 9e-06
SB_45527| Best HMM Match : DEAD (HMM E-Value=0.0069) 42 6e-04
SB_51441| Best HMM Match : DEAD (HMM E-Value=4.9e-19) 39 0.006
SB_6123| Best HMM Match : MutS_III (HMM E-Value=1.8e-09) 36 0.039
SB_17696| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.068
SB_43466| Best HMM Match : DEAD (HMM E-Value=1.8) 34 0.12
SB_5719| Best HMM Match : Helicase_C (HMM E-Value=1e-24) 34 0.16
SB_10917| Best HMM Match : SPRY (HMM E-Value=1.4e-17) 33 0.21
SB_3185| Best HMM Match : Sec63 (HMM E-Value=0) 33 0.27
SB_37956| Best HMM Match : Helicase_C (HMM E-Value=1.5e-27) 31 1.5
SB_28817| Best HMM Match : DEAD (HMM E-Value=3.4e-32) 30 1.9
SB_50579| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.6
SB_49640| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.6
SB_57323| Best HMM Match : ShTK (HMM E-Value=0) 29 4.5
SB_37711| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.9
SB_11764| Best HMM Match : DSHCT (HMM E-Value=1.9e-27) 29 5.9
SB_50928| Best HMM Match : 7tm_2 (HMM E-Value=4.7e-07) 28 7.8
>SB_38262| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1039
Score = 153 bits (371), Expect = 2e-37
Identities = 93/173 (53%), Positives = 114/173 (65%)
Frame = +3
Query: 285 KTIPIALTGKDVVAMARTGSGKTACFVLPILEKLLVPNNKPTPGKNLRALILSPTRELAL 464
KT+P+ + GKDVVAMARTGSGKTA F++P+ EKL K +RALILSPTRELAL
Sbjct: 310 KTLPLVMDGKDVVAMARTGSGKTAAFLIPMFEKLQTHTAKV----GIRALILSPTRELAL 365
Query: 465 QTLRFVRELGKFTGLTSAAILGGESIEQQFNVMSGSSPDIVVATPGRFLHICIEMCLKLD 644
QT +F++ELG+FTGL S+ ILGG+S VVATPGRFLH+ +EM LKL
Sbjct: 366 QTQKFIKELGRFTGLKSSVILGGDS---------------VVATPGRFLHVVMEMELKLS 410
Query: 645 NIKIVVFDEADRLFELGFGEQLQEICARLPSSRQTLLFSATLPKMLVXFARAG 803
+++ VVFDEAD RQTLLFSATLP++LV FA+AG
Sbjct: 411 SVEYVVFDEAD---------------------RQTLLFSATLPRLLVDFAKAG 442
>SB_52320| Best HMM Match : DEAD (HMM E-Value=0)
Length = 340
Score = 146 bits (354), Expect = 2e-35
Identities = 84/203 (41%), Positives = 122/203 (60%), Gaps = 2/203 (0%)
Frame = +3
Query: 204 FQSMGLSFPVLKGITKRGYKQPTPIQRKTIPIALTGKDVVAMARTGSGKTACFVLPILEK 383
F +S L G+ K G+ PT IQ++ IP+AL+G+DV+ A+TGSGKT F++PI+E
Sbjct: 52 FSDFPISKRTLDGLMKAGFVTPTDIQKQGIPVALSGRDVLGAAKTGSGKTLAFLIPIIET 111
Query: 384 LLVPNNKPTPGKNLRALILSPTRELALQTLRFVRELGKFTGLTSAAILGGESIE-QQFNV 560
L K T L AL++SPTRELA QT + ++G L++ I+GG+ ++ +Q +
Sbjct: 112 LW--RQKWTSMDGLGALVISPTRELAYQTFEVLVKIGNKHDLSAGLIIGGKDLKNEQKRI 169
Query: 561 MSGSSPDIVVATPGRFL-HICIEMCLKLDNIKIVVFDEADRLFELGFGEQLQEICARLPS 737
M +IVV TPGR L H+ +++I+V DEADR+ ++GF L I LPS
Sbjct: 170 M---KTNIVVCTPGRLLQHMDETPNFDCTSLQILVLDEADRILDMGFAPTLNAIIENLPS 226
Query: 738 SRQTLLFSATLPKMLVXFARAGL 806
RQTLL+SAT + + AR L
Sbjct: 227 ERQTLLYSATQTRSVKDLARLSL 249
>SB_17563| Best HMM Match : DEAD (HMM E-Value=0)
Length = 439
Score = 138 bits (333), Expect = 6e-33
Identities = 74/196 (37%), Positives = 116/196 (59%), Gaps = 6/196 (3%)
Frame = +3
Query: 204 FQSMGLSFPVLKGITKRGYKQPTPIQRKTIPIALTGKDVVAMARTGSGKTACFVLPILEK 383
F+ L +L GI ++G+ +P+PIQ ++IP+AL G+D++A A+ G+GKTA +++P+LE+
Sbjct: 49 FEDYCLKRELLMGIFEKGFDKPSPIQEESIPVALAGRDILARAKNGTGKTAAYLVPLLER 108
Query: 384 LLVPNNKPTPGKNLRALILSPTRELALQTLRFVRELGKFTGLTSAAILGGESIEQQF--- 554
T ++AL+L PTRELALQT + ELGK G GG S++
Sbjct: 109 ------TDTTKNCIQALVLVPTRELALQTSQICIELGKHMGAQVMVTTGGTSLKDDILRL 162
Query: 555 ---NVMSGSSPDIVVATPGRFLHICIEMCLKLDNIKIVVFDEADRLFELGFGEQLQEICA 725
++ ++VATPGR L + + + +++V DEAD+L + F + L++I
Sbjct: 163 YNKDIFVHVVVHVIVATPGRVLDLMKKKLADMSKCQMLVMDEADKLLSMDFKKMLEQIIK 222
Query: 726 RLPSSRQTLLFSATLP 773
LP +RQ LLFSAT P
Sbjct: 223 HLPENRQILLFSATFP 238
>SB_2247| Best HMM Match : DEAD (HMM E-Value=0)
Length = 439
Score = 138 bits (333), Expect = 6e-33
Identities = 74/196 (37%), Positives = 116/196 (59%), Gaps = 6/196 (3%)
Frame = +3
Query: 204 FQSMGLSFPVLKGITKRGYKQPTPIQRKTIPIALTGKDVVAMARTGSGKTACFVLPILEK 383
F+ L +L GI ++G+ +P+PIQ ++IP+AL G+D++A A+ G+GKTA +++P+LE+
Sbjct: 49 FEDYCLKRELLMGIFEKGFDKPSPIQEESIPVALAGRDILARAKNGTGKTAAYLVPLLER 108
Query: 384 LLVPNNKPTPGKNLRALILSPTRELALQTLRFVRELGKFTGLTSAAILGGESIEQQF--- 554
T ++AL+L PTRELALQT + ELGK G GG S++
Sbjct: 109 ------TDTTKNCIQALVLVPTRELALQTSQICIELGKHMGAQVMVTTGGTSLKDDILRL 162
Query: 555 ---NVMSGSSPDIVVATPGRFLHICIEMCLKLDNIKIVVFDEADRLFELGFGEQLQEICA 725
++ ++VATPGR L + + + +++V DEAD+L + F + L++I
Sbjct: 163 YNKDIFVHVVVHVIVATPGRVLDLMKKKLADMSKCQMLVMDEADKLLSMDFKKMLEQIIK 222
Query: 726 RLPSSRQTLLFSATLP 773
LP +RQ LLFSAT P
Sbjct: 223 HLPENRQILLFSATFP 238
>SB_9558| Best HMM Match : DEAD (HMM E-Value=0)
Length = 436
Score = 134 bits (325), Expect = 6e-32
Identities = 81/191 (42%), Positives = 112/191 (58%), Gaps = 1/191 (0%)
Frame = +3
Query: 201 AFQSMGLSFPVLKGITKRGYKQPTPIQRKTIPIALTGKDVVAMARTGSGKTACFVLPILE 380
+F +GL+ ++ G K+PT IQ +P L G+D + A+TGSGKTA F LPIL+
Sbjct: 8 SFAGLGLNKWLVSQCVAMGIKKPTEIQLNCVPPILQGRDCIGCAKTGSGKTAAFALPILQ 67
Query: 381 KLLVPNNKPTPGKNLRALILSPTRELALQTLRFVRELGKFTGLTSAAILGGESIEQQFNV 560
KL + P + A++L+PTRELA Q + LG+ GL A I+GG + +Q +
Sbjct: 68 KLC---DDP---YGIFAVVLTPTRELAFQIADQFKVLGRPIGLKEAVIVGGLDMMKQ-AL 120
Query: 561 MSGSSPDIVVATPGRFL-HICIEMCLKLDNIKIVVFDEADRLFELGFGEQLQEICARLPS 737
+ P +V+ATPGR HI L L I+ +V DEADRL + FG+ L+ I +P
Sbjct: 121 SLANKPHVVIATPGRLADHIKSTDTLNLKKIQFLVLDEADRLLDPSFGDDLKVIFDAVPE 180
Query: 738 SRQTLLFSATL 770
RQTLLFSATL
Sbjct: 181 KRQTLLFSATL 191
>SB_11691| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1448
Score = 130 bits (315), Expect = 1e-30
Identities = 77/200 (38%), Positives = 116/200 (58%), Gaps = 1/200 (0%)
Frame = +3
Query: 210 SMGLSFPVLKGITKRGYKQPTPIQRKTIPIALTGKDVVAMARTGSGKTACFVLPILEKLL 389
S +S L+GI G+ T IQ K+I L G+D++ A+TGSGKT F++P++E L
Sbjct: 576 SEDVSEKTLQGIKDMGFTTMTEIQHKSIAPLLKGRDLLGAAKTGSGKTLAFLVPVVELLY 635
Query: 390 VPNNKPTPGKNLRALILSPTRELALQTLRFVRELGKFTGLTSAAILGGESIEQQFNVMSG 569
K G + +I+SPTREL+LQT R+L K T I+GG + + + +
Sbjct: 636 KLQFKTRNGTGV--IIISPTRELSLQTYGVARDLLKHHNFTYGIIMGGVNRKAEAERLQ- 692
Query: 570 SSPDIVVATPGRFL-HICIEMCLKLDNIKIVVFDEADRLFELGFGEQLQEICARLPSSRQ 746
++++ATPGR L H+ N++ +V DEADR+ E+GF E++++I LPS RQ
Sbjct: 693 KGVNLLIATPGRLLDHLQNTQGFLYKNLQCLVIDEADRILEIGFEEEMRQIIRILPSKRQ 752
Query: 747 TLLFSATLPKMLVXFARAGL 806
T+LFSAT K + A+ L
Sbjct: 753 TVLFSATQTKNVEDLAKLSL 772
>SB_32980| Best HMM Match : DEAD (HMM E-Value=0)
Length = 985
Score = 127 bits (307), Expect = 9e-30
Identities = 67/194 (34%), Positives = 118/194 (60%), Gaps = 1/194 (0%)
Frame = +3
Query: 204 FQSMGLSFPVLKGITKRGYKQPTPIQRKTIPIALTGKDVVAMARTGSGKTACFVLPILEK 383
F S+ LS +L+G+ + G+++P+PIQ K IP+ G D++A A++G+GKT F + LE
Sbjct: 15 FHSLLLSPTLLRGLNEAGFEKPSPIQLKAIPLGRCGLDLIAQAKSGTGKTCVFSVIALEN 74
Query: 384 LLVPNNKPTPGKNLRALILSPTRELALQTLRFVRELG-KFTGLTSAAILGGESIEQQFNV 560
++ +N ++ +IL+PTRE+A+Q + +G + GL +GG S+E+
Sbjct: 75 VITESN------CIQIIILTPTREIAVQVKDVICAIGCHYDGLACKVFIGGISLEEDKKA 128
Query: 561 MSGSSPDIVVATPGRFLHICIEMCLKLDNIKIVVFDEADRLFELGFGEQLQEICARLPSS 740
+ S I V TPGR ++ + LK +++++ + DEAD+L + F +Q+ I + LP +
Sbjct: 129 L--KSCHIAVGTPGRVKYLIEQKYLKTESVRMFILDEADKLLDESFQQQINWIFSALPEN 186
Query: 741 RQTLLFSATLPKML 782
+Q + FSAT P++L
Sbjct: 187 KQMMAFSATYPEVL 200
>SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1170
Score = 124 bits (300), Expect = 6e-29
Identities = 69/205 (33%), Positives = 115/205 (56%), Gaps = 7/205 (3%)
Frame = +3
Query: 201 AFQSMGLSFPVLKGITKRGYKQPTPIQRKTIPIALTGKDVVAMARTGSGKTACFVLPILE 380
+F+ L L + K YK+PTP+Q+ +IPI + G+DV+A A+TGSGKTA F+LP++
Sbjct: 712 SFEEANLYEAFLNNVRKAQYKKPTPVQKYSIPIVIAGRDVMACAQTGSGKTAAFLLPVMT 771
Query: 381 KLL---VPNNKPTPGKNLRALILSPTRELALQTLRFVRELGKFTGLTSAAILGGESIEQQ 551
++ + ++ + + +A+ ++PTRELA Q R+ T L GG S+ Q
Sbjct: 772 SMMNAGLTSSSFSETQTPQAMCIAPTRELANQIYLEARKFAHGTMLRPVVCYGGVSVSHQ 831
Query: 552 FNVMSGSSPDIVVATPGRFLHICIEMCLKLDNIKIVVFDEADRLFELGFGEQLQEICARL 731
+ S +++V TPGR + + L ++ ++ DEADR+ ++GF ++ I +
Sbjct: 832 LRQLQ-SGCNLLVGTPGRLTDFIEKGKVSLKGLQFLILDEADRMLDMGFEPAIRRIVESM 890
Query: 732 ----PSSRQTLLFSATLPKMLVXFA 794
S RQTL+FSAT P+ + A
Sbjct: 891 GMPDKSERQTLMFSATFPEEIQRLA 915
>SB_19958| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 797
Score = 124 bits (299), Expect = 9e-29
Identities = 67/195 (34%), Positives = 108/195 (55%), Gaps = 4/195 (2%)
Frame = +3
Query: 201 AFQSMGLSFPVLKGITKRGYKQPTPIQRKTIPIALTGKDVVAMARTGSGKTACFVLPILE 380
+F + ++ I++ GY++PTP+Q+ +PI + G+D++A A+TGSGKTA ++LP+L
Sbjct: 480 SFNELPFGEQLMANISRAGYRRPTPVQKAALPIVMAGRDLMACAQTGSGKTAAYMLPVLT 539
Query: 381 KLLVPNNKPTPGKNLRALILSPTRELALQTLRFVRELGKFTGLTSAAILGGESIEQQFNV 560
L+ P ++ AL ++PTRELA Q R+ T + GG S+ Q +
Sbjct: 540 S-LIKQGLNAPPRSPLALCVAPTRELAKQIYIEARKFSDHTPIKVCVCYGGVSVPYQASQ 598
Query: 561 MSGSSPDIVVATPGRFLHICIEMCLKLDNIKIVVFDEADRLFELGFGEQLQEICAR---- 728
+ +V TPGR + L +I+ ++ DEADR+ +LGFG + ++
Sbjct: 599 LERGC-HFLVGTPGRLQDFVSREKIYLGSIQHLILDEADRMLDLGFGPDIHKLIEESNMT 657
Query: 729 LPSSRQTLLFSATLP 773
SRQTL+FSAT P
Sbjct: 658 AKESRQTLMFSATFP 672
>SB_37351| Best HMM Match : DEAD (HMM E-Value=0)
Length = 688
Score = 119 bits (286), Expect = 3e-27
Identities = 76/205 (37%), Positives = 103/205 (50%), Gaps = 5/205 (2%)
Frame = +3
Query: 198 GAFQSMGLSFPVLKGITKRGYKQPTPIQRKTIPIALTGKDVVAMARTGSGKTACFVLPIL 377
G F +S + + RG PIQ T G+DV+ ARTG+GKT F LP++
Sbjct: 73 GDFSKFRISQKTIDNLEDRGITYLFPIQASTFNYIYDGEDVIGQARTGTGKTLSFALPLV 132
Query: 378 EKLLVPNNKPTPGKNLRALILSPTRELALQTLRFVRELGKFTGLTSAAILGGESIEQQFN 557
EKL G+ + L+++PTRELA Q L + L I GG E Q N
Sbjct: 133 EKLQDGKLSQKRGRAPKVLVMAPTRELAKQVGNEFENLK--SNLEVYCIYGGMPYEPQEN 190
Query: 558 VMSGSSPDIVVATPGRFLHICIEMCLKLDNIKIVVFDEADRLFELGFGEQLQEICAR--- 728
++ S D++V TPGR L + L L +K VV DE DR+ ++GF E ++E+ A
Sbjct: 191 AIN-SGLDVLVGTPGRILDFMRQGTLDLSKLKHVVLDEVDRMLDMGFAESVEEVLAASYA 249
Query: 729 --LPSSRQTLLFSATLPKMLVXFAR 797
QTLLFSATLP V A+
Sbjct: 250 EDREDKPQTLLFSATLPPWAVNTAK 274
>SB_52411| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 370
Score = 113 bits (273), Expect = 1e-25
Identities = 64/173 (36%), Positives = 100/173 (57%)
Frame = +3
Query: 255 GYKQPTPIQRKTIPIALTGKDVVAMARTGSGKTACFVLPILEKLLVPNNKPTPGKNLRAL 434
G+++P+ IQ++ I L G+DV+A A++G+GKTA F + +L+ + +P +AL
Sbjct: 16 GFEKPSAIQQRAIKPILKGRDVIAQAQSGTGKTATFSISVLQAIDTQLREP------QAL 69
Query: 435 ILSPTRELALQTLRFVRELGKFTGLTSAAILGGESIEQQFNVMSGSSPDIVVATPGRFLH 614
+LSPTRELA Q + V LG + + A +GG +I + + IV TPGR
Sbjct: 70 VLSPTRELANQIQKVVLALGDYMSVQCHACIGGTNIGEDIRKLDYGQ-HIVSGTPGRVFD 128
Query: 615 ICIEMCLKLDNIKIVVFDEADRLFELGFGEQLQEICARLPSSRQTLLFSATLP 773
+ L+ +IK++V DEAD + GF EQ+ ++ LP + Q +L SATLP
Sbjct: 129 MIRRRNLRTRSIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLLSATLP 181
>SB_16431| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 790
Score = 111 bits (268), Expect = 5e-25
Identities = 62/166 (37%), Positives = 90/166 (54%)
Frame = +3
Query: 201 AFQSMGLSFPVLKGITKRGYKQPTPIQRKTIPIALTGKDVVAMARTGSGKTACFVLPILE 380
+F G ++ I K Y QPT IQ + +PIAL+G+D++ +A+TGSGKTA F+ P L
Sbjct: 518 SFAHFGFDEQMMASIRKLEYTQPTQIQCQALPIALSGRDIIGIAKTGSGKTAAFLWPALV 577
Query: 381 KLLVPNNKPTPGKNLRALILSPTRELALQTLRFVRELGKFTGLTSAAILGGESIEQQFNV 560
++ + G LI +PTREL Q R GK + A+ GG + +Q
Sbjct: 578 HIM-DQPELQVGDGPIVLICAPTRELCQQIYTEARRFGKAYNIHVVAVFGGGNKYEQSKA 636
Query: 561 MSGSSPDIVVATPGRFLHICIEMCLKLDNIKIVVFDEADRLFELGF 698
+ +IVVATPGR + L + +VFDEADR+F++GF
Sbjct: 637 LQ-EGAEIVVATPGRLIDHVKAKATNLHRVTYLVFDEADRMFDMGF 681
>SB_56998| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 478
Score = 105 bits (252), Expect = 4e-23
Identities = 70/214 (32%), Positives = 113/214 (52%), Gaps = 23/214 (10%)
Frame = +3
Query: 201 AFQSMGLSFPVLKGITKRGYKQPTPIQRKTIP----------------------IALTGK 314
+F M L +L+GI G+++P+ IQ++ I L+ +
Sbjct: 64 SFDDMNLKEALLRGIYAYGFEKPSAIQQRAIRPCCQEFSPSHVCYNQLNLTKNHYVLSAR 123
Query: 315 DVVAMARTGSGKTACFVLPILEKLLVPNNKPTPGKNL-RALILSPTRELALQTLRFVREL 491
DV+A A++G+GKTA F + IL+++ N K G + +AL+L+PTRELA Q + V L
Sbjct: 124 DVIAQAQSGTGKTATFAISILQEIDT-NYKDKNGCDCCQALVLAPTRELAQQIQKVVLAL 182
Query: 492 GKFTGLTSAAILGGESIEQQFNVMSGSSPDIVVATPGRFLHICIEMCLKLDNIKIVVFDE 671
G + + A +GG ++ + + +VV TPGR + L +IK+ V DE
Sbjct: 183 GDYMHVKCHACIGGTNVRED-RMKLEEGVHVVVGTPGRVFDMINRGVLNTRDIKLFVLDE 241
Query: 672 ADRLFELGFGEQLQEICARLPSSRQTLLFSATLP 773
AD + GF +Q+ ++ RLP+S Q +L SAT+P
Sbjct: 242 ADEMLSRGFKDQIYDVFTRLPTSVQVVLLSATMP 275
>SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1375
Score = 99.1 bits (236), Expect = 4e-21
Identities = 66/202 (32%), Positives = 105/202 (51%), Gaps = 4/202 (1%)
Frame = +3
Query: 204 FQSMGLSFPVLKGITKRGYKQPTPIQRKTIPIALTGKDVVAMARTGSGKTACFVLPILEK 383
F+ + L +L + GYK+PTP+Q+ IPI +D++A A+TGSGKTA F++PIL +
Sbjct: 877 FEDVDLGEILLHNVGLAGYKKPTPVQKYAIPIVKGKRDLMACAQTGSGKTAAFLIPILSR 936
Query: 384 LLVPNNKPTPGKNLRALILSPTRELALQTLRFVRELGKFTGLTSAAILGGESIEQQFNVM 563
+ + P + R+L + GG I Q +
Sbjct: 937 IYMEGPPAPPDFSYRSL------------------------CRPCVVYGGADIGSQLREL 972
Query: 564 SGSSPDIVVATPGRFLHICIEMCLKLDNIKIVVFDEADRLFELGFGEQLQEICAR--LPS 737
+ ++VATPGR + + + LD+I+ +V DEADR+ ++GF Q++ I + +P
Sbjct: 973 DRNC-HLLVATPGRLVDMMDRGRVGLDSIRFLVLDEADRMLDMGFEPQIRRIVDQDSMPK 1031
Query: 738 S--RQTLLFSATLPKMLVXFAR 797
+ RQTL+FSAT PK + AR
Sbjct: 1032 TGIRQTLMFSATFPKEIQMLAR 1053
>SB_43842| Best HMM Match : RNB (HMM E-Value=0)
Length = 1238
Score = 97.9 bits (233), Expect = 9e-21
Identities = 76/227 (33%), Positives = 111/227 (48%), Gaps = 25/227 (11%)
Frame = +3
Query: 201 AFQSMGLSFPVLKGITKRGYKQPTPIQRKTIPIALTGKDVVAMARTGSGKTACFVLPILE 380
+F + L + + K+ ++ PTPIQ +++ ++G+D++ +A TGSGKT + LP+
Sbjct: 73 SFHDLNLPPELSTYLAKKNFQVPTPIQMQSLSCVMSGRDIIGLAETGSGKTLAYSLPLC- 131
Query: 381 KLLVPNNKPTPGKNLRALILSPTRELALQTLRFVREL---------------------GK 497
LL PG ALIL+PTREL Q V E+ +
Sbjct: 132 MLLRTKAPSNPGDTPVALILTPTRELMQQVFMNVSEMLDVIRCPGNPGPSNQSVIYDTQQ 191
Query: 498 FTGLTSA-AILGGESIEQQFNVMSGSSPDIVVATPGRFLHICIEMCLKLDNIKIVVFDEA 674
FT A A+ GG + Q + D+VVATPGR L L I +V DE
Sbjct: 192 FTARYKAVAVCGGVPVSTQ-TIALREGADVVVATPGRL--------LDLYKITYLVMDEP 242
Query: 675 DRLFELGFGEQLQEI---CARLPSSRQTLLFSATLPKMLVXFARAGL 806
DR+ +G EQL++I +RQTLL+SATLP+ L AR+ +
Sbjct: 243 DRMLGMGMEEQLRKIVGLATGTSRARQTLLWSATLPESLERLARSAV 289
>SB_48046| Best HMM Match : DEAD (HMM E-Value=4e-38)
Length = 475
Score = 95.1 bits (226), Expect = 6e-20
Identities = 55/166 (33%), Positives = 89/166 (53%), Gaps = 1/166 (0%)
Frame = +3
Query: 195 SGAFQSMGLSFPVLKGITKRGYKQPTPIQRKTIPIALTGKDVVAMARTGSGKTACFVLPI 374
S F+ L +L+ I G++ P+ +Q + IP A+ G D++ A++G GKTA FVL
Sbjct: 46 SSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDIICQAKSGMGKTAVFVLAT 105
Query: 375 LEKLLVPNNKPTPGKNLRALILSPTRELALQTLRFVRELGKF-TGLTSAAILGGESIEQQ 551
L++L +P G+ + L++ TRELA Q + K+ + + A GG +I++
Sbjct: 106 LQQL-----EPVDGQ-VSVLVMCHTRELAFQIHKEYERFCKYMSNIKIAVFFGGINIKKD 159
Query: 552 FNVMSGSSPDIVVATPGRFLHICIEMCLKLDNIKIVVFDEADRLFE 689
+ + P IVV TPGR L + E L L + K + DE D++ E
Sbjct: 160 QQTLKTNCPHIVVGTPGRILALTREKTLNLKHAKHFILDECDKMLE 205
>SB_28853| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 208
Score = 95.1 bits (226), Expect = 6e-20
Identities = 55/166 (33%), Positives = 89/166 (53%), Gaps = 1/166 (0%)
Frame = +3
Query: 195 SGAFQSMGLSFPVLKGITKRGYKQPTPIQRKTIPIALTGKDVVAMARTGSGKTACFVLPI 374
S F+ L +L+ I G++ P+ +Q + IP A+ G D++ A++G GKTA FVL
Sbjct: 46 SSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDIICQAKSGMGKTAVFVLAT 105
Query: 375 LEKLLVPNNKPTPGKNLRALILSPTRELALQTLRFVRELGKF-TGLTSAAILGGESIEQQ 551
L++L +P G+ + L++ TRELA Q + K+ + + A GG +I++
Sbjct: 106 LQQL-----EPVDGQ-VSVLVMCHTRELAFQIHKEYERFCKYMSNIKIAVFFGGINIKKD 159
Query: 552 FNVMSGSSPDIVVATPGRFLHICIEMCLKLDNIKIVVFDEADRLFE 689
+ + P IVV TPGR L + E L L + K + DE D++ E
Sbjct: 160 QQTLKTNCPHIVVGTPGRILALTREKTLNLKHAKHFILDECDKMLE 205
>SB_44408| Best HMM Match : DEAD (HMM E-Value=6.8005e-42)
Length = 238
Score = 91.9 bits (218), Expect = 6e-19
Identities = 56/133 (42%), Positives = 76/133 (57%), Gaps = 1/133 (0%)
Frame = +3
Query: 312 KDVVAMARTGSGKTACFVLPILEKLLVPNNKPTPGKNLRALILSPTRELALQTLRFVREL 491
KDV+ +A TGSGKT F LPIL+ LL + P + L ALIL+PTRELA Q L
Sbjct: 2 KDVIGLAETGSGKTGAFALPILQALL---DNP---QRLFALILTPTRELAFQISEQCEAL 55
Query: 492 GKFTGLTSAAILGGESIEQQFNVMSGSSPDIVVATPGRFL-HICIEMCLKLDNIKIVVFD 668
G G+ A I+GG + Q +M P I++ATPGR + H+ L +K +V D
Sbjct: 56 GSGIGVKCAVIVGGIDMMSQ-ALMLAKKPHIIIATPGRLIDHLENTKGFSLRTLKYLVMD 114
Query: 669 EADRLFELGFGEQ 707
EADR+ + F ++
Sbjct: 115 EADRILNMDFEKE 127
>SB_45898| Best HMM Match : DEAD (HMM E-Value=1.3e-36)
Length = 428
Score = 85.0 bits (201), Expect(2) = 9e-19
Identities = 43/104 (41%), Positives = 66/104 (63%), Gaps = 3/104 (2%)
Frame = +3
Query: 231 VLKGITKRGYKQPTPIQRKTIPIALTGKDVVAMARTGSGKTACFVLPILEKLL-VP--NN 401
+L+ + K GYK PTPIQR+ IPI L +D++ +A TGSGKTA F +P+L ++ +P
Sbjct: 112 ILEIVDKLGYKDPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFAIPLLVWIMGLPKIER 171
Query: 402 KPTPGKNLRALILSPTRELALQTLRFVRELGKFTGLTSAAILGG 533
+ ALIL+PTRELA Q + + G+ G+ + +++GG
Sbjct: 172 DNDADQGPYALILAPTRELAQQIEEEILKFGRPLGIRTVSVIGG 215
Score = 26.6 bits (56), Expect(2) = 9e-19
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +3
Query: 654 IVVFDEADRLFELGFGEQLQEICARLPSS 740
+ V ADR+ ++GF ++Q+I LP S
Sbjct: 210 VSVIGGADRMIDMGFEPEVQKILEHLPVS 238
>SB_18655| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 697
Score = 90.6 bits (215), Expect = 1e-18
Identities = 55/148 (37%), Positives = 89/148 (60%), Gaps = 14/148 (9%)
Frame = +3
Query: 204 FQSMGLSFPVLKGITKRGYKQPTPIQRKTIPIALT-GKDVVAMARTGSGKTACFVLPILE 380
++ +G++ +L+ + +G+ +PTPIQ +IP AL +D++ A TGSGKT F +PI++
Sbjct: 132 WEGLGVAPDILRALGDQGFSKPTPIQSLSIPPALLYHRDIIGAAETGSGKTLAFGIPIIQ 191
Query: 381 KLLV---------PNNKPTP----GKNLRALILSPTRELALQTLRFVRELGKFTGLTSAA 521
+ P++K + G L ALI++PTRELALQ + + K+T + AA
Sbjct: 192 HIEAYKKRKAEQSPSDKESDLESQGYPLLALIMAPTRELALQVKDHLVKAAKYTSVKVAA 251
Query: 522 ILGGESIEQQFNVMSGSSPDIVVATPGR 605
I+GG + +Q ++ P+IVVATPGR
Sbjct: 252 IVGGMAAPKQQRLLK-QRPEIVVATPGR 278
>SB_51015| Best HMM Match : DEAD (HMM E-Value=0.0057)
Length = 96
Score = 89.0 bits (211), Expect = 4e-18
Identities = 42/77 (54%), Positives = 56/77 (72%)
Frame = +3
Query: 237 KGITKRGYKQPTPIQRKTIPIALTGKDVVAMARTGSGKTACFVLPILEKLLVPNNKPTPG 416
+ + + G+ PTPIQ TIP+AL GKDV A A TG+GKTA F+LPILE+LL +PT
Sbjct: 23 RAVNELGFLHPTPIQASTIPVALMGKDVCACAATGTGKTAAFMLPILERLLY---RPTQS 79
Query: 417 KNLRALILSPTRELALQ 467
+R L+++PTRELA+Q
Sbjct: 80 PAIRVLVITPTRELAIQ 96
>SB_34731| Best HMM Match : DEAD (HMM E-Value=3.8e-31)
Length = 978
Score = 86.2 bits (204), Expect = 3e-17
Identities = 59/183 (32%), Positives = 88/183 (48%), Gaps = 3/183 (1%)
Frame = +3
Query: 201 AFQSMGLSFPVLKGITKRGYKQPTPIQRKTIPIALTGKDVVAMARTGSGKTACFVLPILE 380
+F +GL VLK + QPT IQ TIP + V+ A+TGSGKT ++ P++
Sbjct: 379 SFAGLGLRDDVLKALDALNIHQPTVIQMVTIPKIIHRHHVICAAQTGSGKTLAYLAPLVH 438
Query: 381 KLLVPNNKP---TPGKNLRALILSPTRELALQTLRFVRELGKFTGLTSAAILGGESIEQQ 551
+L + K RA I+ P RELA Q L+ + L S ++GG +
Sbjct: 439 RLREDEERHGILARLKRPRACIVVPARELATQILKTAKSLCHHARFRSVGLIGGRKQKWM 498
Query: 552 FNVMSGSSPDIVVATPGRFLHICIEMCLKLDNIKIVVFDEADRLFELGFGEQLQEICARL 731
+ + S D++VATPG L + L ++ +V DEAD +F+ F EI +
Sbjct: 499 RDDLE-SPVDLLVATPGTLLKYRQKDRLFFSDLTHLVIDEADTMFDASFKSLTMEILHTI 557
Query: 732 PSS 740
SS
Sbjct: 558 NSS 560
>SB_57459| Best HMM Match : DEAD (HMM E-Value=1.50001e-40)
Length = 490
Score = 83.4 bits (197), Expect = 2e-16
Identities = 67/207 (32%), Positives = 103/207 (49%), Gaps = 6/207 (2%)
Frame = +3
Query: 192 SSGAFQSMGLSFPVLKGITKRGYKQPTPIQRKTIPIALTGKDV--VAMARTGSGKTACFV 365
S+ +F+ + LS + +G+ G+ +P+ IQ +P+ L V +A +++G+GKTA FV
Sbjct: 101 SAKSFEELPLSANLRRGVYDMGFNKPSKIQETALPMLLADPPVNMIAQSQSGTGKTAAFV 160
Query: 366 LPILEKLLVPNNKPTPGKNLRALILSPTRELALQTLRFVRELGKFTG--LTSAAILGGES 539
L +L + V KP P + + LSPT ELA QT + +GK + A+ G
Sbjct: 161 LTMLSR--VDATKPYP----QVICLSPTYELARQTGKVAEAMGKHCPHIKINYAVRG--- 211
Query: 540 IEQQFNVMSGSSPDIVVATPGRFLH-ICIEMCLKLDNIKIVVFDEADRLFEL-GFGEQLQ 713
QF + I++ TPG L I C + + + V DEAD + L G +Q
Sbjct: 212 --NQFPRGQKCTDHIIIGTPGTLLDWIRKSKCFEPRKVSVFVLDEADIMIALQGHQDQSI 269
Query: 714 EICARLPSSRQTLLFSATLPKMLVXFA 794
I L Q LLFSAT + ++ FA
Sbjct: 270 RIHKSLHKDCQVLLFSATYDEDVMKFA 296
>SB_18993| Best HMM Match : DEAD (HMM E-Value=9.3e-41)
Length = 690
Score = 80.6 bits (190), Expect = 1e-15
Identities = 54/154 (35%), Positives = 77/154 (50%), Gaps = 2/154 (1%)
Frame = +3
Query: 354 ACFVLPILEKLLVPNNKPT--PGKNLRALILSPTRELALQTLRFVRELGKFTGLTSAAIL 527
A F+LP + + N++P PG L+L PTRELA Q +GK L S I
Sbjct: 111 AQFILPGIVHI---NHQPLLQPGDGPIVLVLCPTRELAQQVQEVAYSVGKHCKLRSTCIY 167
Query: 528 GGESIEQQFNVMSGSSPDIVVATPGRFLHICIEMCLKLDNIKIVVFDEADRLFELGFGEQ 707
GG Q + +I +ATPGR + + L +V DEADR+ ++GF Q
Sbjct: 168 GGAPKGPQIRELE-RGVEICIATPGRLIDMLESRKTNLRRCTYLVLDEADRMLDMGFEPQ 226
Query: 708 LQEICARLPSSRQTLLFSATLPKMLVXFARAGLS 809
++ I ++ RQTL++SAT PK + A LS
Sbjct: 227 IRTIIDQIRPDRQTLMWSATWPKEVQGLAHDFLS 260
>SB_3952| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 592
Score = 73.7 bits (173), Expect = 2e-13
Identities = 46/141 (32%), Positives = 77/141 (54%), Gaps = 13/141 (9%)
Frame = +3
Query: 414 GKNLRALILSPTRELALQTLRFVRELGKFTGLTSAAILGGESIEQQFNVMSGSSPDIVVA 593
G+++ A++++PTRELA+Q R ++ K L + GG I +Q + + +I+V
Sbjct: 142 GRDMIAIVMTPTRELAIQIHRECKKFCKPNNLRCVCVYGGTGISEQIAELKRGA-EIIVC 200
Query: 594 TPGRFLHICIEMCLKLDNIK---IVVFDEADRLFELGFGEQLQEI----------CARLP 734
TPGR + + ++ N + +V DEADR+F++GF Q+ +I C R
Sbjct: 201 TPGRMIDMLTANNGRVTNCQRCTYLVLDEADRMFDMGFEPQITKIRYPKVMRIIDCIR-- 258
Query: 735 SSRQTLLFSATLPKMLVXFAR 797
RQT++FSAT P+ + AR
Sbjct: 259 PDRQTVMFSATFPRQMEALAR 279
Score = 47.6 bits (108), Expect = 1e-05
Identities = 20/62 (32%), Positives = 37/62 (59%)
Frame = +3
Query: 216 GLSFPVLKGITKRGYKQPTPIQRKTIPIALTGKDVVAMARTGSGKTACFVLPILEKLLVP 395
G+ +L + K Y++PTPIQ + IP+ ++G+D++A+ T + + A + +K P
Sbjct: 111 GVQLKILDVLKKNSYEKPTPIQAQAIPVIMSGRDMIAIVMTPTRELAIQIHRECKKFCKP 170
Query: 396 NN 401
NN
Sbjct: 171 NN 172
>SB_41683| Best HMM Match : DEAD (HMM E-Value=1.5e-27)
Length = 559
Score = 70.5 bits (165), Expect = 1e-12
Identities = 48/161 (29%), Positives = 78/161 (48%), Gaps = 2/161 (1%)
Frame = +3
Query: 204 FQSMGLSFPVLKGITKRGYKQPTPIQRKTIPIALTGKDVVAMARTGSGKTACFVLPILEK 383
F + G+ +++ + K G +P PIQ K +P + K ++ + TG+GK+ F+LP ++
Sbjct: 162 FSNFGVHPKLVEKLKKMGITKPVPIQEKALPSVFSHKSLLIKSETGTGKSLVFLLPSVQ- 220
Query: 384 LLVPNNKPTPGKNLRALILSPTRELALQTLRFVRELGKFTGLTSAAILGGESIEQQFNVM 563
PG+ +I+ PTRELA Q L V L + A+ + G + +Q ++
Sbjct: 221 --------DPGRGYGTIIVVPTRELASQMLYEVSRLLGDKSIV-ASFVSGVDLSRQEKLL 271
Query: 564 SGS--SPDIVVATPGRFLHICIEMCLKLDNIKIVVFDEADR 680
S P IV+ TP R I E K +V DE D+
Sbjct: 272 KDSLHPPRIVIGTPKRLWEIVQEHEHLFQRTKRIVIDEVDK 312
>SB_46680| Best HMM Match : Helicase_C (HMM E-Value=3.8e-22)
Length = 1058
Score = 59.7 bits (138), Expect(2) = 7e-12
Identities = 43/122 (35%), Positives = 61/122 (50%), Gaps = 7/122 (5%)
Frame = +3
Query: 426 RALILSPTRELALQTLRFVRELGKFTGLTSAAILGGESIEQQFNVMSGSSPDIVVATPGR 605
RA+++SPTRELA Q R L K + + F S DI+V TP R
Sbjct: 207 RAVVVSPTRELAQQIYREFCHLAKGCAFRIHVLTKANASTNTFGAKSSKRFDILVTTPNR 266
Query: 606 FLHICIE--MCLKLDNIKIVVFDEADRLFEL---GFGEQLQEI--CARLPSSRQTLLFSA 764
+H+ + ++L N++ ++ DEAD+LFE GF EQ+ I P + LFSA
Sbjct: 267 LVHLLTQEPPGIELHNVEWLILDEADKLFEEGKDGFREQIATIYQACNKPDIHRG-LFSA 325
Query: 765 TL 770
TL
Sbjct: 326 TL 327
Score = 28.7 bits (61), Expect(2) = 7e-12
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +3
Query: 231 VLKGITKRGYKQPTPIQRKTIPIALTG 311
++ + +RGY PTPIQ + P+ G
Sbjct: 174 IIHNVQERGYTTPTPIQMQATPLMAHG 200
>SB_14524| Best HMM Match : DEAD (HMM E-Value=3.7e-17)
Length = 500
Score = 64.9 bits (151), Expect = 7e-11
Identities = 30/71 (42%), Positives = 45/71 (63%)
Frame = +3
Query: 582 IVVATPGRFLHICIEMCLKLDNIKIVVFDEADRLFELGFGEQLQEICARLPSSRQTLLFS 761
++VATPGR + I + L ++ V DE D + +LGF +Q+Q+I RL + RQT+LFS
Sbjct: 258 VIVATPGRMVEIISRQAVDLTHVIGCVVDEVDTMLQLGFEQQVQQILERLSNRRQTMLFS 317
Query: 762 ATLPKMLVXFA 794
AT+P + A
Sbjct: 318 ATIPPSIEAMA 328
Score = 50.0 bits (114), Expect = 2e-06
Identities = 25/61 (40%), Positives = 37/61 (60%)
Frame = +3
Query: 237 KGITKRGYKQPTPIQRKTIPIALTGKDVVAMARTGSGKTACFVLPILEKLLVPNNKPTPG 416
K ++ GY PTPIQ + +P+ L+G+DV+ A TGSGK +LP ++ V TPG
Sbjct: 209 KNLSNHGYHSPTPIQMQVLPVLLSGRDVMVCASTGSGK----LLPSSPEMGVQVIVATPG 264
Query: 417 K 419
+
Sbjct: 265 R 265
>SB_59075| Best HMM Match : Helicase_C (HMM E-Value=1.3e-19)
Length = 445
Score = 58.0 bits (134), Expect = 8e-09
Identities = 28/62 (45%), Positives = 42/62 (67%), Gaps = 3/62 (4%)
Frame = +3
Query: 630 CLKLDNI---KIVVFDEADRLFELGFGEQLQEICARLPSSRQTLLFSATLPKMLVXFARA 800
CL + N+ + +V DEADR+ ++GF E ++ I + S RQTLLFSAT+PK + FA++
Sbjct: 8 CLLVGNVSPYRYLVLDEADRMIDMGFEEDVRTIFSYFKSQRQTLLFSATMPKKIQNFAKS 67
Query: 801 GL 806
L
Sbjct: 68 AL 69
>SB_55073| Best HMM Match : Helicase_C (HMM E-Value=1.3e-19)
Length = 212
Score = 58.0 bits (134), Expect = 8e-09
Identities = 28/62 (45%), Positives = 42/62 (67%), Gaps = 3/62 (4%)
Frame = +3
Query: 630 CLKLDNI---KIVVFDEADRLFELGFGEQLQEICARLPSSRQTLLFSATLPKMLVXFARA 800
CL + N+ + +V DEADR+ ++GF E ++ I + S RQTLLFSAT+PK + FA++
Sbjct: 8 CLLVGNVSPYRYLVLDEADRMIDMGFEEDVRTIFSYFKSQRQTLLFSATMPKKIQNFAKS 67
Query: 801 GL 806
L
Sbjct: 68 AL 69
>SB_40196| Best HMM Match : DEAD (HMM E-Value=3.5e-07)
Length = 456
Score = 56.8 bits (131), Expect = 2e-08
Identities = 47/162 (29%), Positives = 70/162 (43%), Gaps = 3/162 (1%)
Frame = +3
Query: 255 GYKQPTPIQRKTIPIALTGKDVVAMARTGSGKTACFVLPILEKLL---VPNNKPTPGKNL 425
G PT +Q+ P L G+DV +A GSGK ++LPI+ ++ V P L
Sbjct: 206 GVTVPTSLQKHMWPSLLRGRDVAGVAIEGSGKRLAYLLPIIHQITESSVYQELPLANGPL 265
Query: 426 RALILSPTRELALQTLRFVRELGKFTGLTSAAILGGESIEQQFNVMSGSSPDIVVATPGR 605
LIL + + +L + T ++ G E+ V + +++VATP
Sbjct: 266 -VLILCTNWQNTARVYGVCEDLIRNRRRTRVQMIFGGGAEEDRIVPLINGCEVLVATPPC 324
Query: 606 FLHICIEMCLKLDNIKIVVFDEADRLFELGFGEQLQEICARL 731
FL + LD + VVFD+AD L E E C L
Sbjct: 325 FLRMLKRCYTSLDRLCHVVFDDADMLAEYFTAEIKDHKCMTL 366
>SB_5994| Best HMM Match : zf-CCHC (HMM E-Value=2.2e-19)
Length = 185
Score = 56.0 bits (129), Expect = 3e-08
Identities = 24/51 (47%), Positives = 35/51 (68%)
Frame = +3
Query: 201 AFQSMGLSFPVLKGITKRGYKQPTPIQRKTIPIALTGKDVVAMARTGSGKT 353
+F+ L L + K YK+PTP+Q+ +IPI + G+DV+A A+TGSGKT
Sbjct: 135 SFEEANLYEAFLNNVRKAQYKKPTPVQKYSIPIVIAGRDVMACAQTGSGKT 185
>SB_37968| Best HMM Match : DEAD (HMM E-Value=3.6)
Length = 127
Score = 48.0 bits (109), Expect = 9e-06
Identities = 19/40 (47%), Positives = 30/40 (75%)
Frame = +3
Query: 648 IKIVVFDEADRLFELGFGEQLQEICARLPSSRQTLLFSAT 767
++I+V DEADR+ ++GF ++ + +LP+ RQ LLFSAT
Sbjct: 4 VEILVLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFSAT 43
>SB_45527| Best HMM Match : DEAD (HMM E-Value=0.0069)
Length = 120
Score = 41.9 bits (94), Expect = 6e-04
Identities = 24/60 (40%), Positives = 33/60 (55%)
Frame = +3
Query: 426 RALILSPTRELALQTLRFVRELGKFTGLTSAAILGGESIEQQFNVMSGSSPDIVVATPGR 605
+AL+LSPTRELA Q + V LG + + A +GG +I + + IV TPGR
Sbjct: 5 QALVLSPTRELANQIQKVVLALGDYMSVQCHACIGGTNIGEDIRKLD-YGQHIVSGTPGR 63
>SB_51441| Best HMM Match : DEAD (HMM E-Value=4.9e-19)
Length = 304
Score = 38.7 bits (86), Expect = 0.006
Identities = 17/41 (41%), Positives = 24/41 (58%)
Frame = +3
Query: 255 GYKQPTPIQRKTIPIALTGKDVVAMARTGSGKTACFVLPIL 377
GY P+QR+ I L KD + + TG+GKT C+ +P L
Sbjct: 136 GYIDFRPMQRQAIDTLLAEKDSLILLPTGAGKTICYAIPAL 176
>SB_6123| Best HMM Match : MutS_III (HMM E-Value=1.8e-09)
Length = 730
Score = 35.9 bits (79), Expect = 0.039
Identities = 30/124 (24%), Positives = 54/124 (43%), Gaps = 6/124 (4%)
Frame = -2
Query: 658 TILMLSNFKHIS--MQMCKKR-PGVATTMSGE-EPDITLNCCSMDSPPRIAALVNPVNFP 491
++ M N +H++ ++ C KR P + T+ E E D L S D +I+ + N
Sbjct: 266 SVEMFYNDRHLNEEVRQCLKRCPDIERTLQKEGELDRLLQRSSRDRSRKISRRCSRRNIV 325
Query: 490 SSLTNLNVCNASSLVGERINALKFFPGVGLLFGTRSFSRIGRTKQAVF--PDPVRAIATT 317
++ V SSL+ + +N F P + ++ + + K VF P P +
Sbjct: 326 CAMAANEVLTLSSLIKKDLNEAYFLPAWPSTYSSKDYRFLNDKKYRVFDYPPPSQTFLEY 385
Query: 316 SFPV 305
FP+
Sbjct: 386 QFPM 389
>SB_17696| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 119
Score = 35.1 bits (77), Expect = 0.068
Identities = 15/46 (32%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Frame = +3
Query: 204 FQSMGLSFPVLKGITKRGYKQPTPIQRKTIPIALT-GKDVVAMART 338
++ +G++ +L+ + +G+ +PTPIQ +IP AL +D++ A T
Sbjct: 74 WEGLGVAPDILRALGDQGFSKPTPIQSLSIPPALLYHRDIIGAAET 119
>SB_43466| Best HMM Match : DEAD (HMM E-Value=1.8)
Length = 210
Score = 34.3 bits (75), Expect = 0.12
Identities = 17/39 (43%), Positives = 25/39 (64%), Gaps = 2/39 (5%)
Frame = +3
Query: 636 KLD--NIKIVVFDEADRLFELGFGEQLQEICARLPSSRQ 746
KLD +IK++V DEAD + GF EQ+ ++ LP + Q
Sbjct: 30 KLDTRSIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQ 68
>SB_5719| Best HMM Match : Helicase_C (HMM E-Value=1e-24)
Length = 1366
Score = 33.9 bits (74), Expect = 0.16
Identities = 28/115 (24%), Positives = 45/115 (39%)
Frame = +3
Query: 27 CFACXXXXXXXRQHG*IKLIKMLKPKELDDHLPGFDAPKADXXXXXXXXXXXXXXSSGAF 206
CF C + K K L P E D++L F AP+ D ++G
Sbjct: 447 CFKCGQEGHWAKNCRGSKAQKEL-PDENDENLKEF-APEDDEFLKNLSLDTVAQMAAGIP 504
Query: 207 QSMGLSFPVLKGITKRGYKQPTPIQRKTIPIALTGKDVVAMARTGSGKTACFVLP 371
V K + + G+ Q + + L+G + + TG+GK+ C+ LP
Sbjct: 505 VETETPPEVYKALGQLGFSSFRAGQEQAVMRILSGMSSLVVLSTGAGKSLCYQLP 559
>SB_10917| Best HMM Match : SPRY (HMM E-Value=1.4e-17)
Length = 635
Score = 33.5 bits (73), Expect = 0.21
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = +3
Query: 579 DIVVATPGRFLHICIEMCLKLDNIKIVVFDEADRLFELGFGEQLQEICARLP 734
DIV TPG+ + L +K + DEAD L G + + +I ++P
Sbjct: 137 DIVTGTPGKLNDFITTDKISLHQVKFFILDEADGLLAQGNNDLIMKIYNKIP 188
>SB_3185| Best HMM Match : Sec63 (HMM E-Value=0)
Length = 2590
Score = 33.1 bits (72), Expect = 0.27
Identities = 40/175 (22%), Positives = 81/175 (46%), Gaps = 6/175 (3%)
Frame = +3
Query: 222 SFPVLKGITKRGYKQPTPIQRKTIPIALTG-KDVVAMARTGSGKTACFVLPILEKL--LV 392
S P+ GY IQ + AL ++++ A TG+GKT +L IL ++ +
Sbjct: 1098 SLPMYAQAAFEGYPTLNRIQSRLCETALNSDENLLLCAPTGAGKTNVALLTILREIGKHI 1157
Query: 393 PNNKPTPGKNLRALILSPTRELALQ-TLRFVRELGKFTGLTSAAILGGESIEQQFNVMSG 569
+ + + + ++P R L + L F + L + GLT + + G ++ ++ + G
Sbjct: 1158 NLDGTINTEEFKIIYVAPMRSLVQEMVLNFSKRLSTY-GLTVSELTGDHNLTKE--QIHG 1214
Query: 570 SSPDIVVATPGRFLHICIEMCLK--LDNIKIVVFDEADRLFELGFGEQLQEICAR 728
+ I+V TP ++ I + + +++++ DE L + G L+ + AR
Sbjct: 1215 T--QIIVCTPEKWDIITRKSGERTFTQLVRLIIIDEIHLLHD-DRGPVLESLVAR 1266
>SB_37956| Best HMM Match : Helicase_C (HMM E-Value=1.5e-27)
Length = 331
Score = 30.7 bits (66), Expect = 1.5
Identities = 16/39 (41%), Positives = 20/39 (51%)
Frame = +3
Query: 690 LGFGEQLQEICARLPSSRQTLLFSATLPKMLVXFARAGL 806
+GF + I LP R+T LFSAT + RAGL
Sbjct: 1 MGFEASINTILGYLPKQRRTGLFSATQTDEVEALVRAGL 39
>SB_28817| Best HMM Match : DEAD (HMM E-Value=3.4e-32)
Length = 651
Score = 30.3 bits (65), Expect = 1.9
Identities = 28/102 (27%), Positives = 44/102 (43%)
Frame = +3
Query: 276 IQRKTIPIALTGKDVVAMARTGSGKTACFVLPILEKLLVPNNKPTPGKNLRALILSPTRE 455
+Q + I ++G D + + TG GK+ CF LP + K L L++SP
Sbjct: 93 LQLECINATMSGVDCILIMPTGGGKSLCFQLPAV-----------VSKGL-TLVVSPLVS 140
Query: 456 LALQTLRFVRELGKFTGLTSAAILGGESIEQQFNVMSGSSPD 581
L L ++ LG AA+L S ++ N + S D
Sbjct: 141 LMEDQLWALKRLG-----IKAALLNASSTREEVNSVHASIVD 177
>SB_50579| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 488
Score = 29.9 bits (64), Expect = 2.6
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Frame = -1
Query: 605 APRCC--NNYVWRRARHHIKLLLNGLSTKNS 519
+P CC +Y W++ HH L+ N +S NS
Sbjct: 358 SPLCCPGGSYEWQQDGHHFLLMYNSMSWTNS 388
>SB_49640| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1177
Score = 29.9 bits (64), Expect = 2.6
Identities = 27/110 (24%), Positives = 52/110 (47%), Gaps = 2/110 (1%)
Frame = +3
Query: 291 IPIALTGKDVVAMARTGSGKTACFVLPILEKLLVPNNKPTPGKNLRALILSPTRELALQT 470
+ + T + +V A TGSGKT F L I+ +L++ + + + + + ++P + AL +
Sbjct: 344 LQVFYTDRPLVVCAPTGSGKTVIFELAII-RLIMKSAEDI--RRTKIIYMAPMK--ALCS 398
Query: 471 LRFVRELGKF--TGLTSAAILGGESIEQQFNVMSGSSPDIVVATPGRFLH 614
R KF G+ + G ++ F + +IV+ TP L+
Sbjct: 399 ERCTDWAAKFGPLGIKCKEVTGDSELDDYFEI---RDVNIVMTTPVHLLN 445
>SB_57323| Best HMM Match : ShTK (HMM E-Value=0)
Length = 911
Score = 29.1 bits (62), Expect = 4.5
Identities = 10/32 (31%), Positives = 20/32 (62%)
Frame = -1
Query: 386 KFLKDREDKTSCFSGPSSGHCNNIFPGQCYWY 291
K++++ KT + G SG+C +++P +C Y
Sbjct: 831 KYMEEVCRKTCGYCGGGSGNCKDVYPSECPKY 862
>SB_37711| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 960
Score = 28.7 bits (61), Expect = 5.9
Identities = 17/52 (32%), Positives = 25/52 (48%)
Frame = +3
Query: 375 LEKLLVPNNKPTPGKNLRALILSPTRELALQTLRFVRELGKFTGLTSAAILG 530
L + PNN P PGK I+S +A+ T R++ F G + I+G
Sbjct: 134 LSRAHAPNNNPVPGKRRTRQIIS---MVAMDTERWLFPRAAFRGAINNQIMG 182
>SB_11764| Best HMM Match : DSHCT (HMM E-Value=1.9e-27)
Length = 1492
Score = 28.7 bits (61), Expect = 5.9
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = +3
Query: 645 NIKIVVFDEADRLFELGFGEQLQEICARLPSSRQTLLFSATLPKML 782
+++ V+FDE + + G +E+ LP +L SAT+P L
Sbjct: 257 DVEWVIFDEVHYINDAERGVVWEEVLIMLPDHVSIILLSATVPNTL 302
>SB_50928| Best HMM Match : 7tm_2 (HMM E-Value=4.7e-07)
Length = 1127
Score = 28.3 bits (60), Expect = 7.8
Identities = 12/30 (40%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Frame = +3
Query: 357 CFVLPILEKLLVPN-NKPTPGKNLRALILS 443
C L ++ +++P+ KP PGKNL +L +S
Sbjct: 105 CLFLVLIAHVILPDLRKPLPGKNLMSLSMS 134
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,361,538
Number of Sequences: 59808
Number of extensions: 418352
Number of successful extensions: 1005
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 895
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 954
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2251677692
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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