Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_O11
         (809 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY957503-1|AAY41942.1|  596|Anopheles gambiae vasa-like protein ...   136   6e-34
AB090822-1|BAC57919.1|  468|Anopheles gambiae gag-like protein p...    25   2.8  
AB090823-2|BAC57922.1| 1154|Anopheles gambiae reverse transcript...    23   8.4  

>AY957503-1|AAY41942.1|  596|Anopheles gambiae vasa-like protein
           protein.
          Length = 596

 Score =  136 bits (330), Expect = 6e-34
 Identities = 77/196 (39%), Positives = 115/196 (58%), Gaps = 5/196 (2%)
 Frame = +3

Query: 201 AFQSMGLSFPVLKGITKRGYKQPTPIQRKTIPIALTGKDVVAMARTGSGKTACFVLPILE 380
           +F+  GL   V+  + K  Y +PTPIQR  IPI L G+D++A A+TGSGKTA F+LP++ 
Sbjct: 175 SFERSGLREEVMTNVRKSSYTKPTPIQRYAIPIILNGRDLMACAQTGSGKTAAFMLPMIH 234

Query: 381 KLL-VPNNKPTPGKNLRALILSPTRELALQTLRFVRELGKFTGLTSAAILGGESIEQQFN 557
            LL   ++     +N   +I++PTRELA+Q     R+    T L      GG +++ Q  
Sbjct: 235 HLLDKEDSLELRTRNPYIVIVAPTRELAIQIHDEGRKFAHGTKLKVCVSYGGTAVQHQLQ 294

Query: 558 VMSGSSPDIVVATPGRFLHICIEMCLKLDNIKIVVFDEADRLFELGFGEQLQEIC--ARL 731
           +M G    ++VATPGR L       +  +N+  VV DEADR+ ++GF   ++++   A +
Sbjct: 295 LMRGGC-HVLVATPGRLLDFIDRGYVTFENVNFVVLDEADRMLDMGFLPSIEKVMGHATM 353

Query: 732 P--SSRQTLLFSATLP 773
           P    RQTL+FSAT P
Sbjct: 354 PEKQQRQTLMFSATFP 369


>AB090822-1|BAC57919.1|  468|Anopheles gambiae gag-like protein
           protein.
          Length = 468

 Score = 25.0 bits (52), Expect = 2.8
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +2

Query: 707 ITRDLCSSPF*SSNVIILCNTT*NASXICK 796
           ++RD C SP   SNV I C T+ + +  C+
Sbjct: 415 VSRD-CHSPVNHSNVCIRCGTSGHLAATCE 443


>AB090823-2|BAC57922.1| 1154|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1154

 Score = 23.4 bits (48), Expect = 8.4
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = -3

Query: 363 QNKLFFRTQFGPLQQHLS 310
           + KL + T  GP+++H+S
Sbjct: 620 ERKLIYNTSAGPVERHIS 637


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 716,672
Number of Sequences: 2352
Number of extensions: 12979
Number of successful extensions: 21
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 85655418
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)