Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_F_O11
(809 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative simila... 225 3e-59
At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)... 171 5e-43
At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila... 147 9e-36
At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)... 144 8e-35
At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)... 144 8e-35
At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila... 142 3e-34
At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila... 142 3e-34
At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9) s... 141 4e-34
At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative 140 8e-34
At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)... 140 1e-33
At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar... 139 2e-33
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai... 138 5e-33
At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila... 138 5e-33
At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative simila... 137 9e-33
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 136 1e-32
At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative 134 5e-32
At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA... 133 1e-31
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 132 2e-31
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 132 3e-31
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 132 3e-31
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 132 3e-31
At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative 130 1e-30
At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative simila... 130 1e-30
At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica... 128 3e-30
At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helica... 128 3e-30
At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18) 128 4e-30
At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein c... 128 4e-30
At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative simila... 126 1e-29
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 126 2e-29
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar... 126 2e-29
At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative non-co... 126 2e-29
At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong ... 125 3e-29
At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar... 125 3e-29
At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contai... 125 3e-29
At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical ... 124 7e-29
At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong sim... 124 7e-29
At3g13920.1 68416.m01758 eukaryotic translation initiation facto... 124 7e-29
At1g72730.1 68414.m08410 eukaryotic translation initiation facto... 124 9e-29
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 123 2e-28
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 123 2e-28
At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ... 122 3e-28
At3g19760.1 68416.m02501 eukaryotic translation initiation facto... 121 5e-28
At1g54270.1 68414.m06187 eukaryotic translation initiation facto... 120 1e-27
At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ... 119 2e-27
At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ... 119 2e-27
At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative 118 5e-27
At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)... 118 5e-27
At1g51380.1 68414.m05780 eukaryotic translation initiation facto... 118 5e-27
At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly id... 113 2e-25
At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)... 110 1e-24
At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar... 110 1e-24
At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein c... 108 5e-24
At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)... 108 5e-24
At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar... 104 6e-23
At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)... 103 1e-22
At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative simila... 103 1e-22
At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA he... 101 7e-22
At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /... 100 1e-21
At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA he... 97 1e-20
At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contai... 96 2e-20
At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)... 95 5e-20
At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative EUKARY... 86 2e-17
At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)... 71 9e-13
At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative simila... 60 2e-09
At5g08110.1 68418.m00946 DEAD/DEAH box helicase, putative severa... 44 2e-04
At2g42270.1 68415.m05232 U5 small nuclear ribonucleoprotein heli... 40 0.001
At1g20960.1 68414.m02624 U5 small nuclear ribonucleoprotein heli... 39 0.003
At5g20320.1 68418.m02418 DEAD/DEAH box helicase, putative simila... 34 0.097
At5g27680.1 68418.m03319 DEAD/DEAH box helicase, putative simila... 34 0.13
At3g27730.1 68416.m03462 ATP-dependent DNA helicase, putative si... 34 0.13
At1g31360.1 68414.m03838 DNA helicase, putative (RECQl2) nearly ... 33 0.30
At1g27880.1 68414.m03416 ATP-dependent DNA helicase, putative si... 32 0.39
At1g33270.2 68414.m04115 patatin-related contains Patatin domain... 32 0.52
At1g33270.1 68414.m04114 patatin-related contains Patatin domain... 32 0.52
At1g10930.1 68414.m01255 DNA helicase (RECQl4A) nearly identical... 31 0.68
At4g35740.1 68417.m05072 DNA helicase (RECQl3) identical to DNA ... 31 0.90
At1g01040.1 68414.m00004 DEAD/DEAH box helicase carpel factory /... 31 1.2
At5g61140.1 68418.m07670 DEAD box RNA helicase, putative similar... 30 1.6
At3g62090.1 68416.m06976 basic helix-loop-helix (bHLH) protein, ... 30 2.1
At3g05740.1 68416.m00644 DNA helicase (RECQI1) identical to DNA ... 30 2.1
At5g56100.1 68418.m06999 glycine-rich protein / oleosin contains... 29 3.7
At1g08100.1 68414.m00886 high-affinity nitrate transporter (ACH2... 28 6.4
At1g08090.1 68414.m00885 high-affinity nitrate transporter (ACH1... 28 6.4
At3g22160.1 68416.m02797 VQ motif-containing protein contains PF... 28 8.4
At2g19920.1 68415.m06036 RNA-dependent RNA polymerase family pro... 28 8.4
>At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative similar
to RNA helicase GI:3776027 from [Arabidopsis thaliana]
Length = 513
Score = 225 bits (550), Expect = 3e-59
Identities = 114/205 (55%), Positives = 149/205 (72%), Gaps = 1/205 (0%)
Frame = +3
Query: 195 SGAFQSMGLSFPVLKGITKRGYKQPTPIQRKTIPIALTGKDVVAMARTGSGKTACFVLPI 374
SG F+S+ L V I K+GYK PTPIQRKT+P+ L+G DVVAMARTGSGKTA F++P+
Sbjct: 27 SGGFESLNLGPNVFNAIKKKGYKVPTPIQRKTMPLILSGVDVVAMARTGSGKTAAFLIPM 86
Query: 375 LEKLLVPNNKPTPGKNLRALILSPTRELALQTLRFVRELGKFTGLTSAAILGGESIEQQF 554
LEKL + P +RALILSPTR+LA QTL+F +ELGKFT L + ++GG+S+E QF
Sbjct: 87 LEKL----KQHVPQGGVRALILSPTRDLAEQTLKFTKELGKFTDLRVSLLVGGDSMEDQF 142
Query: 555 NVMSGSSPDIVVATPGRFLHICIEM-CLKLDNIKIVVFDEADRLFELGFGEQLQEICARL 731
++ PD+++ATPGR +H+ E+ + L ++ VVFDEAD LF +GF EQL +I +L
Sbjct: 143 EELT-KGPDVIIATPGRLMHLLSEVDDMTLRTVEYVVFDEADSLFGMGFAEQLHQILTQL 201
Query: 732 PSSRQTLLFSATLPKMLVXFARAGL 806
+RQTLLFSATLP L FA+AGL
Sbjct: 202 SENRQTLLFSATLPSALAEFAKAGL 226
>At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)
identical to cDNA DEAD box RNA helicase, RH28 GI:3776026
Length = 789
Score = 171 bits (416), Expect = 5e-43
Identities = 91/203 (44%), Positives = 128/203 (63%), Gaps = 1/203 (0%)
Frame = +3
Query: 204 FQSMGLSFPVLKGITKRGYKQPTPIQRKTIPIALTGKDVVAMARTGSGKTACFVLPILEK 383
F + LS P+L+ GYK+PTPIQ IP+ALTG+D+ A A TGSGKTA F LP LE+
Sbjct: 169 FMELNLSRPLLRACETLGYKKPTPIQAACIPLALTGRDLCASAITGSGKTAAFALPTLER 228
Query: 384 LLVPNNKPTPGKNLRALILSPTRELALQTLRFVRELGKFTGLTSAAILGGESIEQQFNVM 563
LL +P R LIL+PTRELA+Q ++ L +FT + I+GG S+ +Q V+
Sbjct: 229 LLF---RPKRVFATRVLILTPTRELAVQIHSMIQNLAQFTDIKCGLIVGGLSVREQ-EVV 284
Query: 564 SGSSPDIVVATPGRFL-HICIEMCLKLDNIKIVVFDEADRLFELGFGEQLQEICARLPSS 740
S PDIVVATPGR + H+ M + LD++ +++ DEADRL + GF ++ E+ P
Sbjct: 285 LRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLQTGFATEITELVRLCPKR 344
Query: 741 RQTLLFSATLPKMLVXFARAGLS 809
RQT+LFSAT+ + + + L+
Sbjct: 345 RQTMLFSATMTEEVKELVKLSLN 367
>At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar
to RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 760
Score = 147 bits (356), Expect = 9e-36
Identities = 82/203 (40%), Positives = 121/203 (59%), Gaps = 1/203 (0%)
Frame = +3
Query: 204 FQSMGLSFPVLKGITKRGYKQPTPIQRKTIPIALTGKDVVAMARTGSGKTACFVLPILEK 383
F+ G S ++ I K+ Y++PT IQ + +PI L+G+DV+ +A+TGSGKTA FVLP++
Sbjct: 230 FEDCGFSSQIMSAIKKQAYEKPTAIQCQALPIVLSGRDVIGIAKTGSGKTAAFVLPMIVH 289
Query: 384 LL-VPNNKPTPGKNLRALILSPTRELALQTLRFVRELGKFTGLTSAAILGGESIEQQFNV 560
++ P + G +I +PTRELA Q ++ K GL +A+ GG S +QF
Sbjct: 290 IMDQPELQRDEGP--IGVICAPTRELAHQIFLEAKKFSKAYGLRVSAVYGGMSKHEQFKE 347
Query: 561 MSGSSPDIVVATPGRFLHICIEMCLKLDNIKIVVFDEADRLFELGFGEQLQEICARLPSS 740
+ +IVVATPGR + + L + +V DEADR+F+LGF Q++ I ++
Sbjct: 348 LKAGC-EIVVATPGRLIDMLKMKALTMMRASYLVLDEADRMFDLGFEPQVRSIVGQIRPD 406
Query: 741 RQTLLFSATLPKMLVXFARAGLS 809
RQTLLFSAT+P + AR LS
Sbjct: 407 RQTLLFSATMPWKVEKLAREILS 429
>At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 144 bits (348), Expect = 8e-35
Identities = 80/197 (40%), Positives = 120/197 (60%), Gaps = 1/197 (0%)
Frame = +3
Query: 204 FQSMGLSFPVLKGITKRGYKQPTPIQRKTIPIALTGKDVVAMARTGSGKTACFVLPILEK 383
F+ L +LKGI ++G+++P+PIQ ++IPIALTG D++A A+ G+GKT F +P+LEK
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPVLEK 185
Query: 384 LLVPNNKPTPGKNLRALILSPTRELALQTLRFVRELGKFTGLTSAAILGGESIEQQFNVM 563
+ PNN ++A+IL PTRELALQT + +EL K+ + GG S+ ++M
Sbjct: 186 -IDPNNNV-----IQAMILVPTRELALQTSQVCKELSKYLNIQVMVTTGGTSLRD--DIM 237
Query: 564 SGSSP-DIVVATPGRFLHICIEMCLKLDNIKIVVFDEADRLFELGFGEQLQEICARLPSS 740
P ++V TPGR L + + L + ++V DEAD+L F L+E+ LP +
Sbjct: 238 RLHQPVHLLVGTPGRILDLTKKGVCVLKDCAMLVMDEADKLLSAEFQPSLEELIQFLPQN 297
Query: 741 RQTLLFSATLPKMLVXF 791
RQ L+FSAT P + F
Sbjct: 298 RQFLMFSATFPVTVKAF 314
>At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 144 bits (348), Expect = 8e-35
Identities = 80/197 (40%), Positives = 120/197 (60%), Gaps = 1/197 (0%)
Frame = +3
Query: 204 FQSMGLSFPVLKGITKRGYKQPTPIQRKTIPIALTGKDVVAMARTGSGKTACFVLPILEK 383
F+ L +LKGI ++G+++P+PIQ ++IPIALTG D++A A+ G+GKT F +P+LEK
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPVLEK 185
Query: 384 LLVPNNKPTPGKNLRALILSPTRELALQTLRFVRELGKFTGLTSAAILGGESIEQQFNVM 563
+ PNN ++A+IL PTRELALQT + +EL K+ + GG S+ ++M
Sbjct: 186 -IDPNNNV-----IQAMILVPTRELALQTSQVCKELSKYLNIQVMVTTGGTSLRD--DIM 237
Query: 564 SGSSP-DIVVATPGRFLHICIEMCLKLDNIKIVVFDEADRLFELGFGEQLQEICARLPSS 740
P ++V TPGR L + + L + ++V DEAD+L F L+E+ LP +
Sbjct: 238 RLHQPVHLLVGTPGRILDLTKKGVCVLKDCAMLVMDEADKLLSAEFQPSLEELIQFLPQN 297
Query: 741 RQTLLFSATLPKMLVXF 791
RQ L+FSAT P + F
Sbjct: 298 RQFLMFSATFPVTVKAF 314
>At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 142 bits (343), Expect = 3e-34
Identities = 78/197 (39%), Positives = 121/197 (61%), Gaps = 1/197 (0%)
Frame = +3
Query: 204 FQSMGLSFPVLKGITKRGYKQPTPIQRKTIPIALTGKDVVAMARTGSGKTACFVLPILEK 383
F+ L +L GI ++G+++P+PIQ ++IPIALTG+D++A A+ G+GKTA F +P+LEK
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGKTAAFCIPVLEK 192
Query: 384 LLVPNNKPTPGKNLRALILSPTRELALQTLRFVRELGKFTGLTSAAILGGESIEQQFNVM 563
+ NN ++A+I+ PTRELALQT + +ELGK + GG S++ ++M
Sbjct: 193 IDQDNNV------IQAVIIVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKD--DIM 244
Query: 564 SGSSP-DIVVATPGRFLHICIEMCLKLDNIKIVVFDEADRLFELGFGEQLQEICARLPSS 740
P ++V TPGR L + + L + ++V DEAD+L F ++ + + LP S
Sbjct: 245 RLYQPVHLLVGTPGRILDLTKKGVCVLKDCSVLVMDEADKLLSQEFQPSVEHLISFLPES 304
Query: 741 RQTLLFSATLPKMLVXF 791
RQ L+FSAT P + F
Sbjct: 305 RQILMFSATFPVTVKDF 321
>At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 142 bits (343), Expect = 3e-34
Identities = 78/197 (39%), Positives = 121/197 (61%), Gaps = 1/197 (0%)
Frame = +3
Query: 204 FQSMGLSFPVLKGITKRGYKQPTPIQRKTIPIALTGKDVVAMARTGSGKTACFVLPILEK 383
F+ L +L GI ++G+++P+PIQ ++IPIALTG+D++A A+ G+GKTA F +P+LEK
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGKTAAFCIPVLEK 192
Query: 384 LLVPNNKPTPGKNLRALILSPTRELALQTLRFVRELGKFTGLTSAAILGGESIEQQFNVM 563
+ NN ++A+I+ PTRELALQT + +ELGK + GG S++ ++M
Sbjct: 193 IDQDNNV------IQAVIIVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKD--DIM 244
Query: 564 SGSSP-DIVVATPGRFLHICIEMCLKLDNIKIVVFDEADRLFELGFGEQLQEICARLPSS 740
P ++V TPGR L + + L + ++V DEAD+L F ++ + + LP S
Sbjct: 245 RLYQPVHLLVGTPGRILDLTKKGVCVLKDCSVLVMDEADKLLSQEFQPSVEHLISFLPES 304
Query: 741 RQTLLFSATLPKMLVXF 791
RQ L+FSAT P + F
Sbjct: 305 RQILMFSATFPVTVKDF 321
>At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9)
similar to RNA helicases GI:3775995, GI:3775987
[Arabidopsis thaliana]; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 610
Score = 141 bits (342), Expect = 4e-34
Identities = 72/194 (37%), Positives = 117/194 (60%)
Frame = +3
Query: 201 AFQSMGLSFPVLKGITKRGYKQPTPIQRKTIPIALTGKDVVAMARTGSGKTACFVLPILE 380
A +G+S ++K + RG ++ PIQ+ + A+ G+D++ ARTG+GKT F +PI++
Sbjct: 117 AIADLGISPEIVKALKGRGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIID 176
Query: 381 KLLVPNNKPTPGKNLRALILSPTRELALQTLRFVRELGKFTGLTSAAILGGESIEQQFNV 560
K++ N K GKN + L+L+PTRELA Q + RE L + + GG I QQ
Sbjct: 177 KIIKFNAKHGRGKNPQCLVLAPTRELARQVEKEFRE--SAPSLDTICLYGGTPIGQQMRE 234
Query: 561 MSGSSPDIVVATPGRFLHICIEMCLKLDNIKIVVFDEADRLFELGFGEQLQEICARLPSS 740
++ D+ V TPGR + + L L ++ VV DEAD++ ++GF E ++ I +LP+
Sbjct: 235 LN-YGIDVAVGTPGRIIDLMKRGALNLSEVQFVVLDEADQMLQVGFAEDVEIILQKLPAK 293
Query: 741 RQTLLFSATLPKML 782
RQ+++FSAT+P +
Sbjct: 294 RQSMMFSATMPSWI 307
>At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative
Length = 528
Score = 140 bits (340), Expect = 8e-34
Identities = 78/197 (39%), Positives = 119/197 (60%), Gaps = 1/197 (0%)
Frame = +3
Query: 204 FQSMGLSFPVLKGITKRGYKQPTPIQRKTIPIALTGKDVVAMARTGSGKTACFVLPILEK 383
F+ L +L+GI ++G+++P+PIQ ++IPIALTG D++A A+ G+GKT F +P LEK
Sbjct: 156 FEDYFLKRDLLRGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPTLEK 215
Query: 384 LLVPNNKPTPGKNLRALILSPTRELALQTLRFVRELGKFTGLTSAAILGGESIEQQFNVM 563
+ NN ++A+IL PTRELALQT + +EL K+ + GG S+ ++M
Sbjct: 216 IDPENNV------IQAVILVPTRELALQTSQVCKELSKYLKIEVMVTTGGTSLRD--DIM 267
Query: 564 SGSSP-DIVVATPGRFLHICIEMCLKLDNIKIVVFDEADRLFELGFGEQLQEICARLPSS 740
P ++V TPGR L + + L + ++V DEAD+L + F ++E+ LP S
Sbjct: 268 RLYQPVHLLVGTPGRILDLAKKGVCVLKDCAMLVMDEADKLLSVEFQPSIEELIQFLPES 327
Query: 741 RQTLLFSATLPKMLVXF 791
RQ L+FSAT P + F
Sbjct: 328 RQILMFSATFPVTVKSF 344
>At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)
probable replication protein A1, Oryza sativa,
EMBL:AF009179
Length = 456
Score = 140 bits (339), Expect = 1e-33
Identities = 82/208 (39%), Positives = 117/208 (56%), Gaps = 7/208 (3%)
Frame = +3
Query: 204 FQSMGLSFPVLKGITKRGYKQPTPIQRKTIPIALTGKDVVAMARTGSGKTACFVLPILEK 383
F +G+ ++K + G+K P+ IQ + +P AL GKDV+ +A+TGSGKT F +PIL+
Sbjct: 11 FAELGVREELVKACERLGWKNPSKIQAEALPFALEGKDVIGLAQTGSGKTGAFAIPILQA 70
Query: 384 LL--VPNNKPTPGKN----LRALILSPTRELALQTLRFVRELGKFTGLTSAAILGGESIE 545
LL V +++P G+ A +LSPTRELA+Q LG L A ++GG
Sbjct: 71 LLEYVYDSEPKKGRRPDPAFFACVLSPTRELAIQIAEQFEALGADISLRCAVLVGGIDRM 130
Query: 546 QQFNVMSGSSPDIVVATPGRFL-HICIEMCLKLDNIKIVVFDEADRLFELGFGEQLQEIC 722
QQ + G P ++VATPGR H+ L ++K +V DEADRL F + L +I
Sbjct: 131 QQ-TIALGKRPHVIVATPGRLWDHMSDTKGFSLKSLKYLVLDEADRLLNEDFEKSLNQIL 189
Query: 723 ARLPSSRQTLLFSATLPKMLVXFARAGL 806
+P R+T LFSAT+ K + RA L
Sbjct: 190 EEIPLERKTFLFSATMTKKVRKLQRACL 217
>At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar to
RNA helicases GI:3775995, GI:3775987 from [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 616
Score = 139 bits (337), Expect = 2e-33
Identities = 70/194 (36%), Positives = 115/194 (59%)
Frame = +3
Query: 201 AFQSMGLSFPVLKGITKRGYKQPTPIQRKTIPIALTGKDVVAMARTGSGKTACFVLPILE 380
A +G+S ++K ++ +G ++ PIQ+ + A+ G+D++ ARTG+GKT F +PI++
Sbjct: 105 AISELGISPEIVKALSSKGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIID 164
Query: 381 KLLVPNNKPTPGKNLRALILSPTRELALQTLRFVRELGKFTGLTSAAILGGESIEQQFNV 560
K++ N K G+N L+L+PTRELA Q + RE L + + GG I QQ
Sbjct: 165 KIIKYNAKHGRGRNPLCLVLAPTRELARQVEKEFRE--SAPSLDTICLYGGTPIGQQMRQ 222
Query: 561 MSGSSPDIVVATPGRFLHICIEMCLKLDNIKIVVFDEADRLFELGFGEQLQEICARLPSS 740
+ D+ V TPGR + + L L ++ VV DEAD++ ++GF E ++ I +LP
Sbjct: 223 LD-YGVDVAVGTPGRVIDLMKRGALNLSEVQFVVLDEADQMLQVGFAEDVEIILEKLPEK 281
Query: 741 RQTLLFSATLPKML 782
RQ+++FSAT+P +
Sbjct: 282 RQSMMFSATMPSWI 295
>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
Pfam profiles PF00270:DEAD/DEAH box helicase and
PF00271: Helicase conserved C-terminal domain;
identical to cDNA RH27 helicase, partial GI:4033334
Length = 633
Score = 138 bits (333), Expect = 5e-33
Identities = 80/203 (39%), Positives = 117/203 (57%), Gaps = 1/203 (0%)
Frame = +3
Query: 204 FQSMGLSFPVLKGITKRGYKQPTPIQRKTIPIALTGKDVVAMARTGSGKTACFVLPILEK 383
F+S+ LS K I + G+ + T IQ K IP + G+DV+ ARTGSGKT F++P +E
Sbjct: 156 FESLSLSDNTYKSIKEMGFARMTQIQAKAIPPLMMGEDVLGAARTGSGKTLAFLIPAVE- 214
Query: 384 LLVPNNKPTPGKNLRALILSPTRELALQTLRFVRELGKFTGLTSAAILGGESIEQQFNVM 563
L+ K TP L++ PTRELA+Q+ +EL K+ T ++GGE + + ++
Sbjct: 215 -LLYRVKFTPRNGTGVLVICPTRELAIQSYGVAKELLKYHSQTVGKVIGGEKRKTEAEIL 273
Query: 564 SGSSPDIVVATPGRFL-HICIEMCLKLDNIKIVVFDEADRLFELGFGEQLQEICARLPSS 740
+ +++VATPGR L H+ N+K +V DEADR+ E F E L++I LP +
Sbjct: 274 A-KGVNLLVATPGRLLDHLENTNGFIFKNLKFLVMDEADRILEQNFEEDLKKILNLLPKT 332
Query: 741 RQTLLFSATLPKMLVXFARAGLS 809
RQT LFSAT + AR L+
Sbjct: 333 RQTSLFSATQSAKVEDLARVSLT 355
>At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar
to RNA helicase GB:A57514 GI:897915 from [Rattus
norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 989
Score = 138 bits (333), Expect = 5e-33
Identities = 75/202 (37%), Positives = 116/202 (57%), Gaps = 4/202 (1%)
Frame = +3
Query: 216 GLSFPVLKGITKRGYKQPTPIQRKTIPIALTGKDVVAMARTGSGKTACFVLPILEKLLVP 395
GL+ +L + K Y++P PIQ + +PI ++G+D + +A+TGSGKT FVLP+L +
Sbjct: 402 GLTSKILDTLKKLNYEKPMPIQAQALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRH--IK 459
Query: 396 NNKPT-PGKNLRALILSPTRELALQTLRFVRELGKFTGLTSAAILGGESIEQQFNVMSGS 572
+ P G L+++PTREL Q +R+ K G+ + GG + QQ + +
Sbjct: 460 DQPPVEAGDGPIGLVMAPTRELVQQIYSDIRKFSKALGIICVPVYGGSGVAQQISELKRG 519
Query: 573 SPDIVVATPGRFLHICIEMCLKLDNIKIV---VFDEADRLFELGFGEQLQEICARLPSSR 743
+ +IVV TPGR + I K+ N++ V V DEADR+F++GF Q+ I + R
Sbjct: 520 T-EIVVCTPGRMIDILCTSSGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDR 578
Query: 744 QTLLFSATLPKMLVXFARAGLS 809
QT+LFSAT P+ + AR L+
Sbjct: 579 QTVLFSATFPRQVETLARKVLN 600
>At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicase GB:6321111 from (S.
cerevisiae)
Length = 558
Score = 137 bits (331), Expect = 9e-33
Identities = 71/198 (35%), Positives = 114/198 (57%), Gaps = 2/198 (1%)
Frame = +3
Query: 219 LSFPVLKGITKRGYKQPTPIQRKTIPIALTGKDVVAMARTGSGKTACFVLPILEKLLVPN 398
LS +++ + + G++ TP+Q +TIP + KDVV A TGSGKT F+LP +E + N
Sbjct: 23 LSEDIIEALDRSGFEVCTPVQAETIPFLCSHKDVVVDAATGSGKTLAFLLPFIEIIRRSN 82
Query: 399 NKPTPGKNLRALILSPTRELALQTLRFVRE-LGKFTGLTSAAILGGESIEQQFNVMSGSS 575
+ P + +I+SPTREL+ Q + + + S ++GG +E N +
Sbjct: 83 SYPPKPHQVMGVIISPTRELSAQIHKVAEPFVSTLPNVNSVLLVGGREVEADMNTLEEEG 142
Query: 576 PDIVVATPGRFLHICIEM-CLKLDNIKIVVFDEADRLFELGFGEQLQEICARLPSSRQTL 752
++++ TPGR + M L N++I++ DEADRL ++GF +Q+ I +RLP R+T
Sbjct: 143 ANLLIGTPGRLSDMMKRMEFLDFRNLEILILDEADRLLDMGFQKQVNYIISRLPKQRRTG 202
Query: 753 LFSATLPKMLVXFARAGL 806
LFSAT + + A+AGL
Sbjct: 203 LFSATQTQAVADLAKAGL 220
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains Pfam
profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 136 bits (330), Expect = 1e-32
Identities = 75/202 (37%), Positives = 116/202 (57%), Gaps = 4/202 (1%)
Frame = +3
Query: 216 GLSFPVLKGITKRGYKQPTPIQRKTIPIALTGKDVVAMARTGSGKTACFVLPILEKLLVP 395
GL+ +L + K Y++P PIQ + +PI ++G+D + +A+TGSGKT FVLP+L +
Sbjct: 535 GLTSKILDTMKKLNYEKPMPIQTQALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRH--IK 592
Query: 396 NNKPT-PGKNLRALILSPTRELALQTLRFVRELGKFTGLTSAAILGGESIEQQFNVMSGS 572
+ P G L+++PTREL Q +R+ K G+ + GG + QQ + +
Sbjct: 593 DQPPVEAGDGPIGLVMAPTRELVQQIHSDIRKFSKPLGIRCVPVYGGSGVAQQISELKRG 652
Query: 573 SPDIVVATPGRFLHICIEMCLKLDNIKIVVF---DEADRLFELGFGEQLQEICARLPSSR 743
+ +IVV TPGR + I K+ N++ V F DEADR+F++GF Q+ I + R
Sbjct: 653 T-EIVVCTPGRMIDILCTSSGKITNLRRVTFLVMDEADRMFDMGFEPQITRIIQNIRPER 711
Query: 744 QTLLFSATLPKMLVXFARAGLS 809
QT+LFSAT P+ + AR L+
Sbjct: 712 QTVLFSATFPRQVETLARKVLN 733
>At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative
Length = 591
Score = 134 bits (325), Expect = 5e-32
Identities = 81/212 (38%), Positives = 119/212 (56%), Gaps = 11/212 (5%)
Frame = +3
Query: 204 FQSMGLSFPVLKGITKRGYKQPTPIQRKTIPIALTGKDVVAMARTGSGKTACFVLPIL-- 377
F+ M PVL + ++G QPTPIQ + +P+ L G+D++ +A TGSGKT FVLP++
Sbjct: 148 FKDMKFPRPVLDTLKEKGIVQPTPIQVQGLPVILAGRDMIGIAFTGSGKTLVFVLPMIMI 207
Query: 378 ---EKLLVPNNKPTPGKNLRALILSPTRELALQTLRFVREL------GKFTGLTSAAILG 530
E++++P G+ LI+ P+RELA QT V + + L S +G
Sbjct: 208 ALQEEMMMPI---AAGEGPIGLIVCPSRELARQTYEVVEQFVAPLVEAGYPPLRSLLCIG 264
Query: 531 GESIEQQFNVMSGSSPDIVVATPGRFLHICIEMCLKLDNIKIVVFDEADRLFELGFGEQL 710
G + Q V+ IVVATPGR + + + LD + + DEADRL +LGF + +
Sbjct: 265 GIDMRSQLEVVK-RGVHIVVATPGRLKDMLAKKKMSLDACRYLTLDEADRLVDLGFEDDI 323
Query: 711 QEICARLPSSRQTLLFSATLPKMLVXFARAGL 806
+E+ S RQTLLFSAT+P + FAR+ L
Sbjct: 324 REVFDHFKSQRQTLLFSATMPTKIQIFARSAL 355
>At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA
helicase DBP2 - Saccharomyces cerevisiae, PID:g5272
Length = 542
Score = 133 bits (322), Expect = 1e-31
Identities = 80/212 (37%), Positives = 122/212 (57%), Gaps = 11/212 (5%)
Frame = +3
Query: 204 FQSMGLSFPVLKGITKRGYKQPTPIQRKTIPIALTGKDVVAMARTGSGKTACFVLPIL-- 377
F M P+L+ + +G PTPIQ + +P+ L+G+D++ +A TGSGKT FVLP++
Sbjct: 99 FMDMKFPSPLLRMLKDKGIMHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIIL 158
Query: 378 ---EKLLVPNNKPTPGKNLRALILSPTRELALQTL----RFVRELGK--FTGLTSAAILG 530
E++++P G+ AL++ P+RELA QT +FV L + + L S +G
Sbjct: 159 ALQEEIMMPI---AAGEGPIALVICPSRELAKQTYDVVEQFVASLVEDGYPRLRSLLCIG 215
Query: 531 GESIEQQFNVMSGSSPDIVVATPGRFLHICIEMCLKLDNIKIVVFDEADRLFELGFGEQL 710
G + Q +V+ IVVATPGR I + + LD +++ DEADRL +LGF + +
Sbjct: 216 GVDMRSQLDVVK-KGVHIVVATPGRLKDILAKKKMSLDACRLLTLDEADRLVDLGFEDDI 274
Query: 711 QEICARLPSSRQTLLFSATLPKMLVXFARAGL 806
+ + S RQTLLFSAT+P + FA + L
Sbjct: 275 RHVFDHFKSQRQTLLFSATMPAKIQIFATSAL 306
>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 1088
Score = 132 bits (320), Expect = 2e-31
Identities = 73/191 (38%), Positives = 109/191 (57%)
Frame = +3
Query: 204 FQSMGLSFPVLKGITKRGYKQPTPIQRKTIPIALTGKDVVAMARTGSGKTACFVLPILEK 383
F+S GL +L+ + G+ PTPIQ +T PIAL +D+VA+A+TGSGKT +++P
Sbjct: 437 FESSGLPPEILRELLSAGFPSPTPIQAQTWPIALQSRDIVAIAKTGSGKTLGYLIPAFIL 496
Query: 384 LLVPNNKPTPGKNLRALILSPTRELALQTLRFVRELGKFTGLTSAAILGGESIEQQFNVM 563
L N G + LIL+PTRELA Q G+ + ++ + GG Q +
Sbjct: 497 LRHCRNDSRNGPTV--LILAPTRELATQIQDEALRFGRSSRISCTCLYGGAPKGPQLKEL 554
Query: 564 SGSSPDIVVATPGRFLHICIEMCLKLDNIKIVVFDEADRLFELGFGEQLQEICARLPSSR 743
+ DIVVATPGR I + + ++V DEADR+ ++GF Q+++I +P R
Sbjct: 555 ERGA-DIVVATPGRLNDILEMKMIDFQQVSLLVLDEADRMLDMGFEPQIRKIVNEIPPRR 613
Query: 744 QTLLFSATLPK 776
QTL+++AT PK
Sbjct: 614 QTLMYTATWPK 624
>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 132 bits (318), Expect = 3e-31
Identities = 72/192 (37%), Positives = 112/192 (58%)
Frame = +3
Query: 201 AFQSMGLSFPVLKGITKRGYKQPTPIQRKTIPIALTGKDVVAMARTGSGKTACFVLPILE 380
+F++ G +L+ + G+ PTPIQ ++ PIA+ G+D+VA+A+TGSGKT +++P
Sbjct: 159 SFEATGFPPELLREVLSAGFSAPTPIQAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFL 218
Query: 381 KLLVPNNKPTPGKNLRALILSPTRELALQTLRFVRELGKFTGLTSAAILGGESIEQQFNV 560
L N G + L+LSPTRELA Q + G+ + ++ + GG Q
Sbjct: 219 HLQRIRNDSRMGPTI--LVLSPTRELATQIQEEAVKFGRSSRISCTCLYGGAPKGPQLRD 276
Query: 561 MSGSSPDIVVATPGRFLHICIEMCLKLDNIKIVVFDEADRLFELGFGEQLQEICARLPSS 740
+ + DIVVATPGR I + L I +V DEADR+ ++GF Q+++I +P+
Sbjct: 277 LERGA-DIVVATPGRLNDILEMRRISLRQISYLVLDEADRMLDMGFEPQIRKIVKEIPTK 335
Query: 741 RQTLLFSATLPK 776
RQTL+++AT PK
Sbjct: 336 RQTLMYTATWPK 347
>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 132 bits (318), Expect = 3e-31
Identities = 72/192 (37%), Positives = 112/192 (58%)
Frame = +3
Query: 201 AFQSMGLSFPVLKGITKRGYKQPTPIQRKTIPIALTGKDVVAMARTGSGKTACFVLPILE 380
+F++ G +L+ + G+ PTPIQ ++ PIA+ G+D+VA+A+TGSGKT +++P
Sbjct: 159 SFEATGFPPELLREVLSAGFSAPTPIQAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFL 218
Query: 381 KLLVPNNKPTPGKNLRALILSPTRELALQTLRFVRELGKFTGLTSAAILGGESIEQQFNV 560
L N G + L+LSPTRELA Q + G+ + ++ + GG Q
Sbjct: 219 HLQRIRNDSRMGPTI--LVLSPTRELATQIQEEAVKFGRSSRISCTCLYGGAPKGPQLRD 276
Query: 561 MSGSSPDIVVATPGRFLHICIEMCLKLDNIKIVVFDEADRLFELGFGEQLQEICARLPSS 740
+ + DIVVATPGR I + L I +V DEADR+ ++GF Q+++I +P+
Sbjct: 277 LERGA-DIVVATPGRLNDILEMRRISLRQISYLVLDEADRMLDMGFEPQIRKIVKEIPTK 335
Query: 741 RQTLLFSATLPK 776
RQTL+++AT PK
Sbjct: 336 RQTLMYTATWPK 347
>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 618
Score = 132 bits (318), Expect = 3e-31
Identities = 72/192 (37%), Positives = 112/192 (58%)
Frame = +3
Query: 201 AFQSMGLSFPVLKGITKRGYKQPTPIQRKTIPIALTGKDVVAMARTGSGKTACFVLPILE 380
+F++ G +L+ + G+ PTPIQ ++ PIA+ G+D+VA+A+TGSGKT +++P
Sbjct: 159 SFEATGFPPELLREVLSAGFSAPTPIQAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFL 218
Query: 381 KLLVPNNKPTPGKNLRALILSPTRELALQTLRFVRELGKFTGLTSAAILGGESIEQQFNV 560
L N G + L+LSPTRELA Q + G+ + ++ + GG Q
Sbjct: 219 HLQRIRNDSRMGPTI--LVLSPTRELATQIQEEAVKFGRSSRISCTCLYGGAPKGPQLRD 276
Query: 561 MSGSSPDIVVATPGRFLHICIEMCLKLDNIKIVVFDEADRLFELGFGEQLQEICARLPSS 740
+ + DIVVATPGR I + L I +V DEADR+ ++GF Q+++I +P+
Sbjct: 277 LERGA-DIVVATPGRLNDILEMRRISLRQISYLVLDEADRMLDMGFEPQIRKIVKEIPTK 335
Query: 741 RQTLLFSATLPK 776
RQTL+++AT PK
Sbjct: 336 RQTLMYTATWPK 347
>At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative
Length = 739
Score = 130 bits (314), Expect = 1e-30
Identities = 77/203 (37%), Positives = 115/203 (56%), Gaps = 2/203 (0%)
Frame = +3
Query: 204 FQSMGLSFPVLKGITKRGYKQPTPIQRKTIPIALTGKDVVAMARTGSGKTACFVLPILEK 383
F + +S +G+ Y T +Q IP AL G+D++ ARTGSGKT FV+PILEK
Sbjct: 73 FAQLPISDKTKRGLKDAKYVDMTDVQSAAIPHALCGRDILGAARTGSGKTLAFVIPILEK 132
Query: 384 LLVPNNKPTPGKNLRALILSPTRELALQTLRFVRELGKFTGLTSAAILGG-ESIEQQFNV 560
L + +P + +I+SPTRELA QT + ++GKF ++ ++GG E ++ +
Sbjct: 133 L--HRERWSPEDGVGCIIISPTRELAAQTFGVLNKVGKFHKFSAGLLIGGREGVDVEKER 190
Query: 561 MSGSSPDIVVATPGRFL-HICIEMCLKLDNIKIVVFDEADRLFELGFGEQLQEICARLPS 737
+ +I+V PGR L H+ + ++I++ DEADR+ + F QL I ++LP
Sbjct: 191 V--HEMNILVCAPGRLLQHMDETPNFECPQLQILILDEADRVLDSAFKGQLDPIISQLPK 248
Query: 738 SRQTLLFSATLPKMLVXFARAGL 806
RQTLLFSAT K + AR L
Sbjct: 249 HRQTLLFSATQTKKVKDLARLSL 271
>At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative similar
to p68 RNA helicase [Schizosaccharomyces pombe]
GI:173419
Length = 537
Score = 130 bits (314), Expect = 1e-30
Identities = 71/175 (40%), Positives = 103/175 (58%), Gaps = 3/175 (1%)
Frame = +3
Query: 258 YKQPTPIQRKTIPIALTGKDVVAMARTGSGKTACFVLPILEKLLVPNNKPTPGK---NLR 428
+++P+PIQ T P L G+D++ +A+TGSGKT F +P + +L N K G N
Sbjct: 134 FEKPSPIQSHTWPFLLDGRDLIGIAKTGSGKTLAFGIPAIMHVLKKNKKIGGGSKKVNPT 193
Query: 429 ALILSPTRELALQTLRFVRELGKFTGLTSAAILGGESIEQQFNVMSGSSPDIVVATPGRF 608
L+LSPTRELA+Q +RE G+ GL S + GG S Q + + S DIV+ TPGR
Sbjct: 194 CLVLSPTRELAVQISDVLREAGEPCGLKSICVYGGSSKGPQISAIR-SGVDIVIGTPGRL 252
Query: 609 LHICIEMCLKLDNIKIVVFDEADRLFELGFGEQLQEICARLPSSRQTLLFSATLP 773
+ L+L ++ VV DEADR+ ++GF E ++ I + RQ ++FSAT P
Sbjct: 253 RDLIESNVLRLSDVSFVVLDEADRMLDMGFEEPVRFILSNTNKVRQMVMFSATWP 307
>At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 591
Score = 128 bits (310), Expect = 3e-30
Identities = 75/200 (37%), Positives = 116/200 (58%), Gaps = 2/200 (1%)
Frame = +3
Query: 204 FQSMGLSFPVLKGITKRGYKQPTPIQRKTIPIALTGKDVVAMARTGSGKTACFVLPILEK 383
FQ +L+ I K G+ +PTPIQ + P+AL G+D++ +A TGSGKT ++LP L
Sbjct: 167 FQDANFPDNILEAIAKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPALVH 226
Query: 384 LLVPNNKPTPGKNLR--ALILSPTRELALQTLRFVRELGKFTGLTSAAILGGESIEQQFN 557
+ + +P G++ LIL+PTRELA+Q R+ G +G+ S I GG Q
Sbjct: 227 V---SAQPRLGQDDGPIVLILAPTRELAVQIQEESRKFGLRSGVRSTCIYGGAPKGPQIR 283
Query: 558 VMSGSSPDIVVATPGRFLHICIEMCLKLDNIKIVVFDEADRLFELGFGEQLQEICARLPS 737
+ +IV+ATPGR + + L + +V DEADR+ ++GF Q+++I +++
Sbjct: 284 DLR-RGVEIVIATPGRLIDMLECQHTNLKRVTYLVLDEADRMLDMGFEPQIRKIVSQIRP 342
Query: 738 SRQTLLFSATLPKMLVXFAR 797
RQTLL+SAT P+ + AR
Sbjct: 343 DRQTLLWSATWPREVETLAR 362
>At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 484
Score = 128 bits (310), Expect = 3e-30
Identities = 75/200 (37%), Positives = 116/200 (58%), Gaps = 2/200 (1%)
Frame = +3
Query: 204 FQSMGLSFPVLKGITKRGYKQPTPIQRKTIPIALTGKDVVAMARTGSGKTACFVLPILEK 383
FQ +L+ I K G+ +PTPIQ + P+AL G+D++ +A TGSGKT ++LP L
Sbjct: 167 FQDANFPDNILEAIAKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPALVH 226
Query: 384 LLVPNNKPTPGKNLR--ALILSPTRELALQTLRFVRELGKFTGLTSAAILGGESIEQQFN 557
+ + +P G++ LIL+PTRELA+Q R+ G +G+ S I GG Q
Sbjct: 227 V---SAQPRLGQDDGPIVLILAPTRELAVQIQEESRKFGLRSGVRSTCIYGGAPKGPQIR 283
Query: 558 VMSGSSPDIVVATPGRFLHICIEMCLKLDNIKIVVFDEADRLFELGFGEQLQEICARLPS 737
+ +IV+ATPGR + + L + +V DEADR+ ++GF Q+++I +++
Sbjct: 284 DLR-RGVEIVIATPGRLIDMLECQHTNLKRVTYLVLDEADRMLDMGFEPQIRKIVSQIRP 342
Query: 738 SRQTLLFSATLPKMLVXFAR 797
RQTLL+SAT P+ + AR
Sbjct: 343 DRQTLLWSATWPREVETLAR 362
>At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18)
Length = 593
Score = 128 bits (309), Expect = 4e-30
Identities = 69/198 (34%), Positives = 111/198 (56%), Gaps = 2/198 (1%)
Frame = +3
Query: 219 LSFPVLKGITKRGYKQPTPIQRKTIPIALTGKDVVAMARTGSGKTACFVLPILEKLLVPN 398
LS +++ + + ++ TP+Q TIP+ + KDV A TGSGKT FV+P++E L
Sbjct: 23 LSGDIIEALNQSDFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRST 82
Query: 399 NKPTPGKNLRALILSPTRELALQTLRFVRE-LGKFTGLTSAAILGGESIEQQFNVMSGSS 575
+ P + +I+SPTREL+ Q + + + S ++GG ++ ++
Sbjct: 83 SFPPKPHQVMGVIISPTRELSTQIYNVAQPFVSTLANVNSVLLVGGREVKADMKIIEEEG 142
Query: 576 PDIVVATPGRFLHICIEM-CLKLDNIKIVVFDEADRLFELGFGEQLQEICARLPSSRQTL 752
++++ TPGR I M L N++I++ DEADRL E+GF Q+ I +RLP R+T
Sbjct: 143 CNVLIGTPGRLSDIMERMEILDFRNLEILILDEADRLLEMGFQRQVNYIISRLPKQRRTG 202
Query: 753 LFSATLPKMLVXFARAGL 806
LFSAT + + A+AGL
Sbjct: 203 LFSATQTEGVEELAKAGL 220
>At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 505
Score = 128 bits (309), Expect = 4e-30
Identities = 74/194 (38%), Positives = 116/194 (59%), Gaps = 3/194 (1%)
Frame = +3
Query: 204 FQSMGLSFPVLKGITKRGYKQPTPIQRKTIPIALTGKDVVAMARTGSGKTACFVLPILEK 383
F S GL +L + GY PTPIQ + IP ALTGK ++A A TGSGKTA F++PI+ +
Sbjct: 112 FTSCGLPPKLLLNLETAGYDFPTPIQMQAIPAALTGKSLLASADTGSGKTASFLVPIISR 171
Query: 384 LLVPNNK-PT-PGKNLRALILSPTRELALQTLRFVRELGKFTGLTSAAILGGESIE-QQF 554
+++ P+ +N A++L+PTREL +Q + LGK +A ++GG+ + Q +
Sbjct: 172 CTTYHSEHPSDQRRNPLAMVLAPTRELCVQVEDQAKMLGKGLPFKTALVVGGDPMSGQLY 231
Query: 555 NVMSGSSPDIVVATPGRFLHICIEMCLKLDNIKIVVFDEADRLFELGFGEQLQEICARLP 734
+ G ++++ TPGR + + + ++LDNI V DE D + + GF +Q+ +I L
Sbjct: 232 RIQQG--VELIIGTPGRVVDLLSKHTIELDNIMTFVLDEVDCMLQRGFRDQVMQIFQAL- 288
Query: 735 SSRQTLLFSATLPK 776
S Q LLFSAT+ +
Sbjct: 289 SQPQVLLFSATISR 302
>At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative similar
to gb|L13612 DEAD-box protein (dbp45A) from Drosophila
melanogaster and is a member of PF|00270 DEAD/DEAH box
helicase family
Length = 491
Score = 126 bits (305), Expect = 1e-29
Identities = 78/201 (38%), Positives = 117/201 (58%), Gaps = 4/201 (1%)
Frame = +3
Query: 192 SSGAFQSMGLSFPVLKGITKRGYKQPTPIQRKTIPIALTGKDVVAMARTGSGKTACFVLP 371
S+ F+ +GL+ ++ + G ++PTP+Q +P L G+DV+ +A+TGSGKTA F LP
Sbjct: 56 SATNFEGLGLAEWAVETCKELGMRKPTPVQTHCVPKILAGRDVLGLAQTGSGKTAAFALP 115
Query: 372 ILEKLLVPNNKPTPGKNLRALILSPTRELALQTLRFVRELGKFTGLTSAAILGG-ESIEQ 548
IL +L P + AL+++PTRELA Q + LG L + I+GG + + Q
Sbjct: 116 ILHRLA---EDP---YGVFALVVTPTRELAFQLAEQFKALGSCLNLRCSVIVGGMDMLTQ 169
Query: 549 QFNVMSGSSPDIVVATPGR---FLHICIEMCLKLDNIKIVVFDEADRLFELGFGEQLQEI 719
+++ S P IV+ TPGR L ++ K +V DEADR+ ++GF ++L+ I
Sbjct: 170 TMSLV--SRPHIVITTPGRIKVLLENNPDVPPVFSRTKFLVLDEADRVLDVGFQDELRTI 227
Query: 720 CARLPSSRQTLLFSATLPKML 782
LP SRQTLLFSAT+ L
Sbjct: 228 FQCLPKSRQTLLFSATMTSNL 248
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 126 bits (304), Expect = 2e-29
Identities = 72/203 (35%), Positives = 116/203 (57%), Gaps = 4/203 (1%)
Frame = +3
Query: 201 AFQSMGLSFPVLKGITKRGYKQPTPIQRKTIPIALTGKDVVAMARTGSGKTACFVLPILE 380
A + L + + + KRG PIQR + AL G+D++A A+TG+GKT F +PI++
Sbjct: 103 AISKLSLPQRLEESLEKRGITHLFPIQRAVLVPALQGRDIIARAKTGTGKTLAFGIPIIK 162
Query: 381 KLLVPNNKPTP----GKNLRALILSPTRELALQTLRFVRELGKFTGLTSAAILGGESIEQ 548
+L T G+ + L+L+PTRELA Q + ++E + L++ + GG S
Sbjct: 163 RLTEEAGDYTAFRRSGRLPKFLVLAPTRELAKQVEKEIKESAPY--LSTVCVYGGVSYTI 220
Query: 549 QFNVMSGSSPDIVVATPGRFLHICIEMCLKLDNIKIVVFDEADRLFELGFGEQLQEICAR 728
Q + ++ D+VV TPGR + + LKL ++ +V DEAD++ +GF E ++ I
Sbjct: 221 QQSALT-RGVDVVVGTPGRIIDLIEGRSLKLGEVEYLVLDEADQMLAVGFEEAVESILEN 279
Query: 729 LPSSRQTLLFSATLPKMLVXFAR 797
LP+ RQ++LFSAT+P + AR
Sbjct: 280 LPTKRQSMLFSATMPTWVKKLAR 302
>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 646
Score = 126 bits (304), Expect = 2e-29
Identities = 77/210 (36%), Positives = 112/210 (53%), Gaps = 8/210 (3%)
Frame = +3
Query: 204 FQSMGLSFPVLKGITKRGYKQPTPIQRKTIPIALTGKDVVAMARTGSGKTACFVLPILEK 383
F + L + I + Y +PTP+QR IPI G+D++A A+TGSGKTA F PI+
Sbjct: 148 FAEIDLGEALNLNIQRCKYVKPTPVQRNAIPILAAGRDLMACAQTGSGKTAAFCFPIISG 207
Query: 384 LLVPNNKPTP----GKNLRALILSPTRELALQTLRFVRELGKFTGLTSAAILGGESIEQQ 551
++ + P G A+ILSPTRELA Q R+ TG+ GG + QQ
Sbjct: 208 IMKDQHIERPRGVRGVYPLAVILSPTRELACQIHDEARKFSYQTGVKVVVAYGGTPVNQQ 267
Query: 552 FNVMSGSSPDIVVATPGRFLHICIEMCLKLDNIKIVVFDEADRLFELGFGEQLQEICARL 731
+ DI+VATPGR + + L ++ + DEADR+ ++GF Q+++I ++
Sbjct: 268 IRELE-RGVDILVATPGRLNDLLERGRVSLQMVRFLALDEADRMLDMGFEPQIRKIVQQM 326
Query: 732 ----PSSRQTLLFSATLPKMLVXFARAGLS 809
P RQT+LFSAT P+ + A LS
Sbjct: 327 DMPPPGVRQTMLFSATFPREIQRLASDFLS 356
>At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative
non-consensus acceptor splice site AT at exon 2; similar
to DEAD box helicase protein GB:NP_006764 from [Homo
sapiens], contains Pfam profile: PF00270 DEAD/DEAH box
helicase
Length = 568
Score = 126 bits (304), Expect = 2e-29
Identities = 78/204 (38%), Positives = 111/204 (54%), Gaps = 2/204 (0%)
Frame = +3
Query: 204 FQSMGLSFPVLKGITKRGYKQPTPIQRKTIPIALTGKDVVAMARTGSGKTACFVLPILEK 383
F S+ LS I + G++ T IQ +I L GKDV+ ARTGSGKT F++P +E
Sbjct: 91 FDSLDLSEQTSIAIKEMGFQYMTQIQAGSIQPLLEGKDVLGAARTGSGKTLAFLIPAVEL 150
Query: 384 LLVPNNKPTPGKNLRALILSPTRELALQTLRFVRELGKFTGLTSAAILGGESIEQQF-NV 560
L P G + +++ PTRELA+QT EL K T + ++GG + + +
Sbjct: 151 LFKERFSPRNGTGV--IVICPTRELAIQTKNVAEELLKHHSQTVSMVIGGNNRRSEAQRI 208
Query: 561 MSGSSPDIVVATPGRFL-HICIEMCLKLDNIKIVVFDEADRLFELGFGEQLQEICARLPS 737
SGS ++V+ATPGR L H+ ++K +V DEADR+ E F E + +I LP
Sbjct: 209 ASGS--NLVIATPGRLLDHLQNTKAFIYKHLKCLVIDEADRILEENFEEDMNKILKILPK 266
Query: 738 SRQTLLFSATLPKMLVXFARAGLS 809
+RQT LFSAT + AR L+
Sbjct: 267 TRQTALFSATQTSKVKDLARVSLT 290
>At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong
similarity to RNA helicase RH25 [Arabidopsis thaliana]
GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH31
GI:3776030
Length = 522
Score = 125 bits (302), Expect = 3e-29
Identities = 78/199 (39%), Positives = 111/199 (55%), Gaps = 8/199 (4%)
Frame = +3
Query: 204 FQSMGLSFPVLKGITKRGYKQPTPIQRKTIPIALTGKDVVAMARTGSGKTACFVLPILEK 383
F LS LK I GY+ T +Q T+PI L GKDV+A A+TG+GKT F+LP +E
Sbjct: 56 FDHYPLSPLSLKAIKDAGYETMTVVQEATLPIILKGKDVLAKAKTGTGKTVAFLLPSIE- 114
Query: 384 LLVPNNKPTPGKNLR----ALILSPTRELALQTLRFVRELGKF-TGLTSAAILGGESIEQ 548
+V + PT N R AL++ PTRELA Q L K+ + ++GG +
Sbjct: 115 -VVVKSPPTSPDNKRPPILALVICPTRELANQAATEANTLLKYHPSIGVQVVIGGTRLGL 173
Query: 549 QFNVMSGSSPDIVVATPGRFL-HI--CIEMCLKLDNIKIVVFDEADRLFELGFGEQLQEI 719
+ M + I+VATPGR HI +L +K++V DEAD L ++GF + ++ I
Sbjct: 174 EQKRMQTNPCQILVATPGRLKDHIENTPGFATRLKGVKVLVLDEADHLLDMGFRKDIERI 233
Query: 720 CARLPSSRQTLLFSATLPK 776
+ +P RQT LFSAT+P+
Sbjct: 234 ISAVPKERQTFLFSATVPE 252
>At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to
SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 733
Score = 125 bits (302), Expect = 3e-29
Identities = 68/183 (37%), Positives = 107/183 (58%), Gaps = 3/183 (1%)
Frame = +3
Query: 201 AFQSMGLSFPVLKGITKRGYKQPTPIQRKTIPIALTGKDVVAMARTGSGKTACFVLPILE 380
+++ L+ +LK + + GYK+P+PIQ IP+ L +DV+ +A TGSGKTA FVLP+L
Sbjct: 314 SWEESKLTSELLKAVERAGYKKPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLA 373
Query: 381 KL--LVPNNKPTPGKNLRALILSPTRELALQTLRFVRELGKFTGLTSAAILGGESIEQQ- 551
+ L P ++ + A++++PTRELA Q + + G +I+GG+SIE+Q
Sbjct: 374 YISRLPPMSEENETEGPYAVVMAPTRELAQQIEEETVKFAHYLGFRVTSIVGGQSIEEQG 433
Query: 552 FNVMSGSSPDIVVATPGRFLHICIEMCLKLDNIKIVVFDEADRLFELGFGEQLQEICARL 731
+ G +IV+ATPGR + L+ VV DEADR+ ++GF Q+ + +
Sbjct: 434 LKITQGC--EIVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVAGVLDAM 491
Query: 732 PSS 740
PSS
Sbjct: 492 PSS 494
>At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 465
Score = 125 bits (302), Expect = 3e-29
Identities = 70/197 (35%), Positives = 112/197 (56%), Gaps = 1/197 (0%)
Frame = +3
Query: 219 LSFPVLKGITKRGYKQPTPIQRKTIPIALTGKDVVAMARTGSGKTACFVLPILEKLLVPN 398
LS +++ + + G++ TP+Q +TIP + KDVV A TGSGKT F+LP +E + N
Sbjct: 24 LSEDIIEALDRSGFEVCTPVQAETIPFLCSHKDVVVDAATGSGKTLAFLLPFIEIIRRSN 83
Query: 399 NKPTPGKNLRALILSPTRELALQTLRFVRELGKFTGLTSAAILGGESIEQQFNVMSGSSP 578
+ P + +I+SPTREL+ Q + ++ + L A +E N +
Sbjct: 84 SYPPKPHQVMGVIISPTRELSAQ----IHKVARAVRLDFAKC---REVEADMNTLEEEGA 136
Query: 579 DIVVATPGRFLHICIEM-CLKLDNIKIVVFDEADRLFELGFGEQLQEICARLPSSRQTLL 755
++++ TPGR + M L N++I++ DEADRL ++GF +Q+ I +RLP R+T L
Sbjct: 137 NLLIGTPGRLSDMMKRMEFLDFRNLEILILDEADRLLDMGFQKQVNYIISRLPKQRRTGL 196
Query: 756 FSATLPKMLVXFARAGL 806
FSAT + + A+AGL
Sbjct: 197 FSATQTQAVADLAKAGL 213
>At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical to
RNA helicase [Arabidopsis thaliana] GI:3776023; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 563
Score = 124 bits (299), Expect = 7e-29
Identities = 73/199 (36%), Positives = 109/199 (54%), Gaps = 6/199 (3%)
Frame = +3
Query: 192 SSGAFQSMGLSFPVLKGITKRGYKQPTPIQRKTIPIALTGKDVVAMARTGSGKTACFVLP 371
S F LS LKGI G+K T +Q T+P+ L GKD++A A+TG+GKT F+LP
Sbjct: 78 SKTRFDQFPLSPLTLKGIEDAGFKTMTVVQEATLPLILQGKDILAKAKTGTGKTVAFLLP 137
Query: 372 ILEKLL--VPNNKPTPGKNLRALILSPTRELALQTLRFVRELGKF-TGLTSAAILGGESI 542
+E ++ P ++ + L++ PTRELA Q L K+ + ++GG +
Sbjct: 138 SIEAVIKAPPASRDNRHPPIIVLVVCPTRELACQAAAEANILLKYHPSIGVQVVIGGTKL 197
Query: 543 EQQFNVMSGSSPDIVVATPGRFL-HI--CIEMCLKLDNIKIVVFDEADRLFELGFGEQLQ 713
+ + S I+VATPGR HI +L +K++V DEAD L ++GF +++
Sbjct: 198 PTEQRRLQKSPCQILVATPGRLKDHIDNTSGFATRLMGVKVLVLDEADHLLDMGFRREIE 257
Query: 714 EICARLPSSRQTLLFSATL 770
I A +P RQT LFSAT+
Sbjct: 258 RIIAAVPKQRQTFLFSATV 276
>At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong
similarity to RNA helicase RH26 [Arabidopsis thaliana]
GI:3776025; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH26
GI:3776024
Length = 850
Score = 124 bits (299), Expect = 7e-29
Identities = 74/201 (36%), Positives = 110/201 (54%), Gaps = 6/201 (2%)
Frame = +3
Query: 192 SSGAFQSMGLSFPVLKGITKRGYKQPTPIQRKTIPIALTGKDVVAMARTGSGKTACFVLP 371
S F LS LK I G++ T +Q T+PI L GKDV+A A+TG+GKT F+LP
Sbjct: 380 SKTRFDQFPLSPLSLKAIKDAGFETMTVVQEATLPIILQGKDVLAKAKTGTGKTVAFLLP 439
Query: 372 ILEKLL--VPNNKPTPGKNLRALILSPTRELALQTLRFVRELGKF-TGLTSAAILGGESI 542
+E ++ P ++ + + L++ PTRELA Q L K+ + ++GG +
Sbjct: 440 AIEAVIKSPPASRDSRQPPIIVLVVCPTRELASQAAAEANTLLKYHPSIGVQVVIGGTKL 499
Query: 543 EQQFNVMSGSSPDIVVATPGRFL-HI--CIEMCLKLDNIKIVVFDEADRLFELGFGEQLQ 713
+ M + I+VATPGR HI +L +K++V DEAD L ++GF ++
Sbjct: 500 PTEQRRMQTNPCQILVATPGRLKDHIENTSGFATRLMGVKVLVLDEADHLLDMGFRRDIE 559
Query: 714 EICARLPSSRQTLLFSATLPK 776
I A +P RQT LFSAT+P+
Sbjct: 560 RIIAAVPKQRQTFLFSATVPE 580
>At3g13920.1 68416.m01758 eukaryotic translation initiation factor
4A-1 / eIF-4A-1 eIF-4A-1 gi:15293046, gi:15450485;
contains Pfam profile PF00270: DEAD/DEAH box helicase;
contains Pfam profile PF00271: Helicase conserved
C-terminal domain
Length = 412
Score = 124 bits (299), Expect = 7e-29
Identities = 72/203 (35%), Positives = 115/203 (56%)
Frame = +3
Query: 201 AFQSMGLSFPVLKGITKRGYKQPTPIQRKTIPIALTGKDVVAMARTGSGKTACFVLPILE 380
+F +MGL +L+GI G+++P+ IQ++ I G DV+ A++G+GKTA F +L+
Sbjct: 40 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQ 99
Query: 381 KLLVPNNKPTPGKNLRALILSPTRELALQTLRFVRELGKFTGLTSAAILGGESIEQQFNV 560
+L + +AL+L+PTRELA Q + +R LG + G+ A +GG S+ + +
Sbjct: 100 QLDFSLIQ------CQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRI 153
Query: 561 MSGSSPDIVVATPGRFLHICIEMCLKLDNIKIVVFDEADRLFELGFGEQLQEICARLPSS 740
+ + +VV TPGR + L+ DNIK+ V DEAD + GF +Q+ +I LP
Sbjct: 154 LQ-AGVHVVVGTPGRVFDMLKRQSLRADNIKMFVLDEADEMLSRGFKDQIYDIFQLLPPK 212
Query: 741 RQTLLFSATLPKMLVXFARAGLS 809
Q +FSAT+P + R +S
Sbjct: 213 IQVGVFSATMPPEALEITRKFMS 235
>At1g72730.1 68414.m08410 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative similar to Eukaryotic
initiation factor 4A-10 GB:P41382 [Nicotiana tabacum];
identical to (putative) RNA helicase GB:CAA09211
[Arabidopsis thaliana] (Nucleic Acids Res. 27 (2),
628-636 (1999))
Length = 414
Score = 124 bits (298), Expect = 9e-29
Identities = 72/199 (36%), Positives = 114/199 (57%)
Frame = +3
Query: 201 AFQSMGLSFPVLKGITKRGYKQPTPIQRKTIPIALTGKDVVAMARTGSGKTACFVLPILE 380
+F +M L +L+GI G+++P+ IQ++ I G DV+ A++G+GKTA F +L+
Sbjct: 42 SFDAMELQPDLLRGIYAYGFEKPSAIQQRGIIPFCKGLDVIQQAQSGTGKTATFCSGVLQ 101
Query: 381 KLLVPNNKPTPGKNLRALILSPTRELALQTLRFVRELGKFTGLTSAAILGGESIEQQFNV 560
+L + + +AL+L+PTRELA Q + +R LG + G+ + A +GG S+ + V
Sbjct: 102 QLDISLVQ------CQALVLAPTRELAQQIEKVMRALGDYLGVKAQACVGGTSVREDQRV 155
Query: 561 MSGSSPDIVVATPGRFLHICIEMCLKLDNIKIVVFDEADRLFELGFGEQLQEICARLPSS 740
+ S +VV TPGR + L+ D IK+ V DEAD + GF +Q+ +I LPS
Sbjct: 156 LQ-SGVHVVVGTPGRVFDLLRRQSLRADAIKMFVLDEADEMLSRGFKDQIYDIFQLLPSK 214
Query: 741 RQTLLFSATLPKMLVXFAR 797
Q +FSAT+P + R
Sbjct: 215 VQVGVFSATMPPEALEITR 233
>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 713
Score = 123 bits (296), Expect = 2e-28
Identities = 68/174 (39%), Positives = 103/174 (59%)
Frame = +3
Query: 255 GYKQPTPIQRKTIPIALTGKDVVAMARTGSGKTACFVLPILEKLLVPNNKPTPGKNLRAL 434
G+ P+PIQ ++ PIA+ +D+VA+A+TGSGKT +++P L +N G + L
Sbjct: 248 GFSAPSPIQAQSWPIAMQNRDIVAIAKTGSGKTLGYLIPGFMHLQRIHNDSRMGPTI--L 305
Query: 435 ILSPTRELALQTLRFVRELGKFTGLTSAAILGGESIEQQFNVMSGSSPDIVVATPGRFLH 614
+LSPTRELA Q + GK + ++ A + GG Q + DIVVATPGR
Sbjct: 306 VLSPTRELATQIQVEALKFGKSSKISCACLYGGAPKGPQLKEIE-RGVDIVVATPGRLND 364
Query: 615 ICIEMCLKLDNIKIVVFDEADRLFELGFGEQLQEICARLPSSRQTLLFSATLPK 776
I + L + +V DEADR+ ++GF Q+++I +P+ RQTL+++AT PK
Sbjct: 365 ILEMKRISLHQVSYLVLDEADRMLDMGFEPQIRKIVNEVPTKRQTLMYTATWPK 418
>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 633
Score = 123 bits (296), Expect = 2e-28
Identities = 75/205 (36%), Positives = 112/205 (54%), Gaps = 8/205 (3%)
Frame = +3
Query: 204 FQSMGLSFPVLKGITKRGYKQPTPIQRKTIPIALTGKDVVAMARTGSGKTACFVLPILEK 383
F + L + I + Y +PTP+QR IPI L G+D++A A+TGSGKTA F PI+
Sbjct: 161 FAEIDLGEALNLNIRRCKYVKPTPVQRHAIPILLEGRDLMACAQTGSGKTAAFCFPIISG 220
Query: 384 LLVPNN--KPTPGKNL--RALILSPTRELALQTLRFVRELGKFTGLTSAAILGGESIEQQ 551
++ + +P + + A+ILSPTRELA Q ++ TG+ GG I QQ
Sbjct: 221 IMKDQHVQRPRGSRTVYPLAVILSPTRELASQIHDEAKKFSYQTGVKVVVAYGGTPINQQ 280
Query: 552 FNVMSGSSPDIVVATPGRFLHICIEMCLKLDNIKIVVFDEADRLFELGFGEQLQEICARL 731
+ DI+VATPGR + + + I+ + DEADR+ ++GF Q+++I ++
Sbjct: 281 LRELE-RGVDILVATPGRLNDLLERARVSMQMIRFLALDEADRMLDMGFEPQIRKIVEQM 339
Query: 732 P----SSRQTLLFSATLPKMLVXFA 794
RQTLLFSAT P+ + A
Sbjct: 340 DMPPRGVRQTLLFSATFPREIQRLA 364
>At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20)
similar to ethylene-responsive RNA helicase GI:5669638
from [Lycopersicon esculentum]; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 501
Score = 122 bits (294), Expect = 3e-28
Identities = 68/194 (35%), Positives = 111/194 (57%), Gaps = 2/194 (1%)
Frame = +3
Query: 201 AFQSMGLSFPVLKGITKRGYKQPTPIQRKTIPIALTGKDVVAMARTGSGKTACFVLPILE 380
+F+ +G VL+ + K G+ +PTPIQ + P+A+ G+D++ +A TGSGKT ++LP +
Sbjct: 100 SFRDVGFPDYVLEEVKKAGFTEPTPIQSQGWPMAMKGRDLIGIAETGSGKTLSYLLPAIV 159
Query: 381 KLLVPNNKP--TPGKNLRALILSPTRELALQTLRFVRELGKFTGLTSAAILGGESIEQQF 554
+ N +P G L+L+PTRELA+Q + + G + + + I GG Q
Sbjct: 160 HV---NAQPMLAHGDGPIVLVLAPTRELAVQIQQEASKFGSSSKIKTTCIYGGVPKGPQV 216
Query: 555 NVMSGSSPDIVVATPGRFLHICIEMCLKLDNIKIVVFDEADRLFELGFGEQLQEICARLP 734
+ +IV+ATPGR + + L + +V DEADR+ ++GF Q+++I + +
Sbjct: 217 RDLQ-KGVEIVIATPGRLIDMMESNNTNLRRVTYLVLDEADRMLDMGFDPQIRKIVSHIR 275
Query: 735 SSRQTLLFSATLPK 776
RQTL +SAT PK
Sbjct: 276 PDRQTLYWSATWPK 289
>At3g19760.1 68416.m02501 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative / DEAD box RNA helicase,
putative contains DEAD/DEAH helicase domain; similar to
RNA helicase GB:CAA09195 from [Arabidopsis thaliana];
identical to cDNA DEAD box RNA helicase, RH2 GI:3775984
Length = 408
Score = 121 bits (292), Expect = 5e-28
Identities = 63/191 (32%), Positives = 109/191 (57%)
Frame = +3
Query: 201 AFQSMGLSFPVLKGITKRGYKQPTPIQRKTIPIALTGKDVVAMARTGSGKTACFVLPILE 380
+F MG+ VL+G+ + G+++P+ IQ++ + L G+DV+A A++G+GKT+ L + +
Sbjct: 36 SFNDMGIKEDVLRGVYEYGFEKPSAIQQRAVMPILQGRDVIAQAQSGTGKTSMIALSVCQ 95
Query: 381 KLLVPNNKPTPGKNLRALILSPTRELALQTLRFVRELGKFTGLTSAAILGGESIEQQFNV 560
+ T + ++ALILSPTRELA QT + ++ +G + + A +GG S+ +
Sbjct: 96 VV------DTSSREVQALILSPTRELATQTEKTIQAIGLHANIQAHACIGGNSVGEDIRK 149
Query: 561 MSGSSPDIVVATPGRFLHICIEMCLKLDNIKIVVFDEADRLFELGFGEQLQEICARLPSS 740
+ +V TPGR + L+ IK+++ DE+D + GF +Q+ ++ LP
Sbjct: 150 LE-HGVHVVSGTPGRVCDMIKRRSLRTRAIKLLILDESDEMLSRGFKDQIYDVYRYLPPD 208
Query: 741 RQTLLFSATLP 773
Q L SATLP
Sbjct: 209 LQVCLVSATLP 219
>At1g54270.1 68414.m06187 eukaryotic translation initiation factor
4A-2 / eIF-4A-2 similar to eukaryotic translation
initiation factor 4A GI:19696 from [Nicotiana
plumbaginifolia]
Length = 412
Score = 120 bits (289), Expect = 1e-27
Identities = 71/203 (34%), Positives = 113/203 (55%)
Frame = +3
Query: 201 AFQSMGLSFPVLKGITKRGYKQPTPIQRKTIPIALTGKDVVAMARTGSGKTACFVLPILE 380
+F +MGL +L+GI G+++P+ IQ++ I G DV+ A++G+GKTA F +L+
Sbjct: 40 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQ 99
Query: 381 KLLVPNNKPTPGKNLRALILSPTRELALQTLRFVRELGKFTGLTSAAILGGESIEQQFNV 560
+L +AL+L+PTRELA Q + +R LG + G+ A +GG S+ + +
Sbjct: 100 QL------DYALLQCQALVLAPTRELAQQIEKVMRALGDYQGVKVHACVGGTSVREDQRI 153
Query: 561 MSGSSPDIVVATPGRFLHICIEMCLKLDNIKIVVFDEADRLFELGFGEQLQEICARLPSS 740
+ + +VV TPGR + L+ D IK+ V DEAD + GF +Q+ +I LP
Sbjct: 154 LQ-AGVHVVVGTPGRVFDMLRRQSLRPDCIKMFVLDEADEMLSRGFKDQIYDIFQLLPPK 212
Query: 741 RQTLLFSATLPKMLVXFARAGLS 809
Q +FSAT+P + R +S
Sbjct: 213 IQVGVFSATMPPEALEITRKFMS 235
>At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 119 bits (287), Expect = 2e-27
Identities = 73/205 (35%), Positives = 108/205 (52%), Gaps = 8/205 (3%)
Frame = +3
Query: 204 FQSMGLSFPVLKGITKRGYKQPTPIQRKTIPIALTGKDVVAMARTGSGKTACFVLPILEK 383
F + L + I + Y +PTP+QR IPI L +D++A A+TGSGKTA F PI+
Sbjct: 153 FADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMACAQTGSGKTAAFCFPIISG 212
Query: 384 LLVPNNKPTPGKNLR----ALILSPTRELALQTLRFVRELGKFTGLTSAAILGGESIEQQ 551
++ + P + A+ILSPTRELA Q ++ TG+ GG I QQ
Sbjct: 213 IMKDQHVERPRGSRAVYPFAVILSPTRELACQIHDEAKKFSYQTGVKVVVAYGGTPIHQQ 272
Query: 552 FNVMSGSSPDIVVATPGRFLHICIEMCLKLDNIKIVVFDEADRLFELGFGEQLQEICARL 731
+ DI+VATPGR + + + I+ + DEADR+ ++GF Q+++I ++
Sbjct: 273 LRELERGC-DILVATPGRLNDLLERARVSMQMIRFLALDEADRMLDMGFEPQIRKIVEQM 331
Query: 732 P----SSRQTLLFSATLPKMLVXFA 794
RQT+LFSAT P + A
Sbjct: 332 DMPPRGVRQTMLFSATFPSQIQRLA 356
>At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 119 bits (287), Expect = 2e-27
Identities = 73/205 (35%), Positives = 108/205 (52%), Gaps = 8/205 (3%)
Frame = +3
Query: 204 FQSMGLSFPVLKGITKRGYKQPTPIQRKTIPIALTGKDVVAMARTGSGKTACFVLPILEK 383
F + L + I + Y +PTP+QR IPI L +D++A A+TGSGKTA F PI+
Sbjct: 153 FADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMACAQTGSGKTAAFCFPIISG 212
Query: 384 LLVPNNKPTPGKNLR----ALILSPTRELALQTLRFVRELGKFTGLTSAAILGGESIEQQ 551
++ + P + A+ILSPTRELA Q ++ TG+ GG I QQ
Sbjct: 213 IMKDQHVERPRGSRAVYPFAVILSPTRELACQIHDEAKKFSYQTGVKVVVAYGGTPIHQQ 272
Query: 552 FNVMSGSSPDIVVATPGRFLHICIEMCLKLDNIKIVVFDEADRLFELGFGEQLQEICARL 731
+ DI+VATPGR + + + I+ + DEADR+ ++GF Q+++I ++
Sbjct: 273 LRELERGC-DILVATPGRLNDLLERARVSMQMIRFLALDEADRMLDMGFEPQIRKIVEQM 331
Query: 732 P----SSRQTLLFSATLPKMLVXFA 794
RQT+LFSAT P + A
Sbjct: 332 DMPPRGVRQTMLFSATFPSQIQRLA 356
>At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative
Length = 427
Score = 118 bits (284), Expect = 5e-27
Identities = 71/196 (36%), Positives = 107/196 (54%), Gaps = 2/196 (1%)
Frame = +3
Query: 195 SGAFQSMGLSFPVLKGITKRGYKQPTPIQRKTIPIALTGKDVVAMARTGSGKTACFVLPI 374
S F+ L +L+ I G++ P+ +Q + IP A+ G DV+ A++G GKTA FVL
Sbjct: 45 SSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLST 104
Query: 375 LEKLLVPNNKPTPGKNLRALILSPTRELALQTL-RFVRELGKFTGLTSAAILGGESIEQQ 551
L+++ +P+PG+ + AL+L TRELA Q FVR + GG +I+
Sbjct: 105 LQQI-----EPSPGQ-VSALVLCHTRELAYQICNEFVRFSTYLPDTKVSVFYGGVNIKIH 158
Query: 552 FNVMSGSSPDIVVATPGRFLHICIEMCLKLDNIKIVVFDEADRLFE-LGFGEQLQEICAR 728
+++ P IVV TPGR L + E L L N++ + DE D++ E L +QEI
Sbjct: 159 KDLLKNECPHIVVGTPGRVLALAREKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKM 218
Query: 729 LPSSRQTLLFSATLPK 776
P +Q ++FSATL K
Sbjct: 219 TPHDKQVMMFSATLSK 234
>At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 427
Score = 118 bits (284), Expect = 5e-27
Identities = 71/196 (36%), Positives = 107/196 (54%), Gaps = 2/196 (1%)
Frame = +3
Query: 195 SGAFQSMGLSFPVLKGITKRGYKQPTPIQRKTIPIALTGKDVVAMARTGSGKTACFVLPI 374
S F+ L +L+ I G++ P+ +Q + IP A+ G DV+ A++G GKTA FVL
Sbjct: 45 SSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLST 104
Query: 375 LEKLLVPNNKPTPGKNLRALILSPTRELALQTL-RFVRELGKFTGLTSAAILGGESIEQQ 551
L+++ +P+PG+ + AL+L TRELA Q FVR + GG +I+
Sbjct: 105 LQQI-----EPSPGQ-VSALVLCHTRELAYQICNEFVRFSTYLPDTKVSVFYGGVNIKIH 158
Query: 552 FNVMSGSSPDIVVATPGRFLHICIEMCLKLDNIKIVVFDEADRLFE-LGFGEQLQEICAR 728
+++ P IVV TPGR L + E L L N++ + DE D++ E L +QEI
Sbjct: 159 KDLLKNECPHIVVGTPGRVLALAREKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKM 218
Query: 729 LPSSRQTLLFSATLPK 776
P +Q ++FSATL K
Sbjct: 219 TPHDKQVMMFSATLSK 234
>At1g51380.1 68414.m05780 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative
Length = 392
Score = 118 bits (284), Expect = 5e-27
Identities = 62/195 (31%), Positives = 112/195 (57%)
Frame = +3
Query: 201 AFQSMGLSFPVLKGITKRGYKQPTPIQRKTIPIALTGKDVVAMARTGSGKTACFVLPILE 380
+F MG++ VL+G+ GYK+P+ IQ++ + L G+DV+A A++G+GKT+ + + +
Sbjct: 23 SFDDMGMNDKVLRGVYDYGYKKPSEIQQRALVPILKGRDVIAQAQSGTGKTSMIAISVCQ 82
Query: 381 KLLVPNNKPTPGKNLRALILSPTRELALQTLRFVRELGKFTGLTSAAILGGESIEQQFNV 560
+ + + K ++ L+LSP+RELA QT + ++ +G T + + A +GG+SI +
Sbjct: 83 IVNISSRK------VQVLVLSPSRELASQTEKTIQAIGAHTNIQAHACIGGKSIGEDIKK 136
Query: 561 MSGSSPDIVVATPGRFLHICIEMCLKLDNIKIVVFDEADRLFELGFGEQLQEICARLPSS 740
+ V TPGR + L+ +K++V DE+D + G +Q+ ++ LP
Sbjct: 137 LE-RGVHAVSGTPGRVYDMIKRGSLQTKAVKLLVLDESDEMLSKGLKDQIYDVYRALPHD 195
Query: 741 RQTLLFSATLPKMLV 785
Q L SATLP+ ++
Sbjct: 196 IQVCLISATLPQEIL 210
>At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:1488521; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 671
Score = 113 bits (271), Expect = 2e-25
Identities = 75/197 (38%), Positives = 98/197 (49%), Gaps = 6/197 (3%)
Frame = +3
Query: 201 AFQSMGLSFPVLKGITKRGYKQPTPIQRKTIPIALTGKDVVAMARTGSGKTACFVLPILE 380
A +S P+ + + G + PIQ T + L G D+V ARTG GKT FVLPILE
Sbjct: 97 AVSKFRISAPLREKLKANGIEALFPIQASTFDMVLDGADLVGRARTGQGKTLAFVLPILE 156
Query: 381 KLL----VPNNKPTPGKNLRALILSPTRELALQTLRFVRELGKFTGLTSAAILGGESIEQ 548
L+ K G++ L+L PTRELA Q G GL+S + GG+S
Sbjct: 157 SLVNGPAKSKRKMGYGRSPSVLVLLPTRELAKQVAADFDAYGGSLGLSSCCLYGGDSYPV 216
Query: 549 QFNVMSGSSPDIVVATPGRFLHICIEMCLKLDNIKIVVFDEADRLFELGFGEQLQEICAR 728
Q + DIVV TPGR L ++ V DEAD + +GF E ++ I +
Sbjct: 217 QEGKLK-RGVDIVVGTPGRIKDHIERQNLDFSYLQFRVLDEADEMLRMGFVEDVELILGK 275
Query: 729 LPSSR--QTLLFSATLP 773
+ S QTLLFSATLP
Sbjct: 276 VEDSTKVQTLLFSATLP 292
>At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)
identical to cDNA DEAD box RNA helicase, RH16 GI:3776006
Length = 626
Score = 110 bits (264), Expect = 1e-24
Identities = 68/195 (34%), Positives = 106/195 (54%), Gaps = 6/195 (3%)
Frame = +3
Query: 201 AFQSMGLSFPVLKGITKRGYKQPTPIQRKTIPIALTGKDVVAMARTGSGKTACFVLPILE 380
+F+ +GL +++ +TK+G ++PT IQ+ IP L GKDVVA A+TGSGKT ++LP+L+
Sbjct: 47 SFEELGLDSRLIRALTKKGIEKPTLIQQSAIPYILEGKDVVARAKTGSGKTLAYLLPLLQ 106
Query: 381 KLLVPNNKPTPGKNLRALILSPTRELALQTLRFVRELGKF--TGLTSAAILGGESIEQQF 554
KL ++ A IL P+REL Q V L + L + + S
Sbjct: 107 KLFSADSVSKKKLAPSAFILVPSRELCQQVYTEVSSLIELCRVQLKAVQLTSSMSASDMR 166
Query: 555 NVMSGSSPDIVVATPG----RFLHICIEMCLKLDNIKIVVFDEADRLFELGFGEQLQEIC 722
N ++G P+I+V+TP F +E +++ I+V DEAD L G+ + L+ +
Sbjct: 167 NALAG-LPEILVSTPACIPKCFAAGVLEPTAVSESLSILVLDEADLLLSYGYEDNLRSVT 225
Query: 723 ARLPSSRQTLLFSAT 767
+ +P Q LL SAT
Sbjct: 226 SIIPRRCQCLLMSAT 240
>At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar to
RNA helicase (RH25) [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 798
Score = 110 bits (264), Expect = 1e-24
Identities = 76/203 (37%), Positives = 110/203 (54%), Gaps = 8/203 (3%)
Frame = +3
Query: 192 SSGAFQSMGLSFPVLKGITKRGYKQPTPIQRKTIPIALTGKDVVAMARTGSGKTACFVLP 371
S+ F +S LK ++ G + T +Q T+ L GKD + A+TG+GK+ F+LP
Sbjct: 326 SAKRFDESCISPLTLKALSASGILKMTRVQDATLSECLDGKDALVKAKTGTGKSMAFLLP 385
Query: 372 ILEKLLVPNNKPTPGKN----LRALILSPTRELALQTLRFVRELGKF-TGLTSAAILGGE 536
+E +L N G N + ALIL PTRELA Q + L KF G+ ++GG
Sbjct: 386 AIETVLKAMNSGK-GVNKVAPIFALILCPTRELASQIAAEGKALLKFHDGIGVQTLIGGT 444
Query: 537 SIEQQFNVMSGSSPDIVVATPGRFL-HICIEMCL--KLDNIKIVVFDEADRLFELGFGEQ 707
+ + I++ATPGR L HI + L +L +K+ + DEAD L +LGF
Sbjct: 445 RFKLDQQRLESEPCQILIATPGRLLDHIENKSGLTSRLMALKLFIVDEADLLLDLGFRRD 504
Query: 708 LQEICARLPSSRQTLLFSATLPK 776
+++I LP RQ+LLFSAT+PK
Sbjct: 505 VEKIIDCLPRQRQSLLFSATIPK 527
>At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 368
Score = 108 bits (259), Expect = 5e-24
Identities = 62/167 (37%), Positives = 102/167 (61%), Gaps = 3/167 (1%)
Frame = +3
Query: 285 KTIPIALTGKDVVAMARTGSGKTACFVLPILEKLLVPNNK-PT-PGKNLRALILSPTREL 458
+ IP ALTGK ++A A TGSGKTA F++PI+ + +++ P+ +N A++L+PTREL
Sbjct: 2 QAIPAALTGKSLLASADTGSGKTASFLVPIISRCTTYHSEHPSDQRRNPLAMVLAPTREL 61
Query: 459 ALQTLRFVRELGKFTGLTSAAILGGESIE-QQFNVMSGSSPDIVVATPGRFLHICIEMCL 635
+Q + LGK +A ++GG+ + Q + + G ++++ TPGR + + + +
Sbjct: 62 CVQVEDQAKMLGKGLPFKTALVVGGDPMSGQLYRIQQG--VELIIGTPGRVVDLLSKHTI 119
Query: 636 KLDNIKIVVFDEADRLFELGFGEQLQEICARLPSSRQTLLFSATLPK 776
+LDNI V DE D + + GF +Q+ +I L S Q LLFSAT+ +
Sbjct: 120 ELDNIMTFVLDEVDCMLQRGFRDQVMQIFQAL-SQPQVLLFSATISR 165
>At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)
identical to GB:CAA09207, contains a DEAD/DEAH box
family ATP-dependent helicas signature; identical to
cDNA DEAD box RNA helicase, RH17 GI:3776008
Length = 609
Score = 108 bits (259), Expect = 5e-24
Identities = 63/188 (33%), Positives = 109/188 (57%), Gaps = 4/188 (2%)
Frame = +3
Query: 192 SSGAFQSMGLSFPVLKGITKR-GYKQPTPIQRKTIPIALTGKDVVAMARTGSGKTACFVL 368
+S +F S+GL + + +R G++ PT +Q + IP+ L+G+DV+ A TG+GKT ++
Sbjct: 27 ASCSFSSLGLDTKLSDQLKERMGFEAPTLVQAQAIPVILSGRDVLVNAPTGTGKTIAYLA 86
Query: 369 PILEKLLVPNNKPTPGKNLRALILSPTRELALQTLRFVRE-LGKFTGLTSAAILGGE-SI 542
P++ L + K AL++ PTREL LQ + + L +F + ++GGE
Sbjct: 87 PLIHHLQGHSPKVDRSHGTFALVIVPTRELCLQVYETLEKLLHRFHWIVPGYVMGGEKKA 146
Query: 543 EQQFNVMSGSSPDIVVATPGRFL-HICIEMCLKLDNIKIVVFDEADRLFELGFGEQLQEI 719
+++ + G S I++ATPGR L H+ N++ V+FDEAD + ELG+G+++++I
Sbjct: 147 KEKARLRKGIS--ILIATPGRLLDHLKNTASFVHKNLRWVIFDEADSILELGYGKEIEQI 204
Query: 720 CARLPSSR 743
L S +
Sbjct: 205 IKLLGSGQ 212
>At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar to
RNA helicase RH25 [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 845
Score = 104 bits (250), Expect = 6e-23
Identities = 72/202 (35%), Positives = 105/202 (51%), Gaps = 7/202 (3%)
Frame = +3
Query: 192 SSGAFQSMGLSFPVLKGITKRGYKQPTPIQRKTIPIALTGKDVVAMARTGSGKTACFVLP 371
S+ F +S LK ++ G + T +Q T+ L GKD + A+TG+GK+ F+LP
Sbjct: 373 SAKRFDESCISPLTLKALSASGIVKMTRVQDATLSECLDGKDALVKAKTGTGKSMAFLLP 432
Query: 372 ILEKLLVPNNKPTPGKNLR---ALILSPTRELALQTLRFVRELGK-FTGLTSAAILGGES 539
+E +L N + LIL PTRELA Q + L K G+ ++GG
Sbjct: 433 AIETVLKAMNSGKGVHKVAPIFVLILCPTRELASQIAAEGKALLKNHDGIGVQTLIGGTR 492
Query: 540 IEQQFNVMSGSSPDIVVATPGRFL-HICIEMCL--KLDNIKIVVFDEADRLFELGFGEQL 710
+ I++ATPGR L HI + L +L +K+ + DEAD L +LGF +
Sbjct: 493 FRLDQQRLESEPCQILIATPGRLLDHIENKSGLTSRLMALKLFIVDEADLLLDLGFKRDV 552
Query: 711 QEICARLPSSRQTLLFSATLPK 776
++I LP RQ+LLFSAT+PK
Sbjct: 553 EKIIDCLPRQRQSLLFSATIPK 574
>At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)
similar to RNA helicase GB:CAA09204 from [Arabidopsis
thaliana]; identical to cDNA DEAD box RNA helicase, RH13
GI:3776002
Length = 832
Score = 103 bits (247), Expect = 1e-22
Identities = 74/196 (37%), Positives = 102/196 (52%), Gaps = 18/196 (9%)
Frame = +3
Query: 201 AFQSMGLSFPVLKGITKRGYKQPTPIQRKTIPIAL-TGKDVVAMARTGSGKTACFVLPIL 377
A+ SM L ++K I + +K+PT IQ+ +A GKDV+ A TGSGKT F LPIL
Sbjct: 191 AWSSMRLHPLLMKSIYRLDFKEPTKIQKACFNVAAYQGKDVIGAAETGSGKTLAFGLPIL 250
Query: 378 EKLLVPNNK-----PTPGKN---------LRALILSPTRELALQTLRFVRELGKFTGLTS 515
++LL K G+ LRALI++PTRELALQ + K +
Sbjct: 251 QRLLDEREKVGKLYALKGEEAQKYAADGYLRALIITPTRELALQVTEHLENAAKNLSVKV 310
Query: 516 AAILGGESIEQQFNVMSGSSPDIVVATPGRFLHICI---EMCLKLDNIKIVVFDEADRLF 686
I+GG E+Q + P+IVVATPGR + + ++L ++ V DEADR+
Sbjct: 311 VPIVGGMFSEKQERRLK-EKPEIVVATPGRLWELMSAGEKHLVELHSLSFFVLDEADRMV 369
Query: 687 ELGFGEQLQEICARLP 734
E G +LQ I LP
Sbjct: 370 ERGHFRELQSILDLLP 385
>At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative similar
to RNA helicase involved in rRNA processing GB:6321267
from [Saccharomyces cerevisiae]c, ontains DEAD and DEAH
box domain
Length = 541
Score = 103 bits (247), Expect = 1e-22
Identities = 73/193 (37%), Positives = 112/193 (58%), Gaps = 3/193 (1%)
Frame = +3
Query: 231 VLKGITKRGYKQPTPIQRKTIPIALTGKDVVAMARTGSGKTACFVLPILEKLLVPNNKPT 410
+L+ + + G+K+PTPIQR+ IPI L+G++ A A TGSGKT F+ P+L KL P+ T
Sbjct: 152 ILRNLAELGFKEPTPIQRQAIPILLSGRECFACAPTGSGKTFAFICPMLIKLKRPS---T 208
Query: 411 PGKNLRALILSPTRELALQTLRFVRELGKFTGLTSAAILGGESIEQQFNVMSGSSPDIVV 590
G +RA+ILSP RELA QT R ++L K G L + + + + S D+++
Sbjct: 209 DG--IRAVILSPARELAAQTAREGKKLIK--GSNFHIRLMTKPLVKTAD-FSKLWCDVLI 263
Query: 591 ATPGRFLHICIEMCLKLDNIKIVVFDEADRLFELGFGEQLQ---EICARLPSSRQTLLFS 761
+TP R + L ++ +V DE+D+LFE +Q+ + C+ PS ++ LFS
Sbjct: 264 STPMRLKRAIKAKKIDLSKVEYLVLDESDKLFEQSLLKQIDCVVKACSN-PSIIRS-LFS 321
Query: 762 ATLPKMLVXFARA 800
ATLP + AR+
Sbjct: 322 ATLPDSVEELARS 334
>At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA
helicase -Mus musculus,PIR2:I84741
Length = 621
Score = 101 bits (241), Expect = 7e-22
Identities = 61/179 (34%), Positives = 95/179 (53%), Gaps = 3/179 (1%)
Frame = +3
Query: 204 FQSMGLSFPVLKGITKRGYKQPTPIQRKTIPIALTGKDVVAMARTGSGKTACFVLPILEK 383
FQ +GLS V+ + + + PT IQ IP + K VV + TGSGKT ++LPI++
Sbjct: 114 FQELGLSEEVMGALQELNIEVPTEIQCIGIPAVMERKSVVLGSHTGSGKTLAYLLPIVQL 173
Query: 384 LLVPN---NKPTPGKNLRALILSPTRELALQTLRFVRELGKFTGLTSAAILGGESIEQQF 554
+ K T + R ++L PTREL+ Q R + + S + GG I Q
Sbjct: 174 MREDEANLGKKTKPRRPRTVVLCPTRELSEQVYRVAKSISHHARFRSILVSGGSRIRPQE 233
Query: 555 NVMSGSSPDIVVATPGRFLHICIEMCLKLDNIKIVVFDEADRLFELGFGEQLQEICARL 731
+ ++ ++ D+VV TPGR L E + +I +V DEAD +F+ GFG ++++ A L
Sbjct: 234 DSLN-NAIDMVVGTPGRILQHIEEGNMVYGDIAYLVLDEADTMFDRGFGPEIRKFLAPL 291
>At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles: PF00271 helicase conserved
C-terminal domain, PF01535 PPR repeat, PF00270:
DEAD/DEAH box helicase
Length = 1145
Score = 100 bits (239), Expect = 1e-21
Identities = 66/225 (29%), Positives = 113/225 (50%), Gaps = 22/225 (9%)
Frame = +3
Query: 192 SSGAFQSMGLSFPVLKGITKRGYKQPTPIQRKTIPIALTGKDVVAMARTGSGKTACFVLP 371
S+ +F+ +GL +L + + G+ PT +Q +P + G D V + TGSGKT ++LP
Sbjct: 108 SAKSFEELGLPDSLLDSLEREGFSVPTDVQSAAVPAIIKGHDAVIQSYTGSGKTLAYLLP 167
Query: 372 ILEKL--LVPNNKPTPGKN-----LRALILSPTRELALQTLRFVRE-LGKFTGLTSAAIL 527
IL ++ L ++ + +N ++A+I++P+REL +Q +R V + LG ++
Sbjct: 168 ILSEIGPLAEKSRSSHSENDKRTEIQAMIVAPSRELGMQIVREVEKLLGPVHRRMVQQLV 227
Query: 528 GGESIEQQFNVMSGSSPDIVVATPGRFLHICIEMCLKLDNIKIVVFDEADRLFELGFGEQ 707
GG + +Q + + P IVV TPGR I L + +V DE D L F E
Sbjct: 228 GGANRMRQEEALKKNKPAIVVGTPGRIAEISKGGKLHTHGCRFLVLDEVDELLSFNFRED 287
Query: 708 LQEICARL--------------PSSRQTLLFSATLPKMLVXFARA 800
+ I + ++RQT+L SAT+P ++ A++
Sbjct: 288 IHRILEHVGKRSGAGPKGEVDERANRQTILVSATVPFSVIRAAKS 332
>At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA
helicase, Mus musculus, PIR:I49731
Length = 496
Score = 97.1 bits (231), Expect = 1e-20
Identities = 69/209 (33%), Positives = 116/209 (55%), Gaps = 9/209 (4%)
Frame = +3
Query: 192 SSGAFQSMGLSFPVLKGI-TKRGYKQPTPIQRKTIPIALTG--KDVVAMARTGSGKTACF 362
S+ F+ + LS ++KG+ + +++P+ IQ ++P+ +T K ++A A GSGKT CF
Sbjct: 89 SASRFEDLNLSPELMKGLYVEMKFEKPSKIQAISLPMIMTPPHKHLIAQAHNGSGKTTCF 148
Query: 363 VLPILEKLLVPNNKPTPGKNLRALILSPTRELALQTLRFVRELGKFTGLTSAAILGGESI 542
VL +L ++ +P +AL + PTRELA Q + ++++GKFTG+T A + +S
Sbjct: 149 VLGMLSRVDPTLREP------QALCICPTRELANQNMEVLQKMGKFTGIT-AELAVPDST 201
Query: 543 EQQFNVMSGS--SPDIVVATPGRFLHICIEMCLKLDNIKIVVFDEADRLFEL-GFGE--- 704
G+ S +V+ TPG L L+++KI+VFDEAD + GF +
Sbjct: 202 RGAPAATRGAPVSAHVVIGTPGTLKKWMAFKRLGLNHLKILVFDEADHMLATDGFRDDSL 261
Query: 705 QLQEICARLPSSRQTLLFSATLPKMLVXF 791
++ + R+ + Q LLFSAT + + F
Sbjct: 262 KIMKDIGRVNPNFQVLLFSATFNETVKDF 290
>At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 781
Score = 96.3 bits (229), Expect = 2e-20
Identities = 62/200 (31%), Positives = 101/200 (50%), Gaps = 6/200 (3%)
Frame = +3
Query: 192 SSGAFQSMGLSFPVLKGITKRGYKQPTPIQRKTIPIALTGKDVVAMARTGSGKTACFVLP 371
S F +G S ++K + ++ + +P IQ + GK + ++GSGKT +++P
Sbjct: 372 SRKTFAEIGCSEDMMKALKEQNFDRPAHIQAMAFSPVIDGKSCIIADQSGSGKTLAYLVP 431
Query: 372 ILEKL----LVPNNKPTPGKNLRALILSPTRELALQTLRFVRELGKF-TGLTSAAILGGE 536
++++L L ++K +PG R ++L PT ELA Q L R + K S + GG
Sbjct: 432 VIQRLREEELQGHSKSSPGCP-RVIVLVPTAELASQVLANCRSISKSGVPFRSMVVTGGF 490
Query: 537 SIEQQFNVMSGSSPDIVVATPGRFLHICIEMCLKLDNIKIVVFDEADRLF-ELGFGEQLQ 713
Q + D+++ATPGRF ++ E L L N++ + DE D LF + F LQ
Sbjct: 491 RQRTQLENLE-QGVDVLIATPGRFTYLMNEGILGLSNLRCAILDEVDILFGDDEFEAALQ 549
Query: 714 EICARLPSSRQTLLFSATLP 773
+ P + Q L +ATLP
Sbjct: 550 NLINSSPVTAQYLFVTATLP 569
>At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 344
Score = 95.1 bits (226), Expect = 5e-20
Identities = 59/156 (37%), Positives = 86/156 (55%), Gaps = 2/156 (1%)
Frame = +3
Query: 315 DVVAMARTGSGKTACFVLPILEKLLVPNNKPTPGKNLRALILSPTRELALQTLR-FVREL 491
DV+ A++G GKTA FVL L+++ +P+PG+ + AL+L TRELA Q FVR
Sbjct: 2 DVICQAKSGMGKTAVFVLSTLQQI-----EPSPGQ-VSALVLCHTRELAYQICNEFVRFS 55
Query: 492 GKFTGLTSAAILGGESIEQQFNVMSGSSPDIVVATPGRFLHICIEMCLKLDNIKIVVFDE 671
+ GG +I+ +++ P IVV TPGR L + E L L N++ + DE
Sbjct: 56 TYLPDTKVSVFYGGVNIKIHKDLLKNECPHIVVGTPGRVLALAREKDLSLKNVRHFILDE 115
Query: 672 ADRLFE-LGFGEQLQEICARLPSSRQTLLFSATLPK 776
D++ E L +QEI P +Q ++FSATL K
Sbjct: 116 CDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSK 151
>At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative
EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II), Homo
sapiens, SWISSPROT:IF42_HUMAN
Length = 472
Score = 86.2 bits (204), Expect = 2e-17
Identities = 57/191 (29%), Positives = 102/191 (53%), Gaps = 9/191 (4%)
Frame = +3
Query: 231 VLKGITKRGYKQPTPIQRKTIPIALTGKDVVAMARTGSGKTACFVLPILEKLLVPNNKPT 410
+L + + G+ PT IQR+ +P TG+D + A+TGSGKT ++L ++ L+ P
Sbjct: 87 ILHRMEEIGFVFPTDIQREALPTLFTGRDCILHAQTGSGKTLTYLL-LIFSLINPQR--- 142
Query: 411 PGKNLRALILSPTRELALQTLRFVRELG-----KFTGLTSAAILGGESIEQQFNVMSGSS 575
+++A+I+ PTREL +Q + R L G T A+L G ++ + + +
Sbjct: 143 --SSVQAVIVVPTRELGMQVTKVARMLAAKSEIDVKGCTVMALLDGGTLRRHKSWLKAEP 200
Query: 576 PDIVVATPGRFLHICIEMCLKLDNIKIVVFDEADRLF----ELGFGEQLQEICARLPSSR 743
P I+VAT H+ + ++D+++++V DE D LF ++G +L + R
Sbjct: 201 PAILVATVASLCHMLEKHIFRIDSVRVLVVDEVDFLFYSSKQVGSVRKLLTSFSSC-DKR 259
Query: 744 QTLLFSATLPK 776
QT+ SA++P+
Sbjct: 260 QTVFASASIPQ 270
>At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)
similar to RNA helicase GI:3776015 from [Arabidopsis
thaliana]; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00270: DEAD/DEAH box
helicase; matches EST OAO811-2
Length = 581
Score = 70.9 bits (166), Expect = 9e-13
Identities = 64/186 (34%), Positives = 94/186 (50%), Gaps = 16/186 (8%)
Frame = +3
Query: 201 AFQSMGLSFPVLKGITKRGYKQPTPIQRKTIPIALTGKDVVAMARTGSGKTACFVLPILE 380
+++S+GLS V + G+ +P+ Q IP L+GKDV+ A TGSGKT ++ PI++
Sbjct: 81 SWKSLGLSDNVSIALRDSGFDRPSLTQAVCIPSILSGKDVIVAAETGSGKTHGYLAPIID 140
Query: 381 KLL-------VPN--NKPTPGKNLRALILSPTRELALQTLRFVRELGKFTG---LTSAAI 524
+L V N +P P KN+ +LIL P L Q +R V L G L A+
Sbjct: 141 QLTNTALDSEVTNREERPFPLKNI-SLILCPNVMLCEQVVRMVNGLVDEDGNPLLRVEAV 199
Query: 525 LGGESIEQQFNVMSGSSPDIVVATPGRFL-HICIEMCLKLD---NIKIVVFDEADRLFEL 692
G + + PDI+V+TP L +I + +L+ +K VVFDEAD L
Sbjct: 200 CGSQGWPDRL-------PDIIVSTPAALLNNIEPKRNRRLEFLRCVKYVVFDEADMLLCG 252
Query: 693 GFGEQL 710
F Q+
Sbjct: 253 SFQNQI 258
>At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative similar
to D-E-A-D box protein [Drosophila melanogaster]
GI:499204; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 512
Score = 59.7 bits (138), Expect = 2e-09
Identities = 52/173 (30%), Positives = 82/173 (47%), Gaps = 21/173 (12%)
Frame = +3
Query: 312 KDVVAMARTGSGKTACFVLPILEKLLVPNNKPTPGKNLRALILSPTRELALQTLRFVREL 491
+D+ + TGSGKT + LPI++ L P + LRAL++ PTR+LALQ +
Sbjct: 63 RDICVNSPTGSGKTLSYALPIVQLLA-----SRPVRCLRALVVLPTRDLALQVKDVFDAI 117
Query: 492 GKFTGLTSAAILGGESIEQQFNVM-------SG-------------SSPDIVVATPGRFL 611
GL+ + +G SI + + + +G S+ DI+VATPGR +
Sbjct: 118 APAVGLSVGSAVGQSSIAGEISQLIKTPKLDAGICYDPDDLSQNLESAVDILVATPGRLM 177
Query: 612 -HICIEMCLKLDNIKIVVFDEADRLFELGFGEQLQEICARLPSSRQTLLFSAT 767
HI L++++ +V DE DRL + L + +S +L S T
Sbjct: 178 DHINNTKGFTLEHLRYLVVDETDRLLREAYQSWLPTVLQLTQTSDDSLFPSFT 230
>At5g08110.1 68418.m00946 DEAD/DEAH box helicase, putative several
putative ATP-dependent helicases
Length = 1058
Score = 43.6 bits (98), Expect = 2e-04
Identities = 31/88 (35%), Positives = 45/88 (51%), Gaps = 1/88 (1%)
Frame = +3
Query: 279 QRKTIPIALTGKDVVAMARTGSGKTACFVLPILEKLLVPNNKPTPGKNLRALILSPTREL 458
Q + I AL GK+V T SGK+ C+ +P+ E+L K T N AL L PT+ L
Sbjct: 398 QAEAISAALAGKNVAVATMTSSGKSLCYNVPVFEELC----KDT---NSCALYLFPTKAL 450
Query: 459 ALQTLRFVRELGK-FTGLTSAAILGGES 539
A LR + +L K F + + G++
Sbjct: 451 AQDQLRALSDLIKGFEASINMGVYDGDT 478
>At2g42270.1 68415.m05232 U5 small nuclear ribonucleoprotein helicase,
putative
Length = 2172
Score = 40.3 bits (90), Expect = 0.001
Identities = 39/162 (24%), Positives = 72/162 (44%), Gaps = 4/162 (2%)
Frame = +3
Query: 258 YKQPTPIQRKTIPIAL-TGKDVVAMARTGSGKTACFVLPILEKLLVPNNKPTPGKNLRAL 434
+K P+Q + + T +VV A TGSGKT C IL N+ P +R +
Sbjct: 1349 FKHFNPVQTQVFTVLYNTSDNVVVAAPTGSGKTICAEFAILR-----NHLEGPDSAMRVV 1403
Query: 435 ILSPTRELALQTLR-FVRELGKFTGLTSAAILGGESIEQQFNVMSGSSPDIVVATPGRF- 608
++P +A + R + ++ GK GL + G E ++ I+++TP ++
Sbjct: 1404 YIAPLEAIAKEQFRDWEKKFGKGLGLRVVELTG----ETLLDLKLLEKGQIIISTPEKWD 1459
Query: 609 -LHICIEMCLKLDNIKIVVFDEADRLFELGFGEQLQEICARL 731
L + + + + + DE + G G+ L+ I +R+
Sbjct: 1460 ALSRRWKQRKYIQQVSLFIVDELHLIGGQG-GQVLEVIVSRM 1500
Score = 37.9 bits (84), Expect = 0.008
Identities = 49/184 (26%), Positives = 80/184 (43%), Gaps = 10/184 (5%)
Frame = +3
Query: 252 RGYKQPTPIQRKTIPIALTGKD-VVAMARTGSGKTACFVLPILEKL---LVPNNKPTPGK 419
RG +Q +Q K AL D ++ A TG+GKT VL IL +L + P G
Sbjct: 501 RGMQQLNRVQSKVYGTALFKADNILLCAPTGAGKTNVAVLTILHQLGLNMNPGGTFNHG- 559
Query: 420 NLRALILSPTRELALQTLRFVRELGKFTGLTSAAILGGESI------EQQFNVMSGSSPD 581
N + + ++P + L + + + + K G+T + G +S+ E Q V + D
Sbjct: 560 NYKIVYVAPMKALVAEVVDSLSQRLKDFGVTVKELSGDQSLTGQEIKETQIIVTTPEKWD 619
Query: 582 IVVATPGRFLHICIEMCLKLDNIKIVVFDEADRLFELGFGEQLQEICARLPSSRQTLLFS 761
I+ G + + L +D I + + D + E L++I + R L S
Sbjct: 620 IITRKSGDRTYTQLVRLLIIDEIHL-LDDNRGPVLESIVARTLRQIESTKEHIRLVGL-S 677
Query: 762 ATLP 773
ATLP
Sbjct: 678 ATLP 681
>At1g20960.1 68414.m02624 U5 small nuclear ribonucleoprotein helicase,
putative similar to SP|O75643 U5 small nuclear
ribonucleoprotein 200 kDa helicase {Homo sapiens};
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF02889:
Sec63 domain
Length = 2171
Score = 39.1 bits (87), Expect = 0.003
Identities = 31/124 (25%), Positives = 58/124 (46%), Gaps = 2/124 (1%)
Frame = +3
Query: 243 ITKRGYKQPTPIQRKTIPIAL-TGKDVVAMARTGSGKTACFVLPILEKLLVPNNKPTPGK 419
I + +K P+Q + + T +V+ A TGSGKT C IL N+ P
Sbjct: 1343 ILYQDFKHFNPVQTQVFTVLYNTNDNVLVAAPTGSGKTICAEFAILR-----NHHEGPDA 1397
Query: 420 NLRALILSPTRELALQTLR-FVRELGKFTGLTSAAILGGESIEQQFNVMSGSSPDIVVAT 596
+R + ++P +A + R + + GK GL + G +++ + + G I+++T
Sbjct: 1398 TMRVVYIAPLEAIAKEQFRIWEGKFGKGLGLRVVELTGETALDLKL-LEKG---QIIIST 1453
Query: 597 PGRF 608
P ++
Sbjct: 1454 PEKW 1457
Score = 33.9 bits (74), Expect = 0.13
Identities = 45/185 (24%), Positives = 82/185 (44%), Gaps = 11/185 (5%)
Frame = +3
Query: 252 RGYKQPTPIQRKTIPIAL-TGKDVVAMARTGSGKTACFVLPILEKLLVPNNKPTPGK--- 419
+G +Q +Q K AL ++++ A TG+GKT +L IL++L + N+ T G
Sbjct: 500 KGMQQLNRVQSKVYDTALFKAENILLCAPTGAGKTNVAMLTILQQLEM--NRNTDGTYNH 557
Query: 420 -NLRALILSPTRELALQTLRFVRELGKFTGLTSAAILGGESI------EQQFNVMSGSSP 578
+ + + ++P + L + + + K G+ + G +S+ E Q V +
Sbjct: 558 GDYKIVYVAPMKALVAEVVGNLSNRLKDYGVIVRELSGDQSLTGREIEETQIIVTTPEKW 617
Query: 579 DIVVATPGRFLHICIEMCLKLDNIKIVVFDEADRLFELGFGEQLQEICARLPSSRQTLLF 758
DI+ G + + L +D I + + D + E L++I + R L
Sbjct: 618 DIITRKSGDRTYTQLVRLLIIDEIHL-LHDNRGPVLESIVARTLRQIETTKENIRLVGL- 675
Query: 759 SATLP 773
SATLP
Sbjct: 676 SATLP 680
>At5g20320.1 68418.m02418 DEAD/DEAH box helicase, putative similar
to CAF protein [Arabidopsis thaliana] GI:6102610;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF03368:
Domain of unknown function, PF00636: RNase3 domain,
PF00035: Double-stranded RNA binding motif
Length = 1676
Score = 34.3 bits (75), Expect = 0.097
Identities = 32/124 (25%), Positives = 60/124 (48%), Gaps = 2/124 (1%)
Frame = +3
Query: 306 TGKDVVAMARTGSGKTACFVLPILEKLLVPNNKPTPGKNLRALILSPTRELALQTLRFVR 485
T ++V+ TG GKT V+ I E + + +P K++ + L+PT L Q + +
Sbjct: 136 TEENVIVYLGTGCGKTHIAVMLIYE---LGHLVLSPKKSV-CIFLAPTVALVEQQAKVIA 191
Query: 486 ELGKFTGLTSAAILGGESIEQQFNVMSG--SSPDIVVATPGRFLHICIEMCLKLDNIKIV 659
+ F A GG+ I + + ++ +++V TP LH +K++ I ++
Sbjct: 192 DSVNFK---VAIHCGGKRIVKSHSEWEREIAANEVLVMTPQILLHNLQHCFIKMECISLL 248
Query: 660 VFDE 671
+FDE
Sbjct: 249 IFDE 252
>At5g27680.1 68418.m03319 DEAD/DEAH box helicase, putative similar
to WRN (Werner syndrome) protein - Mus musculus,
EMBL:AF241636; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00627: UBA/TS-N domain
Length = 858
Score = 33.9 bits (74), Expect = 0.13
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = +3
Query: 279 QRKTIPIALTGKDVVAMARTGSGKTACFVLPIL 377
QR+ + + KD + +A TGSGK+ CF +P L
Sbjct: 173 QREALSTWVAHKDCLVLAATGSGKSLCFQIPAL 205
>At3g27730.1 68416.m03462 ATP-dependent DNA helicase, putative
similar to SP|P51979 ATP-dependent DNA helicase MER3 (EC
3.6.1.-) {Saccharomyces cerevisiae}; contains Pfam
profiles PF00270: DEAD/DEAH box helicase, PF02889: Sec63
domain
Length = 1113
Score = 33.9 bits (74), Expect = 0.13
Identities = 27/116 (23%), Positives = 50/116 (43%), Gaps = 5/116 (4%)
Frame = +3
Query: 276 IQRKTIPIALTGK-DVVAMARTGSGKTACF---VLPILEKLLVPNNKPTPGKN-LRALIL 440
+Q + P+ +++ A TGSGKT F +L + K + K L+ + +
Sbjct: 28 LQSECFPLCFHSDINMIISAPTGSGKTVLFELCILRLFSKSISKEGSFLHAKGALKTVYI 87
Query: 441 SPTRELALQTLRFVRELGKFTGLTSAAILGGESIEQQFNVMSGSSPDIVVATPGRF 608
SP++ L + LR + G++ + G N+ DI++ TP +F
Sbjct: 88 SPSKALVQEKLRDWNQKFNSWGISCLELTGDNETYSTKNIQDA---DIILTTPEKF 140
>At1g31360.1 68414.m03838 DNA helicase, putative (RECQl2) nearly
identical to DNA Helicase [Arabidopsis thaliana]
GI:11121445
Length = 705
Score = 32.7 bits (71), Expect = 0.30
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = +3
Query: 279 QRKTIPIALTGKDVVAMARTGSGKTACFVLPIL 377
Q++ I +TG+DV+ + G GK+ C+ LP +
Sbjct: 94 QKEIINAIMTGRDVLVIMAAGGGKSLCYQLPAM 126
>At1g27880.1 68414.m03416 ATP-dependent DNA helicase, putative
similar to SP|O94761 ATP-dependent DNA helicase Q4
(RecQ4) {Homo sapiens}; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 911
Score = 32.3 bits (70), Expect = 0.39
Identities = 33/141 (23%), Positives = 64/141 (45%), Gaps = 1/141 (0%)
Frame = +3
Query: 255 GYKQPTPIQRKTIPIALTGKDVVAMARTGSGKTACFVLPILEKLLVPNNKPTPGKNLRAL 434
GY Q + I + L G + + TG+GK+ C+ +P +++P L
Sbjct: 266 GYDSFRDGQLQAIKMILGGSSTMLVLPTGAGKSLCYQIP---AMILPG---------ITL 313
Query: 435 ILSPTRELALQTLRFVRELGKFTGLTSAAILGGESIEQQFNVMSGSSPDIVVATPGRFLH 614
++SP L + L+ + + K GL S++ E+ E + G ++ +P R L+
Sbjct: 314 VVSPLVSLMIDQLKHLPSIIK-GGLLSSSQRPEEATETLRKLKEGII-KVLFVSPERLLN 371
Query: 615 ICIEMCLKLD-NIKIVVFDEA 674
+ ++ ++ +VV DEA
Sbjct: 372 VEFLSMFRMSLSVSLVVVDEA 392
>At1g33270.2 68414.m04115 patatin-related contains Patatin domain
PF01734
Length = 287
Score = 31.9 bits (69), Expect = 0.52
Identities = 24/85 (28%), Positives = 37/85 (43%)
Frame = +3
Query: 429 ALILSPTRELALQTLRFVRELGKFTGLTSAAILGGESIEQQFNVMSGSSPDIVVATPGRF 608
A+ L T ++L+T + + L + GG S Q F+ S + VAT F
Sbjct: 2 AMSLRSTPFISLRTRKSFNLSPRILALRLSCCSGGSSQNQNFSTDSENKRSFAVATGELF 61
Query: 609 LHICIEMCLKLDNIKIVVFDEADRL 683
+ I + LK N K D+ DR+
Sbjct: 62 IGIASRL-LKSSNQKTPPIDDGDRI 85
>At1g33270.1 68414.m04114 patatin-related contains Patatin domain
PF01734
Length = 369
Score = 31.9 bits (69), Expect = 0.52
Identities = 24/85 (28%), Positives = 37/85 (43%)
Frame = +3
Query: 429 ALILSPTRELALQTLRFVRELGKFTGLTSAAILGGESIEQQFNVMSGSSPDIVVATPGRF 608
A+ L T ++L+T + + L + GG S Q F+ S + VAT F
Sbjct: 2 AMSLRSTPFISLRTRKSFNLSPRILALRLSCCSGGSSQNQNFSTDSENKRSFAVATGELF 61
Query: 609 LHICIEMCLKLDNIKIVVFDEADRL 683
+ I + LK N K D+ DR+
Sbjct: 62 IGIASRL-LKSSNQKTPPIDDGDRI 85
>At1g10930.1 68414.m01255 DNA helicase (RECQl4A) nearly identical to
DNA Helicase [Arabidopsis thaliana] GI:11121449
Length = 1188
Score = 31.5 bits (68), Expect = 0.68
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +3
Query: 273 PIQRKTIPIALTGKDVVAMARTGSGKTACFVLPIL 377
P QR+ I ++G DV + TG GK+ + LP L
Sbjct: 456 PNQREIINATMSGSDVFVLMPTGGGKSLTYQLPAL 490
>At4g35740.1 68417.m05072 DNA helicase (RECQl3) identical to DNA
Helicase [Arabidopsis thaliana] GI:11121447; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 713
Score = 31.1 bits (67), Expect = 0.90
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +3
Query: 279 QRKTIPIALTGKDVVAMARTGSGKTACFVLPILEK 383
Q + I ++G+D + TG GK+ C+ +P L K
Sbjct: 41 QLEAIQAVVSGRDCFCLMPTGGGKSICYQIPALAK 75
>At1g01040.1 68414.m00004 DEAD/DEAH box helicase carpel factory /
CAF identical to RNA helicase/RNAseIII CAF protein
GB:AAF03534 GI:6102610 from [Arabidopsis thaliana]
Length = 1909
Score = 30.7 bits (66), Expect = 1.2
Identities = 29/153 (18%), Positives = 60/153 (39%), Gaps = 1/153 (0%)
Frame = +3
Query: 312 KDVVAMARTGSGKTACFVLPILEKLLVPNNKPTPGKNLRALILSPTRELALQTLRFVREL 491
K+ +A TG+GKT +L I V + + + + ++ L P L Q +R
Sbjct: 263 KNTIAFLETGAGKTLIAILLIKS---VHKDLMSQNRKMLSVFLVPKVPLVYQQAEVIRNQ 319
Query: 492 GKFTGLTSAAILGGESIEQQFNVMSGSSPDIVVATPGRFLHICIEMCLKLDNIKIVVFDE 671
F +G + + + S ++V T L+I ++++ I +++ DE
Sbjct: 320 TCFQVGHYCGEMGQDFWDSRRWQREFESKQVLVMTAQILLNILRHSIIRMETIDLLILDE 379
Query: 672 ADRLFEL-GFGEQLQEICARLPSSRQTLLFSAT 767
+ + + E P ++ +F T
Sbjct: 380 CHHAVKKHPYSLVMSEFYHTTPKDKRPAIFGMT 412
>At5g61140.1 68418.m07670 DEAD box RNA helicase, putative similar to
ASC-1 complex subunit P200 [Homo sapiens] GI:12061185;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF02889:
Sec63 domain
Length = 2146
Score = 30.3 bits (65), Expect = 1.6
Identities = 45/189 (23%), Positives = 81/189 (42%), Gaps = 13/189 (6%)
Frame = +3
Query: 255 GYKQPTPIQRKTIPIAL-TGKDVVAMARTGSGKTACFVLPILEKLLVPNNKPTPGKN-LR 428
GYK IQ + T ++++ A TG+GKT ++ +L ++ KN +
Sbjct: 504 GYKSLNRIQSRIFQTVYHTNENILVCAPTGAGKTNIAMISVLHEIKQHFRDGYLHKNEFK 563
Query: 429 ALILSPTRELALQ-TLRFVRELGKFTGLTSAAILGGESIEQQFNVMSGSSPDIVVATPGR 605
+ ++P + LA + T F R L + + G + Q ++V TP +
Sbjct: 564 IVYVAPMKALAAEVTSAFSRRLAPL-NMVVKELTG----DMQLTKTELEETQMIVTTPEK 618
Query: 606 FLHI---CIEMCLKLDNIKIVVFDEADRLFELGFGEQLQEICARL---PSSRQTLL---- 755
+ I +M + + +K+++ DE L G ++ + AR S QT++
Sbjct: 619 WDVITRKSSDMSMSM-LVKLLIIDEV-HLLNDDRGAVIEALVARTLRQVESTQTMIRIVG 676
Query: 756 FSATLPKML 782
SATLP L
Sbjct: 677 LSATLPSYL 685
>At3g62090.1 68416.m06976 basic helix-loop-helix (bHLH) protein,
putative very strong similarity to PIF3 like basic Helix
Loop Helix protein 2 (PIL2) [Arabidopsis thaliana]
GI:22535494
Length = 346
Score = 29.9 bits (64), Expect = 2.1
Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = -2
Query: 601 PGVATTMSGEEPDI-TLNCCSMDSPPRIAALVNPVNFPSSLTNLN 470
PG+ M P I T NC PP AA N + P+SL+NL+
Sbjct: 290 PGLMP-MQNSAPFIPTENCSPQSVPPSCAAFPNQIPNPNSLSNLD 333
>At3g05740.1 68416.m00644 DNA helicase (RECQI1) identical to DNA
Helicase [Arabidopsis thaliana] GI:10944747
Length = 606
Score = 29.9 bits (64), Expect = 2.1
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +3
Query: 255 GYKQPTPIQRKTIPIALTGKDVVAMARTGSGKTACFVLP 371
G K P+Q + ++ KD + TG GK+ C+ LP
Sbjct: 203 GNKVFRPLQHQACRASMERKDCFVLMPTGGGKSLCYQLP 241
>At5g56100.1 68418.m06999 glycine-rich protein / oleosin contains
Pfam PF01277: Oleosin domain
Length = 150
Score = 29.1 bits (62), Expect = 3.7
Identities = 21/74 (28%), Positives = 33/74 (44%)
Frame = -2
Query: 487 SLTNLNVCNASSLVGERINALKFFPGVGLLFGTRSFSRIGRTKQAVFPDPVRAIATTSFP 308
++T+ SS+V + A+ VG LFG SFS + + P+ I +F
Sbjct: 13 AITDGERTTGSSVVAATVAAVAV---VGPLFGLMSFSFVATVTLFLIASPLLLIFAPAFM 69
Query: 307 VNAIGMVLRCIGVG 266
V +V +GVG
Sbjct: 70 VTVAVLVSAMVGVG 83
>At1g08100.1 68414.m00886 high-affinity nitrate transporter (ACH2)
identical to high-affinity nitrate transporter ACH2
[Arabidopsis thaliana] GI:3608364
Length = 522
Score = 28.3 bits (60), Expect = 6.4
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = -1
Query: 308 GQCYWYGLTLYRCWLFV 258
G+ WY +T YR W+FV
Sbjct: 267 GKILWYAVTNYRTWIFV 283
>At1g08090.1 68414.m00885 high-affinity nitrate transporter (ACH1)
identical to trans-membrane nitrate transporter protein
AtNRT2:1 [Arabidopsis thaliana] GI:3747058,
high-affinity nitrate transporter ACH1 [Arabidopsis
thaliana] GI:3608362
Length = 530
Score = 28.3 bits (60), Expect = 6.4
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = -1
Query: 308 GQCYWYGLTLYRCWLFV 258
G+ WY +T YR W+FV
Sbjct: 269 GKILWYAVTNYRTWIFV 285
>At3g22160.1 68416.m02797 VQ motif-containing protein contains
PF05678: VQ motif
Length = 192
Score = 27.9 bits (59), Expect = 8.4
Identities = 19/59 (32%), Positives = 28/59 (47%)
Frame = +3
Query: 402 KPTPGKNLRALILSPTRELALQTLRFVRELGKFTGLTSAAILGGESIEQQFNVMSGSSP 578
KPT ++ RA +PT L T F + ++TG SA G + F++ S S P
Sbjct: 52 KPTRRRS-RASRRTPTTLLNTDTSNFRAMVQQYTGGPSAMAFGSGNTTSAFSLTSSSDP 109
>At2g19920.1 68415.m06036 RNA-dependent RNA polymerase family
protein contains Pfam domain, PF05183: RNA dependent RNA
polymerase
Length = 927
Score = 27.9 bits (59), Expect = 8.4
Identities = 25/82 (30%), Positives = 37/82 (45%), Gaps = 4/82 (4%)
Frame = +3
Query: 372 ILEKLLVPNNKPTPGK-NLRALILSPTRELALQTLRFVRELGKFTGLTSAAIL---GGES 539
+LEK+ +N P K R + S + ELAL+TLR V + L I +
Sbjct: 29 MLEKVYGKHNHHPPIKVETRRRLSSISEELALETLRKVLNMPNVKTLDGIIIYFLNDAVT 88
Query: 540 IEQQFNVMSGSSPDIVVATPGR 605
++ + SG SP TPG+
Sbjct: 89 VDGSPRLWSGESPVQFPRTPGK 110
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,859,629
Number of Sequences: 28952
Number of extensions: 286442
Number of successful extensions: 908
Number of sequences better than 10.0: 85
Number of HSP's better than 10.0 without gapping: 760
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 776
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1843581600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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