Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_O10
         (817 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52992| Best HMM Match : No HMM Matches (HMM E-Value=.)              81   1e-15
SB_34003| Best HMM Match : No HMM Matches (HMM E-Value=.)              67   1e-11
SB_34007| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_56228| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_39062| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_35587| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_59515| Best HMM Match : Pox_A_type_inc (HMM E-Value=3.2e-31)        29   4.5  
SB_50667| Best HMM Match : LIM (HMM E-Value=0.95)                      29   4.5  
SB_9774| Best HMM Match : DUF1572 (HMM E-Value=9.7)                    29   6.0  
SB_38051| Best HMM Match : LIM (HMM E-Value=0.34)                      29   6.0  
SB_18835| Best HMM Match : MORN (HMM E-Value=0.94)                     29   6.0  
SB_56500| Best HMM Match : Tctex-1 (HMM E-Value=0.0079)                28   7.9  
SB_13097| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  
SB_4647| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.9  
SB_49562| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  
SB_38795| Best HMM Match : M (HMM E-Value=2.4e-07)                     28   7.9  

>SB_52992| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 516

 Score = 80.6 bits (190), Expect = 1e-15
 Identities = 51/130 (39%), Positives = 73/130 (56%), Gaps = 9/130 (6%)
 Frame = +2

Query: 398 KKITTTDTAIHFKKLK-----SVKLGIDDYQKFLDDLAKNKKVELDEIKKKLTT-C-GQP 556
           +K T+TDT I F + +       K+  + ++  L   A+ K    D++ K     C G+ 
Sbjct: 388 QKFTSTDTDIIFSRTEVKPKTERKINFNQFKVALGLCAEKKFGSKDQVGKLTEKICKGKG 447

Query: 557 GITSHVTKSPAAAAAVDRLTDTSKYTGSHRQRFDETGKGKGIAGRKDLXD--GSGYVTGY 730
             TS  TK+      V+RLTDT  YTGSH++RFD++GKGKGI GR D  D    GYV  Y
Sbjct: 448 PATSGATKA-VKVGGVERLTDTKCYTGSHKERFDKSGKGKGIEGRVDRDDKAAQGYVGNY 506

Query: 731 QHKDTYNKSH 760
           + + TY+K+H
Sbjct: 507 KGEGTYDKTH 516


>SB_34003| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 207

 Score = 67.3 bits (157), Expect = 1e-11
 Identities = 43/111 (38%), Positives = 61/111 (54%), Gaps = 6/111 (5%)
 Frame = +2

Query: 365 KWMKQAKVIDGKKITTTDTAIHFKK--LKSV---KLGIDDYQKFLDDLAKNKKVELDEIK 529
           K  +  K+ D KK T  D+ I F +  +KS    K+    ++  L   A+ K  + +++ 
Sbjct: 34  KLFRDLKIYD-KKFTQIDSDIIFNRPEVKSKSERKVNFSQFKAALSLCAEKKYGKREDVI 92

Query: 530 KKLTT-CGQPGITSHVTKSPAAAAAVDRLTDTSKYTGSHRQRFDETGKGKG 679
           K +   C   G  +  T     A AVDRLTDT KYTGSH++RFDETGKG+G
Sbjct: 93  KLVDKICEGKGPVASKTTKVVKAGAVDRLTDTRKYTGSHKERFDETGKGRG 143


>SB_34007| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1411

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 29/128 (22%), Positives = 61/128 (47%), Gaps = 13/128 (10%)
 Frame = +2

Query: 194 QEVKDVKLENGNAPGASNGTSSKSE----DNALXXXXXXXXXXXXGDPKSDGKAITLSQ- 358
           ++ K+VK + G     ++GTS KSE    +                 P+   K I  S+ 
Sbjct: 483 EKKKEVKKKKGKEKSTTSGTSKKSEAEIQEKKEIKVEEAKPVAKSDKPQESVKDIERSEV 542

Query: 359 -----SD-KWMKQAKVIDGKKITTTDTAIHFKKLKSVKLGID--DYQKFLDDLAKNKKVE 514
                +D K  ++A +I+ +K++  +  +   K + VK+  +  D    +++L +N+++E
Sbjct: 543 YQKLATDYKNTEKALLIEQEKLSEMEKELENSKDEKVKIEQEKADLDIAIENLKRNQEIE 602

Query: 515 LDEIKKKL 538
           L+E+K  +
Sbjct: 603 LEELKDNI 610


>SB_56228| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 969

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +2

Query: 521  EIKKKLTTCGQPGITSHVTKSPAAAAAVDRLTD 619
            E +KK T CG   +    TKS A   ++DRL D
Sbjct: 915  ETEKKCTVCGAQLLLQGYTKSHAQCFSIDRLDD 947


>SB_39062| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 256

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 24/89 (26%), Positives = 35/89 (39%), Gaps = 1/89 (1%)
 Frame = +2

Query: 251 TSSKSEDNALXXXXXXXXXXXXGDPKSDGKAITLSQSDKWMKQA-KVIDGKKITTTDTAI 427
           T +K+ED                 PKS  KA      DK  K+  K  D  K +T +  +
Sbjct: 8   TPTKTEDRVPAKKRKLSETKLKSSPKS-AKATPSKTGDKQRKKTPKDQDTNKGSTDNADV 66

Query: 428 HFKKLKSVKLGIDDYQKFLDDLAKNKKVE 514
             K+ K  KL   DY  F  +L   + ++
Sbjct: 67  EIKRDKQGKLVFPDYPDFKPNLTPKEVMQ 95


>SB_35587| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 953

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +2

Query: 521  EIKKKLTTCGQPGITSHVTKSPAAAAAVDRLTDT 622
            + +KK T CG P +    TKS     ++DRL D+
Sbjct: 899  DAEKKCTVCGTPLLFQGYTKSHPQCFSIDRLDDS 932


>SB_59515| Best HMM Match : Pox_A_type_inc (HMM E-Value=3.2e-31)
          Length = 2122

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 33/149 (22%), Positives = 64/149 (42%), Gaps = 8/149 (5%)
 Frame = +2

Query: 140  RKMSTEAQNTDAAVEQVTQEVKDVKLENGNAPGASN-GTSSKSEDNALXXXXXXXXXXXX 316
            +++  E       ++++ +E++D+ L+ G +  + N G    SE +A             
Sbjct: 1716 QEVEHELDRAKKRIQELEEEIRDLMLKLGTSRESDNQGDKQNSEMSARINSLEKRITTLQ 1775

Query: 317  GDPKSDGKAIT-----LSQ-SDKWMKQAKVIDGKKITTTDTAIHFKKLKSVK-LGIDDYQ 475
            G  +   + I      L++ SD   + +K I+   I   D +  ++K    K L I+D +
Sbjct: 1776 GQAQDKDEEIAQLKRKLNEYSDGLGQGSKDIETHLIEIKDKSEIYRKADKAKALVIEDLR 1835

Query: 476  KFLDDLAKNKKVELDEIKKKLTTCGQPGI 562
                 L    ++ELD +KK L    Q G+
Sbjct: 1836 AEKTSL----EIELDNLKKDLEFAKQTGV 1860


>SB_50667| Best HMM Match : LIM (HMM E-Value=0.95)
          Length = 318

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +2

Query: 521 EIKKKLTTCGQPGITSHVTKSPAAAAAVDRLTDT 622
           ++ KK T CG   +    TKS     ++DRL DT
Sbjct: 264 DVDKKCTVCGTQLLLQGYTKSHLQCFSIDRLDDT 297


>SB_9774| Best HMM Match : DUF1572 (HMM E-Value=9.7)
          Length = 504

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = -2

Query: 165 FCASVDIFLYKCLMYLCDDIIYYASESVADRRLSD 61
           F AS DI   +CL    D +IY AS +  D  L D
Sbjct: 153 FIASEDILQIQCLYPDTDSVIYIASPAALDPPLGD 187


>SB_38051| Best HMM Match : LIM (HMM E-Value=0.34)
          Length = 168

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +2

Query: 521 EIKKKLTTCGQPGITSHVTKSPAAAAAVDRLTDTSKY 631
           + +KK T CG   +    TKS     ++DRL D+  Y
Sbjct: 114 DAEKKCTVCGTQLLLQGYTKSHPQCFSIDRLDDSQVY 150


>SB_18835| Best HMM Match : MORN (HMM E-Value=0.94)
          Length = 53

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +2

Query: 617 DTSKYTGSHRQRFDETGKGKGIAGRKDLXDGSGYVTGYQH 736
           D  +Y G   +  +  G+GK + G  DL  GS Y  G +H
Sbjct: 13  DIGEYEGDRNELGERHGQGKALHGNGDLYTGS-YWNGKRH 51


>SB_56500| Best HMM Match : Tctex-1 (HMM E-Value=0.0079)
          Length = 502

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 15/34 (44%), Positives = 18/34 (52%)
 Frame = +3

Query: 324 PSPMEKPSRSRKATNG*SKPKSLMERK*QQRTRP 425
           P P   P  SRK + G  KP SL E K ++ T P
Sbjct: 296 PPPTPPPKPSRKHSLGTRKPISLQESKQRRNTDP 329


>SB_13097| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 607

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 16/36 (44%), Positives = 18/36 (50%)
 Frame = +2

Query: 563 TSHVTKSPAAAAAVDRLTDTSKYTGSHRQRFDETGK 670
           TS V KS AA    DR   +   TGS  Q+   TGK
Sbjct: 304 TSGVPKSSAALLLSDRHLPSKNSTGSSSQKISVTGK 339


>SB_4647| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2735

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 23/94 (24%), Positives = 38/94 (40%), Gaps = 6/94 (6%)
 Frame = +2

Query: 140  RKMSTEAQNTDAAV----EQVTQEVKDVKLENGNAPGASNGTS--SKSEDNALXXXXXXX 301
            ++++ +A + DA+V        +  +DV  +       S+GT   SK  +          
Sbjct: 720  QEVTRDAASQDASVTTQGNTSHRNTRDVMSQENTIDMTSHGTIMISKKRELTSQDANKTS 779

Query: 302  XXXXXGDPKSDGKAITLSQSDKWMKQAKVIDGKK 403
                 G P  DGK +  S  +K +   KV  GKK
Sbjct: 780  KKTTKGLPSWDGKELVTSHKNKRVTSGKVESGKK 813


>SB_49562| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 734

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +2

Query: 416 DTAIHFKKLKSVKLGIDDYQKFLDDLAKNKKVELDEIKKKL 538
           D+   F++L    LG+DD +  ++D   N K   D  KKKL
Sbjct: 400 DSEQMFQQLNHEVLGVDDDEDSVNDEENNSKTGNDLYKKKL 440


>SB_38795| Best HMM Match : M (HMM E-Value=2.4e-07)
          Length = 1447

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 20/73 (27%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
 Frame = +2

Query: 2    SXKQQGKATAGSISAATKSASLKRLSATDSLA*Y---MISSHKYIKHL*RKMSTEAQNTD 172
            S KQ+  A    + A T+    +  ++ DS + Y   +++    I+    KMS+E     
Sbjct: 866  SAKQEADALKDEVKALTQQLLRQHDASLDSRSKYEKLIMNIRGEIEREREKMSSERHTLA 925

Query: 173  AAVEQVTQEVKDV 211
            + +EQ T+E KD+
Sbjct: 926  SQLEQATRENKDL 938


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,619,689
Number of Sequences: 59808
Number of extensions: 491970
Number of successful extensions: 1831
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1657
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1825
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2275631710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)