Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_F_O08
(484 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g57815.1 68418.m07230 cytochrome c oxidase subunit 6b, putati... 104 3e-23
At1g22450.1 68414.m02806 cytochrome c oxidase subunit 6b, putati... 99 2e-21
At4g28060.1 68417.m04025 cytochrome c oxidase subunit 6b, putati... 97 7e-21
At1g32710.1 68414.m04034 cytochrome c oxidase subunit VIb family... 52 2e-07
At2g34710.1 68415.m04263 homeobox-leucine zipper transcription f... 29 1.2
At5g54010.1 68418.m06718 glycosyltransferase family protein cont... 29 1.6
At4g08500.1 68417.m01401 mitogen-activated protein kinase kinase... 29 1.6
At4g00585.1 68417.m00082 expressed protein 29 2.2
At3g17205.1 68416.m02196 HECT-domain-containing protein / ubiqui... 29 2.2
At2g19010.1 68415.m02219 GDSL-motif lipase/hydrolase family prot... 29 2.2
At1g30490.1 68414.m03727 homeobox-leucine zipper transcription f... 29 2.2
At1g01240.3 68414.m00041 expressed protein 28 3.8
At1g01240.2 68414.m00040 expressed protein 28 3.8
At1g01240.1 68414.m00039 expressed protein 28 3.8
At5g55600.1 68418.m06932 agenet domain-containing protein / brom... 27 5.0
At5g44220.1 68418.m05410 F-box family protein similar to unknown... 27 5.0
At1g50410.1 68414.m05650 SNF2 domain-containing protein / helica... 27 5.0
At4g34390.1 68417.m04885 extra-large guanine nucleotide binding ... 27 6.6
At1g61140.1 68414.m06888 SNF2 domain-containing protein / helica... 27 6.6
At5g67280.1 68418.m08483 leucine-rich repeat transmembrane prote... 27 8.8
At4g00060.1 68417.m00006 nucleotidyltransferase family protein c... 27 8.8
At1g71696.2 68414.m08283 carboxypeptidase D, putative similar to... 27 8.8
At1g71696.1 68414.m08284 carboxypeptidase D, putative similar to... 27 8.8
>At5g57815.1 68418.m07230 cytochrome c oxidase subunit 6b, putative
similar to subunit 6b of cytochrome c oxidase
[Arabidopsis thaliana] gi|6518353|dbj|BAA87883
Length = 78
Score = 104 bits (250), Expect = 3e-23
Identities = 41/71 (57%), Positives = 50/71 (70%)
Frame = +1
Query: 100 DLKTAPFDPRFPNQNQTRHCYQSYVDFHRCQKVRGEKYEPCYYFKRVYRSLCPNEWVDKW 279
+LKTAP D RFP NQTRHC+ Y++FHRC +GE+ C F + YR+LCP EWVDKW
Sbjct: 6 ELKTAPADFRFPTTNQTRHCFTRYIEFHRCTTAKGEESNDCERFAKYYRALCPGEWVDKW 65
Query: 280 DNQRAEGTFAG 312
+ QR GTF G
Sbjct: 66 NEQRESGTFPG 76
>At1g22450.1 68414.m02806 cytochrome c oxidase subunit 6b, putative
(COX6b) nearly identical to subunit 6b of cytochrome c
oxidase [Arabidopsis thaliana] GI:6518353
Length = 191
Score = 98.7 bits (235), Expect = 2e-21
Identities = 39/70 (55%), Positives = 49/70 (70%)
Frame = +1
Query: 103 LKTAPFDPRFPNQNQTRHCYQSYVDFHRCQKVRGEKYEPCYYFKRVYRSLCPNEWVDKWD 282
L+TAP D RFP NQTRHC+ YV++HRC +G+ C F + YRSLCP+EWVD+W+
Sbjct: 119 LETAPADFRFPTTNQTRHCFTRYVEYHRCVAAKGDDAPECDKFAKFYRSLCPSEWVDRWN 178
Query: 283 NQRAEGTFAG 312
QR GTF G
Sbjct: 179 EQRENGTFPG 188
>At4g28060.1 68417.m04025 cytochrome c oxidase subunit 6b, putative
similar to subunit 6b of cytochrome c oxidase
[Arabidopsis thaliana] gi|6518353|dbj|BAA87883
Length = 164
Score = 96.7 bits (230), Expect = 7e-21
Identities = 42/86 (48%), Positives = 52/86 (60%), Gaps = 6/86 (6%)
Frame = +1
Query: 73 MPEMIKSPADLKTAPFDPRFPNQNQTRHCYQSYVDFHR------CQKVRGEKYEPCYYFK 234
+ +K +LKTAP D RFP NQTRHC+ Y++FHR C +GE C F
Sbjct: 77 LARFLKPRIELKTAPADFRFPTTNQTRHCFTRYIEFHRYSCVIECTTAKGEDANECERFA 136
Query: 235 RVYRSLCPNEWVDKWDNQRAEGTFAG 312
+ YR+LCP EWVDKW+ QR GTF G
Sbjct: 137 KYYRALCPGEWVDKWNEQRETGTFPG 162
>At1g32710.1 68414.m04034 cytochrome c oxidase subunit VIb family
contains similarity to subunit 6b of cytochrome c
oxidase [Arabidopsis thaliana] GI:6518353; contains Pfam
profile PF02297: Cytochrome oxidase c subunit VIb
Length = 134
Score = 52.4 bits (120), Expect = 2e-07
Identities = 20/55 (36%), Positives = 30/55 (54%)
Frame = +1
Query: 112 APFDPRFPNQNQTRHCYQSYVDFHRCQKVRGEKYEPCYYFKRVYRSLCPNEWVDK 276
A + RFP N+TRHC+ ++ +H+C + G C + RS+CP E V K
Sbjct: 59 AAVEERFPVTNETRHCFNRFMQYHKCIEKNGRDANDCNNLRDYVRSICPEELVSK 113
>At2g34710.1 68415.m04263 homeobox-leucine zipper transcription
factor (HB-14) identical to homeodomain transcription
factor (ATHB-14)GP:3132474 GB:Y11122 [Arabidopsis
thaliana];
Length = 852
Score = 29.5 bits (63), Expect = 1.2
Identities = 13/45 (28%), Positives = 20/45 (44%)
Frame = +2
Query: 143 IRRGTATKVTWTSTVARKFAAKNTNHATISRECTGLSAPMSGSTS 277
+ + T T V W + K + ISR C+G++A G S
Sbjct: 183 LSKATGTAVDWVQMIGMKPGPDSIGIVAISRNCSGIAARACGLVS 227
>At5g54010.1 68418.m06718 glycosyltransferase family protein
contains Pfam profile: PF00201 UDP-glucoronosyl and
UDP-glucosyl transferase
Length = 453
Score = 29.1 bits (62), Expect = 1.6
Identities = 13/41 (31%), Positives = 18/41 (43%)
Frame = +2
Query: 173 WTSTVARKFAAKNTNHATISRECTGLSAPMSGSTSGTTSAP 295
W +AR++ K+ N TIS C +S S S P
Sbjct: 118 WIPEIAREYGVKSVNFITISAACVAISFVPGRSQDDLGSTP 158
>At4g08500.1 68417.m01401 mitogen-activated protein kinase kinase,
putative similar to mitogen-activated protein kinase
MEKK1 GP|1255448 [Arabidopsis thaliana]
Length = 608
Score = 29.1 bits (62), Expect = 1.6
Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Frame = +2
Query: 146 RRGTATKVTWTSTVARKFAAKNTNHATISRECTGLSA-PMSGSTSG-TTSAPKAPSPVGF 319
RRG +T + R+ AA+N N+ S C+ SA +S STS T + + P P F
Sbjct: 14 RRGGDKNITPVRRLERRDAARNINYDAAS--CSSSSAEDLSVSTSSLMTRSLEFPEPTSF 71
Query: 320 R 322
R
Sbjct: 72 R 72
>At4g00585.1 68417.m00082 expressed protein
Length = 88
Score = 28.7 bits (61), Expect = 2.2
Identities = 10/23 (43%), Positives = 12/23 (52%)
Frame = -1
Query: 313 YRRRCLRRAGCPTCRPTHWGRET 245
+R + G P CRP HW R T
Sbjct: 15 FRAKVWSMTGGPNCRPKHWRRNT 37
>At3g17205.1 68416.m02196 HECT-domain-containing protein /
ubiquitin-transferase family protein weak similarity to
ubiquitin-protein ligase 2 [Arabidopsis thaliana]
GI:7108523; contains Pfam profile PF00632: HECT-domain
(ubiquitin-transferase)
Length = 873
Score = 28.7 bits (61), Expect = 2.2
Identities = 10/38 (26%), Positives = 21/38 (55%)
Frame = +1
Query: 226 YFKRVYRSLCPNEWVDKWDNQRAEGTFAGRI*ILNVPD 339
+F R ++ L P EW+D ++ + +G + L++ D
Sbjct: 723 HFLRGFQQLIPKEWIDMFNEHELQVLISGSVDSLDIDD 760
>At2g19010.1 68415.m02219 GDSL-motif lipase/hydrolase family protein
similar to family II lipase EXL1 GI:15054382 from
[Arabidopsis thaliana]; contains Pfam profile PF00657:
GDSL-like Lipase/Acylhydrolase
Length = 344
Score = 28.7 bits (61), Expect = 2.2
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Frame = -1
Query: 379 SFDLIKTNRNKLKHRERLGSKSYRRRCLRRAGC-PTCRPTHWGRETCTLS*NSSMVRIFR 203
++ LI R+ LK+ RLG++ L + GC P +H + C+ N + V+IF
Sbjct: 181 AYSLIIIYRSHLKNLHRLGARKVAVFGLSQIGCTPKIMKSHSDGKICSREVNEA-VKIFN 239
Query: 202 REL 194
+ L
Sbjct: 240 KNL 242
>At1g30490.1 68414.m03727 homeobox-leucine zipper transcription
factor (HB-9) identical to HD-Zip protein GB:CAA71854
GI:2145358 from [Arabidopsis thaliana]
Length = 841
Score = 28.7 bits (61), Expect = 2.2
Identities = 12/43 (27%), Positives = 19/43 (44%)
Frame = +2
Query: 149 RGTATKVTWTSTVARKFAAKNTNHATISRECTGLSAPMSGSTS 277
+ T T V W + K + +SR C+G++A G S
Sbjct: 181 KATGTAVDWVQMIGMKPGPDSIGIVAVSRNCSGIAARACGLVS 223
>At1g01240.3 68414.m00041 expressed protein
Length = 331
Score = 27.9 bits (59), Expect = 3.8
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Frame = +2
Query: 95 PPTSKQHLSTHGSLTKIRRGTATKVTWTSTVAR-KF-AAKNTNHATISRECTGLSAPMSG 268
PP K H S H S + TA K W V + +F + + N +T S+ + +S+P S
Sbjct: 147 PPPQKLHKSIHSSSGEKGFKTAVKSPWKQGVWKDRFERSLSYNGSTESKNTSPMSSPRSD 206
Query: 269 STS 277
S
Sbjct: 207 DLS 209
>At1g01240.2 68414.m00040 expressed protein
Length = 331
Score = 27.9 bits (59), Expect = 3.8
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Frame = +2
Query: 95 PPTSKQHLSTHGSLTKIRRGTATKVTWTSTVAR-KF-AAKNTNHATISRECTGLSAPMSG 268
PP K H S H S + TA K W V + +F + + N +T S+ + +S+P S
Sbjct: 147 PPPQKLHKSIHSSSGEKGFKTAVKSPWKQGVWKDRFERSLSYNGSTESKNTSPMSSPRSD 206
Query: 269 STS 277
S
Sbjct: 207 DLS 209
>At1g01240.1 68414.m00039 expressed protein
Length = 331
Score = 27.9 bits (59), Expect = 3.8
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Frame = +2
Query: 95 PPTSKQHLSTHGSLTKIRRGTATKVTWTSTVAR-KF-AAKNTNHATISRECTGLSAPMSG 268
PP K H S H S + TA K W V + +F + + N +T S+ + +S+P S
Sbjct: 147 PPPQKLHKSIHSSSGEKGFKTAVKSPWKQGVWKDRFERSLSYNGSTESKNTSPMSSPRSD 206
Query: 269 STS 277
S
Sbjct: 207 DLS 209
>At5g55600.1 68418.m06932 agenet domain-containing protein /
bromo-adjacent homology (BAH) domain-containing protein
contains Pfam profile PF01426: BAH domain and PF05641:
Agenet domain
Length = 663
Score = 27.5 bits (58), Expect = 5.0
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +1
Query: 16 WLPFSIEINPRNG*IIISNMPEMIKSPADLKTAPFD 123
W+P P I +SN P + +P D+KTA FD
Sbjct: 432 WVPAFKSAMPDKLGIRLSNRPTIRPAPRDVKTAYFD 467
>At5g44220.1 68418.m05410 F-box family protein similar to unknown
protein (pir||T06086)
Length = 295
Score = 27.5 bits (58), Expect = 5.0
Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Frame = +1
Query: 64 ISNMPEMIKSPADLKTAPFDPRF--PNQNQTRHCYQSYVDFHRCQKVRGEKYEPC--YY 228
+++ E+I +P L P+ + P + TR + H C+ +R +K PC YY
Sbjct: 225 VTDAGELILAPISLPDPPYYVIYYDPQRQSTRKVVIRGITEHNCKLLRCKKRHPCILYY 283
>At1g50410.1 68414.m05650 SNF2 domain-containing protein / helicase
domain-containing protein / RING finger
domain-containing protein similar to transcription
factor RUSH-1alpha [Oryctolagus cuniculus] GI:1655930;
contains Pfam profiles PF00271: Helicase conserved
C-terminal domain, PF00176: SNF2 family N-terminal
domain, PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 981
Score = 27.5 bits (58), Expect = 5.0
Identities = 14/44 (31%), Positives = 18/44 (40%)
Frame = +2
Query: 152 GTATKVTWTSTVARKFAAKNTNHATISRECTGLSAPMSGSTSGT 283
GT KV W V + + ++R C GL A SGT
Sbjct: 464 GTLAKVGWFRVVLDEAQTIKNHRTQVARACCGLRAKRRWCLSGT 507
>At4g34390.1 68417.m04885 extra-large guanine nucleotide binding
protein, putative / G-protein, putative similar to
extra-large G-protein (XLG) [Arabidopsis thaliana]
GI:3201680; contains Pfam profile PF00503: G-protein
alpha subunit
Length = 861
Score = 27.1 bits (57), Expect = 6.6
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +1
Query: 70 NMPEMIKSPADLKTAPFDPRFPNQNQTRH 156
++PE +KSPAD + +P P + + H
Sbjct: 134 DVPEEVKSPADFRLSPSSPLSASAREEDH 162
>At1g61140.1 68414.m06888 SNF2 domain-containing protein / helicase
domain-containing protein / zinc finger protein-related
similar to ATPase [Homo sapiens] GI:531196; contains
Pfam profiles PF00271: Helicase conserved C-terminal
domain, PF00176: SNF2 family N-terminal domain, PF00097:
Zinc finger, C3HC4 type (RING finger)
Length = 1287
Score = 27.1 bits (57), Expect = 6.6
Identities = 18/63 (28%), Positives = 26/63 (41%)
Frame = +2
Query: 95 PPTSKQHLSTHGSLTKIRRGTATKVTWTSTVARKFAAKNTNHATISRECTGLSAPMSGST 274
PP SK+ S + + G KV+W V + + ++R C GL A
Sbjct: 769 PPDSKKKGSKKKKV-EFLSGPLAKVSWFRVVLDEAQSIKNYKTQVARACWGLRAKRRWCL 827
Query: 275 SGT 283
SGT
Sbjct: 828 SGT 830
>At5g67280.1 68418.m08483 leucine-rich repeat transmembrane protein
kinase, putative
Length = 751
Score = 26.6 bits (56), Expect = 8.8
Identities = 13/23 (56%), Positives = 14/23 (60%)
Frame = +2
Query: 242 TGLSAPMSGSTSGTTSAPKAPSP 310
TG SAP+ GS TTS PSP
Sbjct: 609 TGGSAPIFGSKRSTTSLEFGPSP 631
>At4g00060.1 68417.m00006 nucleotidyltransferase family protein
contains Pfam profile: PF01909 nucleotidyltransferase
domain
Length = 839
Score = 26.6 bits (56), Expect = 8.8
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +1
Query: 121 DPRFPNQNQTRHCYQSYVDFHRCQKVRGEKY 213
DP FP N R+C++ H+C K E Y
Sbjct: 777 DPLFPTNNVGRNCFR----IHQCIKAFSEAY 803
>At1g71696.2 68414.m08283 carboxypeptidase D, putative similar to
carboxypeptidase D [Anas platyrhynchos]
gi|2789654|gb|AAB96915
Length = 491
Score = 26.6 bits (56), Expect = 8.8
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +1
Query: 142 NQTRHCYQSYVDFHRCQKVRGEKYE 216
N T +Q+Y D+HR V G+KYE
Sbjct: 366 NYTVKAHQTYADYHRL-LVPGQKYE 389
>At1g71696.1 68414.m08284 carboxypeptidase D, putative similar to
carboxypeptidase D [Anas platyrhynchos]
gi|2789654|gb|AAB96915
Length = 422
Score = 26.6 bits (56), Expect = 8.8
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +1
Query: 142 NQTRHCYQSYVDFHRCQKVRGEKYE 216
N T +Q+Y D+HR V G+KYE
Sbjct: 297 NYTVKAHQTYADYHRL-LVPGQKYE 320
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,987,832
Number of Sequences: 28952
Number of extensions: 183848
Number of successful extensions: 529
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 516
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 528
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 829097472
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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