Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_F_O07
(866 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_05_0390 - 24593985-24595205,24595790-24595867,24596234-24596980 31 0.90
06_03_1315 + 29270679-29270908,29270992-29271394,29271633-292717... 31 1.2
12_02_1035 - 25570009-25571241,25571940-25573709,25573797-255751... 30 2.1
02_05_0366 - 28313190-28313601,28313759-28314225,28315044-283157... 30 2.1
02_01_0548 + 4035265-4035431,4035517-4035651,4035859-4036081,403... 30 2.8
08_02_1234 + 25437340-25437502,25437983-25438381,25441198-254416... 29 4.8
03_02_0961 + 12759701-12760054,12760294-12760420,12760719-127611... 29 4.8
10_08_0497 - 18336819-18337140,18337226-18337360,18337579-183376... 28 8.4
>05_05_0390 - 24593985-24595205,24595790-24595867,24596234-24596980
Length = 681
Score = 31.5 bits (68), Expect = 0.90
Identities = 17/52 (32%), Positives = 28/52 (53%)
Frame = +2
Query: 182 VAEETNNERIRTLKTDVSDVNSSKDAQDESRNSIDENKEKDHDNASSASTVE 337
V EE R K+D + SSK+ E+ +S DE ++K + +S+S+ E
Sbjct: 152 VKEEAEGGGDREDKSDEEESESSKEESSEASSSSDEEEDKRESSEASSSSDE 203
>06_03_1315 +
29270679-29270908,29270992-29271394,29271633-29271796,
29271943-29272013,29272360-29272559
Length = 355
Score = 31.1 bits (67), Expect = 1.2
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = -1
Query: 653 RGYQLIWHSAFVK*HTFTACKVTISALNNTFKLICTNH 540
RGY + H V FTAC + ++A+ TF L T H
Sbjct: 25 RGYLPLRHPPHVAPGRFTACLLAVAAVTTTFALALTLH 62
>12_02_1035 - 25570009-25571241,25571940-25573709,25573797-25575118,
25575208-25575555,25576540-25576633
Length = 1588
Score = 30.3 bits (65), Expect = 2.1
Identities = 17/49 (34%), Positives = 28/49 (57%)
Frame = +2
Query: 206 RIRTLKTDVSDVNSSKDAQDESRNSIDENKEKDHDNASSASTVEVLDDK 352
R RT++ D + S + +Q ES +I++ KE DH A + E+L +K
Sbjct: 993 RRRTMRRDTKLLKSGRKSQQESTVNIEQRKEIDH--AGLEKSNELLREK 1039
>02_05_0366 -
28313190-28313601,28313759-28314225,28315044-28315782,
28316548-28316615,28316693-28316757,28316922-28320162,
28320239-28320301,28320756-28320824,28321020-28321055,
28322035-28322280,28322531-28322569,28322695-28322816,
28322921-28323004,28323100-28323235,28323486-28323535,
28323620-28323756,28323863-28323951,28324847-28324954,
28325080-28325163,28325841-28325888,28326036-28326153,
28328262-28328347
Length = 2168
Score = 30.3 bits (65), Expect = 2.1
Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 5/66 (7%)
Frame = +2
Query: 170 QSEPVAEETNNERIRTLKTDVSDVNSSKDAQDESRNSIDENKEKDHDNA-----SSASTV 334
Q + A++ E + V DVN++ DES ++++ N++ D SA TV
Sbjct: 504 QKDGYADDDTTELENSPALSVEDVNANMPVDDESADTVEVNRDLSADTMKLTRDQSAETV 563
Query: 335 EVLDDK 352
+V +D+
Sbjct: 564 KVNNDQ 569
>02_01_0548 +
4035265-4035431,4035517-4035651,4035859-4036081,
4036282-4036468,4036627-4036811,4037435-4037572,
4037995-4038123
Length = 387
Score = 29.9 bits (64), Expect = 2.8
Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 5/69 (7%)
Frame = +2
Query: 158 VKITQSEPVAEETNNERIRTLKTDVSDVN-----SSKDAQDESRNSIDENKEKDHDNASS 322
V + S E I+ L VSDVN SS D E +D +++KD +++S
Sbjct: 113 VAVVASSAAWVEKYRHEIQFLVNKVSDVNHIKWRSSTDILKEE--GLDVSEQKDPESSSH 170
Query: 323 ASTVEVLDD 349
TVEV+++
Sbjct: 171 CGTVEVMEN 179
>08_02_1234 +
25437340-25437502,25437983-25438381,25441198-25441615,
25442353-25442542
Length = 389
Score = 29.1 bits (62), Expect = 4.8
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +2
Query: 188 EETNNERIRTLKTDVSDVNSSKDAQDESRNSIDENKEK 301
EE + +RTL V D N + D++RN+ +N+ K
Sbjct: 332 EENRKDCLRTLYAVVEDANKANKLADDARNAYVKNRLK 369
>03_02_0961 +
12759701-12760054,12760294-12760420,12760719-12761167,
12761369-12761590,12761672-12761980,12762092-12762430,
12762504-12762584,12762661-12762756,12762846-12763220,
12763400-12763531,12763962-12764132
Length = 884
Score = 29.1 bits (62), Expect = 4.8
Identities = 16/55 (29%), Positives = 27/55 (49%)
Frame = +2
Query: 185 AEETNNERIRTLKTDVSDVNSSKDAQDESRNSIDENKEKDHDNASSASTVEVLDD 349
AE+TN + K D D NS + + +S +D+N+ D+ + +LDD
Sbjct: 539 AEDTNKVTNKKQKLDDGDKNSDSEYESDSAQHLDDNEVHKIDDVQIGTA--LLDD 591
>10_08_0497 -
18336819-18337140,18337226-18337360,18337579-18337673,
18337759-18337845,18337923-18338129,18338209-18338535,
18338711-18338803,18338861-18339175,18339283-18339792,
18339889-18339960,18341209-18341256,18341427-18341551,
18341640-18341661
Length = 785
Score = 28.3 bits (60), Expect = 8.4
Identities = 16/56 (28%), Positives = 27/56 (48%)
Frame = +2
Query: 152 KRVKITQSEPVAEETNNERIRTLKTDVSDVNSSKDAQDESRNSIDENKEKDHDNAS 319
K+ K + + N++ + T + V D+ S D +DE D+N E D D+ S
Sbjct: 676 KKTKTPKEKSKKRAHNHDDVATEEDIVEDLILSSDEEDEDE---DKNMESDEDDGS 728
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,321,821
Number of Sequences: 37544
Number of extensions: 323620
Number of successful extensions: 764
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 734
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 764
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2432722788
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -