Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_F_O07
(866 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z75529-3|CAA99786.2| 1099|Caenorhabditis elegans Hypothetical pr... 29 4.3
U80447-3|AAB37807.2| 910|Caenorhabditis elegans Hypothetical pr... 29 4.3
AL031633-9|CAA21023.1| 636|Caenorhabditis elegans Hypothetical ... 29 4.3
U41558-2|AAK39245.2| 457|Caenorhabditis elegans Hypothetical pr... 29 5.7
U00051-14|AAM29692.1| 469|Caenorhabditis elegans Hypothetical p... 29 5.7
U00051-13|AAA91358.1| 491|Caenorhabditis elegans Hypothetical p... 29 5.7
U00044-7|AAA50675.1| 990|Caenorhabditis elegans Hypothetical pr... 29 5.7
Z48544-2|CAA88437.1| 766|Caenorhabditis elegans Hypothetical pr... 28 7.5
Z11505-7|CAA77581.1| 918|Caenorhabditis elegans Hypothetical pr... 28 7.5
U53180-3|AAA96284.1| 727|Caenorhabditis elegans Hypothetical pr... 28 7.5
AF038606-1|AAB92025.1| 59|Caenorhabditis elegans Hypothetical ... 28 7.5
AF016448-14|AAB65960.2| 304|Caenorhabditis elegans Hypothetical... 28 7.5
Z81115-5|CAB03295.1| 482|Caenorhabditis elegans Hypothetical pr... 28 9.9
Z49909-3|CAA90107.2| 603|Caenorhabditis elegans Hypothetical pr... 28 9.9
U97007-6|AAB52296.3| 468|Caenorhabditis elegans Hypothetical pr... 28 9.9
U39997-6|AAN60517.1| 942|Caenorhabditis elegans Clear protein 1... 28 9.9
U39997-5|AAN60515.1| 1409|Caenorhabditis elegans Clear protein 1... 28 9.9
U39997-4|AAN60516.1| 1444|Caenorhabditis elegans Clear protein 1... 28 9.9
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote... 28 9.9
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote... 28 9.9
AF047881-1|AAC27552.1| 942|Caenorhabditis elegans truncated CLR... 28 9.9
AF047880-1|AAC27551.1| 1409|Caenorhabditis elegans CLR-1 protein. 28 9.9
>Z75529-3|CAA99786.2| 1099|Caenorhabditis elegans Hypothetical protein
C44H9.4 protein.
Length = 1099
Score = 29.1 bits (62), Expect = 4.3
Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
Frame = +2
Query: 131 KMGNIKCKRVKITQSEPVAEETNNERI-RTLKTDVSDVNSSKDAQDE---SRNSIDENKE 298
+M IKC K + + E + I +T+KT SSK Q +RN+I +N
Sbjct: 1026 QMVQIKCTAKKSNKIQKNQNEGKHISISQTVKTKEDTEQSSKPQQRRRRRNRNNIGQNST 1085
Query: 299 KDHDNASSASTV 334
N++++ST+
Sbjct: 1086 NGRKNSATSSTI 1097
>U80447-3|AAB37807.2| 910|Caenorhabditis elegans Hypothetical
protein F55F8.3 protein.
Length = 910
Score = 29.1 bits (62), Expect = 4.3
Identities = 17/47 (36%), Positives = 26/47 (55%)
Frame = +2
Query: 158 VKITQSEPVAEETNNERIRTLKTDVSDVNSSKDAQDESRNSIDENKE 298
VKI QS+ ++ E + DVSD + +D +DES S DE+ +
Sbjct: 862 VKIRQSKKSVKKEEEE-----EEDVSDESDDEDIEDESAGSDDEDSD 903
>AL031633-9|CAA21023.1| 636|Caenorhabditis elegans Hypothetical
protein Y39A1A.12 protein.
Length = 636
Score = 29.1 bits (62), Expect = 4.3
Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 10/67 (14%)
Frame = +2
Query: 143 IKCKRVKIT---QSEPVAEETNNERIR-----TLKTDVSDVNSSKDA--QDESRNSIDEN 292
+K + +IT +S P + ++ R+R T K+D S +SS D+ +DE + DE
Sbjct: 17 VKRRSTRITNLPKSAPKIVKRSSVRLRGAPQCTYKSDSSSSSSSSDSDGEDEYAATKDEL 76
Query: 293 KEKDHDN 313
K DHDN
Sbjct: 77 KAVDHDN 83
>U41558-2|AAK39245.2| 457|Caenorhabditis elegans Hypothetical
protein K02B2.1 protein.
Length = 457
Score = 28.7 bits (61), Expect = 5.7
Identities = 15/78 (19%), Positives = 37/78 (47%), Gaps = 4/78 (5%)
Frame = +2
Query: 125 FCKMGNIKCKRVKITQSEPVAEETNNERIRTLKTDVSDVNSSKDAQDESRNSIDENKEK- 301
FCK ++C ++ +P + N ++ D + +++ A+++ N I+ K++
Sbjct: 139 FCKKQRLRCFFIESVCDDPAIIDCNVTDVKVNSPDYKGLMTAEQAKEDFMNRIENYKKQY 198
Query: 302 ---DHDNASSASTVEVLD 346
D S S ++V++
Sbjct: 199 EPLDESEDESLSFIKVIN 216
>U00051-14|AAM29692.1| 469|Caenorhabditis elegans Hypothetical
protein F42G9.1b protein.
Length = 469
Score = 28.7 bits (61), Expect = 5.7
Identities = 16/74 (21%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Frame = +2
Query: 131 KMGNIKCKRVKI-TQSEPVAEETNNERIRTLKTDVSDVNSSKDAQDESRNSIDENKEKDH 307
K G +C++ I ++++ ET+ E + + V V + ++ +D+S ++E+D
Sbjct: 200 KKGQKRCQKSPIQSEAKKSKSETDAETAPSSSSGVDGVATEEEDEDDSDKEFVADEEEDD 259
Query: 308 DNASSASTVEVLDD 349
++A + E + D
Sbjct: 260 EDAEDEQSDEEMVD 273
>U00051-13|AAA91358.1| 491|Caenorhabditis elegans Hypothetical
protein F42G9.1a protein.
Length = 491
Score = 28.7 bits (61), Expect = 5.7
Identities = 16/74 (21%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Frame = +2
Query: 131 KMGNIKCKRVKI-TQSEPVAEETNNERIRTLKTDVSDVNSSKDAQDESRNSIDENKEKDH 307
K G +C++ I ++++ ET+ E + + V V + ++ +D+S ++E+D
Sbjct: 222 KKGQKRCQKSPIQSEAKKSKSETDAETAPSSSSGVDGVATEEEDEDDSDKEFVADEEEDD 281
Query: 308 DNASSASTVEVLDD 349
++A + E + D
Sbjct: 282 EDAEDEQSDEEMVD 295
>U00044-7|AAA50675.1| 990|Caenorhabditis elegans Hypothetical
protein K04C2.2 protein.
Length = 990
Score = 28.7 bits (61), Expect = 5.7
Identities = 14/40 (35%), Positives = 25/40 (62%)
Frame = +2
Query: 227 DVSDVNSSKDAQDESRNSIDENKEKDHDNASSASTVEVLD 346
D S++ S + DE+ +S D+++E+D D + A E+LD
Sbjct: 597 DESEIPSG-NGDDEASDSDDDDEEEDDDEGNEAVDQELLD 635
>Z48544-2|CAA88437.1| 766|Caenorhabditis elegans Hypothetical
protein ZK945.3 protein.
Length = 766
Score = 28.3 bits (60), Expect = 7.5
Identities = 17/56 (30%), Positives = 27/56 (48%)
Frame = +2
Query: 146 KCKRVKITQSEPVAEETNNERIRTLKTDVSDVNSSKDAQDESRNSIDENKEKDHDN 313
K K VK+ Q E EE + + +K + +S+ A DE+ S+DE D +
Sbjct: 145 KVKTVKVAQEEE--EEHSAPPKKKVKVNAEKAVASEPADDENLESVDEQAGGDESH 198
>Z11505-7|CAA77581.1| 918|Caenorhabditis elegans Hypothetical
protein F59B2.12 protein.
Length = 918
Score = 28.3 bits (60), Expect = 7.5
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = +2
Query: 185 AEETNNERIRTLKT-DVSDVNSSKDAQDESRNSIDENKEKDH 307
AE NN TL + D + SS ++ S S+DEN K H
Sbjct: 409 AESRNNTAADTLDSVDANGTVSSSHSKSASGTSLDENHNKTH 450
>U53180-3|AAA96284.1| 727|Caenorhabditis elegans Hypothetical
protein D1014.5 protein.
Length = 727
Score = 28.3 bits (60), Expect = 7.5
Identities = 14/56 (25%), Positives = 30/56 (53%)
Frame = +2
Query: 170 QSEPVAEETNNERIRTLKTDVSDVNSSKDAQDESRNSIDENKEKDHDNASSASTVE 337
+SE +NNE T + V+D SK+A+ + ++ EK+ ++ ++ ++ E
Sbjct: 194 ESESGTTVSNNEETTTTENKVADEAPSKEAESIQASQDSDHVEKEGESETTTTSDE 249
>AF038606-1|AAB92025.1| 59|Caenorhabditis elegans Hypothetical
protein C04C3.4 protein.
Length = 59
Score = 28.3 bits (60), Expect = 7.5
Identities = 10/31 (32%), Positives = 20/31 (64%)
Frame = +3
Query: 438 HTFSNAIYFVSANLLFSKQNIFRFSKVTINL 530
H +N+ F+ + +F+KQN+++F IN+
Sbjct: 29 HRINNSTKFIFSFFMFNKQNLWQFFSFCINI 59
>AF016448-14|AAB65960.2| 304|Caenorhabditis elegans Hypothetical
protein F41E6.12 protein.
Length = 304
Score = 28.3 bits (60), Expect = 7.5
Identities = 14/33 (42%), Positives = 16/33 (48%)
Frame = +1
Query: 355 KCFKNVDVFKKSIQQF*RPKDYFN*FFCTHFRT 453
KC + +K F PKD FN CTHF T
Sbjct: 263 KCEDVLPEARKVCNPFPNPKDTFNLLRCTHFLT 295
>Z81115-5|CAB03295.1| 482|Caenorhabditis elegans Hypothetical
protein T05D4.5 protein.
Length = 482
Score = 27.9 bits (59), Expect = 9.9
Identities = 14/60 (23%), Positives = 26/60 (43%)
Frame = +2
Query: 134 MGNIKCKRVKITQSEPVAEETNNERIRTLKTDVSDVNSSKDAQDESRNSIDENKEKDHDN 313
M +K +R + EE + K ++ KDA+DE + + K+KD ++
Sbjct: 387 MSTLKMERDERRTKRKEEEEKKKKDAEEKKKKDAEEKKKKDAEDEKKKDAGDEKKKDAED 446
>Z49909-3|CAA90107.2| 603|Caenorhabditis elegans Hypothetical
protein C14A4.3 protein.
Length = 603
Score = 27.9 bits (59), Expect = 9.9
Identities = 20/78 (25%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Frame = +3
Query: 390 YSAILKTQRLF*LIFLHTFSNAIYFVSANLLF-SKQNIFRFSKVTINLLCIMISAYQFEC 566
YS + + F I+LH +++ ANL +K +F ++TI L C++ Y F+
Sbjct: 100 YSPVYAIRSYF-YIYLHYIPASLF---ANLFGDTKIVVFTLIRLTIGLFCLLGEYYAFDA 155
Query: 567 II*CRYCDLACSKRVLFY 620
I C+ ++A + + +
Sbjct: 156 I--CKKINIATGRFFILF 171
>U97007-6|AAB52296.3| 468|Caenorhabditis elegans Hypothetical
protein ZC196.4 protein.
Length = 468
Score = 27.9 bits (59), Expect = 9.9
Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Frame = +2
Query: 167 TQSEPVAEETNNERIRTLKTDVSDVNSSKDAQDESRN-SIDENKEKDHDNASSASTVE 337
T+ P+ E+ N + K+ +++ S D QDES+N S++ + N + T+E
Sbjct: 68 TEEVPLDEQINISFVNCTKS--TEMQISLDLQDESKNISVETELQDSSSNEKTELTIE 123
>U39997-6|AAN60517.1| 942|Caenorhabditis elegans Clear protein 1,
isoform c protein.
Length = 942
Score = 27.9 bits (59), Expect = 9.9
Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = -3
Query: 534 IEDLW-LLWKNEIYFVLKITNLH*QNRLRSKMCAK 433
I D W ++W+ E Y ++ + NL +NR + CAK
Sbjct: 871 IGDFWRMVWEQESYLIVMVANLTEKNR---QQCAK 902
>U39997-5|AAN60515.1| 1409|Caenorhabditis elegans Clear protein 1,
isoform a protein.
Length = 1409
Score = 27.9 bits (59), Expect = 9.9
Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = -3
Query: 534 IEDLW-LLWKNEIYFVLKITNLH*QNRLRSKMCAK 433
I D W ++W+ E Y ++ + NL +NR + CAK
Sbjct: 871 IGDFWRMVWEQESYLIVMVANLTEKNR---QQCAK 902
>U39997-4|AAN60516.1| 1444|Caenorhabditis elegans Clear protein 1,
isoform b protein.
Length = 1444
Score = 27.9 bits (59), Expect = 9.9
Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = -3
Query: 534 IEDLW-LLWKNEIYFVLKITNLH*QNRLRSKMCAK 433
I D W ++W+ E Y ++ + NL +NR + CAK
Sbjct: 906 IGDFWRMVWEQESYLIVMVANLTEKNR---QQCAK 937
>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
protein.
Length = 18519
Score = 27.9 bits (59), Expect = 9.9
Identities = 16/59 (27%), Positives = 33/59 (55%)
Frame = +2
Query: 173 SEPVAEETNNERIRTLKTDVSDVNSSKDAQDESRNSIDENKEKDHDNASSASTVEVLDD 349
+EP A+ET ++I KT+ SD + S+ + +S + + KE+D + S +++ +
Sbjct: 13147 TEP-ADETPKKKIIKKKTEKSDSSISQKSATDS-EKVSKQKEQDEPTKPAVSETQMVTE 13203
>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
protein.
Length = 18534
Score = 27.9 bits (59), Expect = 9.9
Identities = 16/59 (27%), Positives = 33/59 (55%)
Frame = +2
Query: 173 SEPVAEETNNERIRTLKTDVSDVNSSKDAQDESRNSIDENKEKDHDNASSASTVEVLDD 349
+EP A+ET ++I KT+ SD + S+ + +S + + KE+D + S +++ +
Sbjct: 13147 TEP-ADETPKKKIIKKKTEKSDSSISQKSATDS-EKVSKQKEQDEPTKPAVSETQMVTE 13203
>AF047881-1|AAC27552.1| 942|Caenorhabditis elegans truncated CLR-1
protein.
Length = 942
Score = 27.9 bits (59), Expect = 9.9
Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = -3
Query: 534 IEDLW-LLWKNEIYFVLKITNLH*QNRLRSKMCAK 433
I D W ++W+ E Y ++ + NL +NR + CAK
Sbjct: 871 IGDFWRMVWEQESYLIVMVANLTEKNR---QQCAK 902
>AF047880-1|AAC27551.1| 1409|Caenorhabditis elegans CLR-1 protein.
Length = 1409
Score = 27.9 bits (59), Expect = 9.9
Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = -3
Query: 534 IEDLW-LLWKNEIYFVLKITNLH*QNRLRSKMCAK 433
I D W ++W+ E Y ++ + NL +NR + CAK
Sbjct: 871 IGDFWRMVWEQESYLIVMVANLTEKNR---QQCAK 902
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,931,559
Number of Sequences: 27780
Number of extensions: 367071
Number of successful extensions: 1196
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1193
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2171433726
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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