Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_O06
         (572 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L15188-7|AAA27951.1|  161|Caenorhabditis elegans Ribosomal prote...   185   2e-47
Z83244-6|CAD18877.1|  502|Caenorhabditis elegans Hypothetical pr...    33   0.11 
Z83244-5|CAB54315.1|  568|Caenorhabditis elegans Hypothetical pr...    33   0.11 
Z83244-4|CAB54314.1|  562|Caenorhabditis elegans Hypothetical pr...    33   0.11 
U00047-4|AAA50690.1|  825|Caenorhabditis elegans Hypothetical pr...    29   1.8  
AC084197-45|AAK68589.4|  751|Caenorhabditis elegans Hypothetical...    29   1.8  
AL132853-5|CAB60443.1|  279|Caenorhabditis elegans Hypothetical ...    29   2.3  
Z46267-9|CAA86427.2|  889|Caenorhabditis elegans Hypothetical pr...    29   3.1  
Z92775-2|CAB07162.2|  382|Caenorhabditis elegans Hypothetical pr...    28   4.1  
Z92775-1|CAB07161.2|  379|Caenorhabditis elegans Hypothetical pr...    28   4.1  
Z78016-1|CAB01439.1|  276|Caenorhabditis elegans Hypothetical pr...    28   4.1  
AC026301-1|AAK68897.1|  280|Caenorhabditis elegans Hypothetical ...    28   4.1  
U64859-9|AAC69090.1|  378|Caenorhabditis elegans Activated in bl...    27   7.2  
U64859-8|AAC69096.1|  378|Caenorhabditis elegans Prion-like-(q/n...    27   7.2  
Z81526-4|CAB04267.2|  430|Caenorhabditis elegans Hypothetical pr...    27   9.5  
AL110490-7|CAD59175.1|  533|Caenorhabditis elegans Hypothetical ...    27   9.5  
AL110490-6|CAB54442.2|  687|Caenorhabditis elegans Hypothetical ...    27   9.5  

>L15188-7|AAA27951.1|  161|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 21 protein.
          Length = 161

 Score =  185 bits (450), Expect = 2e-47
 Identities = 89/148 (60%), Positives = 109/148 (73%), Gaps = 2/148 (1%)
 Frame = +1

Query: 94  LFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGKTGRVYNVTAHALG 273
           +FAR FR HG   LSTY   YK GD+VDI+ NGA QKGMP K YHG+TGR++NVT  A+G
Sbjct: 14  MFARDFRKHGVEHLSTYYTQYKRGDLVDIKTNGAFQKGMPFKAYHGRTGRIFNVTRGAVG 73

Query: 274 VIVNKRVRGRIIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTV-NLKRQP 450
           +IVNKRVRG I+PKRINIR+EH+K SKCR DFL RVK N+   K AK+AG+ V  LKR P
Sbjct: 74  IIVNKRVRGNILPKRINIRIEHIKPSKCRTDFLNRVKSNDEKRKAAKSAGQPVPALKRLP 133

Query: 451 APPKAAH-IVSGTEKPVLLAPIPYEFVA 531
             P+ AH + +   +P LLAP+ +E VA
Sbjct: 134 VAPRGAHTVTTQNNEPELLAPLRFEIVA 161



 Score = 27.1 bits (57), Expect = 9.5
 Identities = 11/14 (78%), Positives = 12/14 (85%)
 Frame = +3

Query: 54 MTNSKGYRRGTRXL 95
          MTNSKG RRGTR +
Sbjct: 1  MTNSKGLRRGTRYM 14


>Z83244-6|CAD18877.1|  502|Caenorhabditis elegans Hypothetical
           protein W06F12.2c protein.
          Length = 502

 Score = 33.5 bits (73), Expect = 0.11
 Identities = 18/46 (39%), Positives = 24/46 (52%)
 Frame = -1

Query: 239 PVFPWYTLCGIPF*TAPLPLMSTMSPTLYTFMYVESGIVPCVRNLR 102
           PVFP Y+  G+P    PLP     +P     M V+  + P V+NLR
Sbjct: 226 PVFPSYSRAGVPQTPIPLPPTQINTPYPIDPMEVQFTVQPKVKNLR 271


>Z83244-5|CAB54315.1|  568|Caenorhabditis elegans Hypothetical
           protein W06F12.2b protein.
          Length = 568

 Score = 33.5 bits (73), Expect = 0.11
 Identities = 18/46 (39%), Positives = 24/46 (52%)
 Frame = -1

Query: 239 PVFPWYTLCGIPF*TAPLPLMSTMSPTLYTFMYVESGIVPCVRNLR 102
           PVFP Y+  G+P    PLP     +P     M V+  + P V+NLR
Sbjct: 226 PVFPSYSRAGVPQTPIPLPPTQINTPYPIDPMEVQFTVQPKVKNLR 271


>Z83244-4|CAB54314.1|  562|Caenorhabditis elegans Hypothetical
           protein W06F12.2a protein.
          Length = 562

 Score = 33.5 bits (73), Expect = 0.11
 Identities = 18/46 (39%), Positives = 24/46 (52%)
 Frame = -1

Query: 239 PVFPWYTLCGIPF*TAPLPLMSTMSPTLYTFMYVESGIVPCVRNLR 102
           PVFP Y+  G+P    PLP     +P     M V+  + P V+NLR
Sbjct: 220 PVFPSYSRAGVPQTPIPLPPTQINTPYPIDPMEVQFTVQPKVKNLR 265


>U00047-4|AAA50690.1|  825|Caenorhabditis elegans Hypothetical
           protein ZK418.6 protein.
          Length = 825

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +1

Query: 433 NLKRQPAPPKAAHIVSGTE 489
           NL+R+PAPPK  H+ S  E
Sbjct: 462 NLRRRPAPPKQNHVASPAE 480


>AC084197-45|AAK68589.4|  751|Caenorhabditis elegans Hypothetical
           protein Y73B6BL.1 protein.
          Length = 751

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 16/46 (34%), Positives = 20/46 (43%)
 Frame = +3

Query: 156 QSWRHCRHQRQWCSSKGYATQSIPWKDRSRVQRYCSCSRCDCQQAC 293
           Q  RHC  Q   C S  Y      W+ RSRV    +C+  +  Q C
Sbjct: 366 QPVRHCSEQDATCDSPFYWCDMKLWRCRSRVVYGGNCTGYEGTQIC 411


>AL132853-5|CAB60443.1|  279|Caenorhabditis elegans Hypothetical
           protein Y80D3A.9 protein.
          Length = 279

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -3

Query: 498 DGFLSSTDDVGSFRGSWLSLQVDGLAGSL 412
           DG LS  D+    RG+WL +   G  G L
Sbjct: 39  DGMLSGVDEKDVARGTWLGMDAHGKVGML 67


>Z46267-9|CAA86427.2|  889|Caenorhabditis elegans Hypothetical
           protein F49E2.5d protein.
          Length = 889

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
 Frame = +1

Query: 331 VEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVN-LKRQPAPPKAAHIVSGTEKPVLLA 507
           VE+V          +  K+N++  K++++   T   ++  PAPP+   +V   EKPV  A
Sbjct: 361 VENVVEKSTTPPATENKKKNKKDKKKSESEKVTEQPVESAPAPPQVEQVVEKVEKPV--A 418

Query: 508 PI 513
           P+
Sbjct: 419 PV 420


>Z92775-2|CAB07162.2|  382|Caenorhabditis elegans Hypothetical
           protein C06H5.2 protein.
          Length = 382

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 18/52 (34%), Positives = 28/52 (53%)
 Frame = -3

Query: 393 LILFDSLKEVLSALGVLDMLNTDIDALRYNPSANTLVDNHTESMSSNVVHAT 238
           LILFD+LK VL ++GVL   +  I+ L     A  L   +TE +    + ++
Sbjct: 200 LILFDALKNVLQSVGVLTTKSVLINWLPSVQIAEILEHFNTEILEDLTIKSS 251


>Z92775-1|CAB07161.2|  379|Caenorhabditis elegans Hypothetical
           protein C06H5.1 protein.
          Length = 379

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 18/52 (34%), Positives = 28/52 (53%)
 Frame = -3

Query: 393 LILFDSLKEVLSALGVLDMLNTDIDALRYNPSANTLVDNHTESMSSNVVHAT 238
           LILFD+LK VL ++GVL   +  I+ L     A  L   +TE +    + ++
Sbjct: 200 LILFDALKNVLQSVGVLTTKSVLINWLPSVQIAEILEHFNTEILEDLTIKSS 251


>Z78016-1|CAB01439.1|  276|Caenorhabditis elegans Hypothetical
           protein R186.1 protein.
          Length = 276

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -3

Query: 498 DGFLSSTDDVGSFRGSWLSLQVDGLAGSL 412
           DG LS  D   + RG+WL L  +G  G +
Sbjct: 39  DGILSGVDKQENARGTWLGLNENGRIGMM 67


>AC026301-1|AAK68897.1|  280|Caenorhabditis elegans Hypothetical
           protein Y54F10BM.6 protein.
          Length = 280

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = +3

Query: 231 KDRSRVQR-YCSCSRCDCQQACSRKDYTEAHQYPC*ACQ 344
           +D SR  R Y +C    C+ AC   D+T+  +  C  C+
Sbjct: 156 QDVSRTPRVYSTCGHTSCE-ACVESDFTQKKRVVCLTCE 193


>U64859-9|AAC69090.1|  378|Caenorhabditis elegans Activated in
           blocked unfolded proteinresponse protein 9 protein.
          Length = 378

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 20/68 (29%), Positives = 25/68 (36%)
 Frame = +3

Query: 249 QRYCSCSRCDCQQACSRKDYTEAHQYPC*ACQALQVQTRLP*ESQRE*EATEGSQGCRQD 428
           Q  CSC +    Q+CS +      Q P  +C   Q Q     + Q    A    Q CRQ 
Sbjct: 34  QSQCSCQQVQQTQSCSCQSAPVQQQAP--SCSCAQPQQTQTVQVQSTQCAPACQQSCRQQ 91

Query: 429 RQPEETAS 452
            Q     S
Sbjct: 92  CQSAPAVS 99


>U64859-8|AAC69096.1|  378|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 57
           protein.
          Length = 378

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 20/68 (29%), Positives = 25/68 (36%)
 Frame = +3

Query: 249 QRYCSCSRCDCQQACSRKDYTEAHQYPC*ACQALQVQTRLP*ESQRE*EATEGSQGCRQD 428
           Q  CSC +    Q+CS +      Q P  +C   Q Q     + Q    A    Q CRQ 
Sbjct: 34  QSQCSCQQVQQTQSCSCQSAPVQQQAP--SCSCAQPQQTQTVQVQSTQCAPACQQSCRQQ 91

Query: 429 RQPEETAS 452
            Q     S
Sbjct: 92  CQSAPAVS 99


>Z81526-4|CAB04267.2|  430|Caenorhabditis elegans Hypothetical
           protein F33H2.7 protein.
          Length = 430

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 12/37 (32%), Positives = 16/37 (43%), Gaps = 4/37 (10%)
 Frame = +3

Query: 234 DRSRVQRYCSCSRC----DCQQACSRKDYTEAHQYPC 332
           D S+     +C  C     C   C RKD+   HQ+ C
Sbjct: 31  DSSQETEILTCDDCLAVSYCTLKCQRKDWKSCHQFEC 67


>AL110490-7|CAD59175.1|  533|Caenorhabditis elegans Hypothetical
           protein Y48B6A.6b protein.
          Length = 533

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 16/72 (22%), Positives = 29/72 (40%)
 Frame = +1

Query: 307 IPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQPAPPKAAHIVSGT 486
           +P     R+  V+  +  ++  +R KE+E      +   + + + R P PP    I    
Sbjct: 207 LPPTPPARITSVRSDESIEEEERRRKESEETASFEELEAEIMRISRSPVPPPVLSIPPPP 266

Query: 487 EKPVLLAPIPYE 522
              + L  IP E
Sbjct: 267 PPNIPLPTIPQE 278


>AL110490-6|CAB54442.2|  687|Caenorhabditis elegans Hypothetical
           protein Y48B6A.6a protein.
          Length = 687

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 16/72 (22%), Positives = 29/72 (40%)
 Frame = +1

Query: 307 IPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQPAPPKAAHIVSGT 486
           +P     R+  V+  +  ++  +R KE+E      +   + + + R P PP    I    
Sbjct: 207 LPPTPPARITSVRSDESIEEEERRRKESEETASFEELEAEIMRISRSPVPPPVLSIPPPP 266

Query: 487 EKPVLLAPIPYE 522
              + L  IP E
Sbjct: 267 PPNIPLPTIPQE 278


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,948,846
Number of Sequences: 27780
Number of extensions: 267887
Number of successful extensions: 995
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 944
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 994
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1184216096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)