Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_F_O06
(572 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g57860.1 68414.m06565 60S ribosomal protein L21 similar to 60... 171 2e-43
At1g57660.1 68414.m06543 60S ribosomal protein L21 (RPL21E) simi... 171 2e-43
At1g09690.1 68414.m01088 60S ribosomal protein L21 (RPL21C) Simi... 171 4e-43
At1g09590.1 68414.m01076 60S ribosomal protein L21 (RPL21A) Simi... 171 4e-43
At5g05900.1 68418.m00651 UDP-glucoronosyl/UDP-glucosyl transfera... 32 0.31
At5g05890.1 68418.m00649 UDP-glucoronosyl/UDP-glucosyl transfera... 31 0.72
At1g68130.1 68414.m07782 zinc finger (C2H2 type) family protein ... 29 1.7
At4g24350.1 68417.m03494 phosphorylase family protein contains P... 29 2.2
At4g02670.1 68417.m00362 zinc finger (C2H2 type) family protein ... 29 2.2
At3g45260.1 68416.m04887 zinc finger (C2H2 type) family protein ... 29 2.2
At5g66730.1 68418.m08412 zinc finger (C2H2 type) family protein ... 29 2.9
At3g50700.1 68416.m05547 zinc finger (C2H2 type) family protein ... 29 2.9
At2g02080.1 68415.m00144 zinc finger (C2H2 type) family protein ... 29 2.9
At2g02070.1 68415.m00143 zinc finger (C2H2 type) family protein ... 29 2.9
At1g14580.1 68414.m01734 zinc finger (C2H2 type) family protein ... 29 2.9
At5g18830.2 68418.m02238 squamosa promoter-binding protein-like ... 28 3.8
At5g18830.1 68418.m02237 squamosa promoter-binding protein-like ... 28 3.8
At4g26610.1 68417.m03835 protein kinase, putative similar to pro... 28 3.8
At2g43900.1 68415.m05457 endonuclease/exonuclease/phosphatase fa... 28 3.8
At2g43030.1 68415.m05340 ribosomal protein L3 family protein con... 28 3.8
At2g13150.1 68415.m01450 expressed protein contains a bZIP trans... 28 3.8
At5g05880.1 68418.m00647 UDP-glucoronosyl/UDP-glucosyl transfera... 28 5.1
At1g20020.1 68414.m02507 ferredoxin--NADP(+) reductase, putative... 28 5.1
At5g41220.1 68418.m05009 glutathione S-transferase, putative sim... 27 6.7
At4g31490.1 68417.m04473 coatomer beta subunit, putative / beta-... 27 6.7
At3g45880.1 68416.m04965 hypothetical protein 27 6.7
At3g02280.1 68416.m00209 flavodoxin family protein low similarit... 27 6.7
At1g62330.1 68414.m07033 expressed protein contains Pfam PF03138... 27 6.7
At5g44160.1 68418.m05404 zinc finger (C2H2 type) family protein ... 27 8.9
At5g41240.1 68418.m05011 glutathione S-transferase, putative sim... 27 8.9
At5g03150.1 68418.m00263 zinc finger (C2H2 type) family protein ... 27 8.9
At4g31670.1 68417.m04497 ubiquitin carboxyl-terminal hydrolase f... 27 8.9
At3g63530.1 68416.m07156 zinc finger (C3HC4-type RING finger) fa... 27 8.9
At1g03840.1 68414.m00365 zinc finger (C2H2 type) family protein ... 27 8.9
>At1g57860.1 68414.m06565 60S ribosomal protein L21 similar to 60S
ribosomal protein L21 GI:3885884 from [Oryza sativa]
Length = 164
Score = 171 bits (417), Expect = 2e-43
Identities = 79/145 (54%), Positives = 106/145 (73%)
Frame = +1
Query: 94 LFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGKTGRVYNVTAHALG 273
LFAR FR G IPLSTY++ +KVGD VD++ NGA+ KGMPHK YHG+TGR++NVT A+G
Sbjct: 14 LFARPFRKKGYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGRTGRIWNVTKRAVG 73
Query: 274 VIVNKRVRGRIIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQPA 453
V VNK++ RII KRI++RVEHV+ S+C ++F R K+N+ L +AKA G+T++ KRQP
Sbjct: 74 VEVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKQNDVLKADAKARGETISTKRQPK 133
Query: 454 PPKAAHIVSGTEKPVLLAPIPYEFV 528
PK +V G + PIPY+ V
Sbjct: 134 GPKPGFMVEGMTLET-VTPIPYDVV 157
>At1g57660.1 68414.m06543 60S ribosomal protein L21 (RPL21E) similar
to 60S ribosomal protein L21 GB:Q43291 GI:2851508 from
[Arabidopsis thaliana]
Length = 164
Score = 171 bits (417), Expect = 2e-43
Identities = 79/145 (54%), Positives = 106/145 (73%)
Frame = +1
Query: 94 LFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGKTGRVYNVTAHALG 273
LFAR FR G IPLSTY++ +KVGD VD++ NGA+ KGMPHK YHG+TGR++NVT A+G
Sbjct: 14 LFARPFRKKGYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGRTGRIWNVTKRAVG 73
Query: 274 VIVNKRVRGRIIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQPA 453
V VNK++ RII KRI++RVEHV+ S+C ++F R K+N+ L +AKA G+T++ KRQP
Sbjct: 74 VEVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKQNDVLKADAKARGETISTKRQPK 133
Query: 454 PPKAAHIVSGTEKPVLLAPIPYEFV 528
PK +V G + PIPY+ V
Sbjct: 134 GPKPGFMVEGMTLET-VTPIPYDVV 157
>At1g09690.1 68414.m01088 60S ribosomal protein L21 (RPL21C) Similar
to ribosomal protein L21 (gb|L38826). ESTs
gb|AA395597,gb|ATTS5197 come from this gene
Length = 164
Score = 171 bits (415), Expect = 4e-43
Identities = 79/145 (54%), Positives = 105/145 (72%)
Frame = +1
Query: 94 LFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGKTGRVYNVTAHALG 273
LFAR FR G IPLSTY++ +KVGD VD++ NGA+ KGMPHK YHG+TGR++NVT A+G
Sbjct: 14 LFARPFRKKGYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGRTGRIWNVTKRAVG 73
Query: 274 VIVNKRVRGRIIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQPA 453
V VNK++ RII KRI++RVEHV+ S+C ++F R K+N+ L AKA G+T++ KRQP
Sbjct: 74 VEVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKKNDELKAAAKANGETISTKRQPK 133
Query: 454 PPKAAHIVSGTEKPVLLAPIPYEFV 528
PK +V G + PIPY+ V
Sbjct: 134 GPKPGFMVEGMTLET-VTPIPYDVV 157
>At1g09590.1 68414.m01076 60S ribosomal protein L21 (RPL21A) Similar
to L21 family of ribosomal protein; amino acid sequence
is identical to F21M12.8
Length = 164
Score = 171 bits (415), Expect = 4e-43
Identities = 79/145 (54%), Positives = 105/145 (72%)
Frame = +1
Query: 94 LFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGKTGRVYNVTAHALG 273
LFAR FR G IPLSTY++ +KVGD VD++ NGA+ KGMPHK YHG+TGR++NVT A+G
Sbjct: 14 LFARPFRKKGYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGRTGRIWNVTKRAVG 73
Query: 274 VIVNKRVRGRIIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQPA 453
V VNK++ RII KRI++RVEHV+ S+C ++F R K+N+ L AKA G+T++ KRQP
Sbjct: 74 VEVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKKNDELKAAAKANGETISTKRQPK 133
Query: 454 PPKAAHIVSGTEKPVLLAPIPYEFV 528
PK +V G + PIPY+ V
Sbjct: 134 GPKPGFMVEGMTLET-VTPIPYDVV 157
>At5g05900.1 68418.m00651 UDP-glucoronosyl/UDP-glucosyl transferase
family protein contains Pfam profile: PF00201
UDP-glucoronosyl and UDP-glucosyl transferase
Length = 450
Score = 31.9 bits (69), Expect = 0.31
Identities = 20/65 (30%), Positives = 28/65 (43%)
Frame = -3
Query: 321 DALRYNPSANTLVDNHTESMSSNVVHATCLSMVYFVWHTLLNCTIASDVYNVSNFVHFHV 142
+ L++ L N S +V + + FVW LLN SDV+ V +H
Sbjct: 335 EVLKHQAIGGFLTHNGWNSTVESVFEGVPMICMPFVWDQLLNARFVSDVWMVG--LHLEG 392
Query: 141 RGERN 127
R ERN
Sbjct: 393 RIERN 397
>At5g05890.1 68418.m00649 UDP-glucoronosyl/UDP-glucosyl transferase
family protein contains Pfam profile: PF00201
UDP-glucoronosyl and UDP-glucosyl transferase
Length = 455
Score = 30.7 bits (66), Expect = 0.72
Identities = 22/85 (25%), Positives = 35/85 (41%)
Frame = -3
Query: 381 DSLKEVLSALGVLDMLNTDIDALRYNPSANTLVDNHTESMSSNVVHATCLSMVYFVWHTL 202
+ + E L+ G + D L++ L N S +V A + + F W +
Sbjct: 320 EEIMEKLNEKGKIVKWAPQQDVLKHRAIGGFLTHNGWSSTVESVCEAVPMICLPFRWDQM 379
Query: 201 LNCTIASDVYNVSNFVHFHVRGERN 127
LN SDV+ V ++ R ERN
Sbjct: 380 LNARFVSDVWMVG--INLEDRVERN 402
>At1g68130.1 68414.m07782 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 419
Score = 29.5 bits (63), Expect = 1.7
Identities = 25/84 (29%), Positives = 35/84 (41%), Gaps = 4/84 (4%)
Frame = +3
Query: 165 RHCRHQRQWCS--SKGYATQSIPWKDRSRVQRYCSCS--RCDCQQACSRKDYTEAHQYPC 332
+H H++ C SKGYA QS D + C CDC + SR + HQ C
Sbjct: 141 KHSNHKQWICERCSKGYAVQS----DYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDTC 196
Query: 333 *ACQALQVQTRLP*ESQRE*EATE 404
++ RL + Q AT+
Sbjct: 197 TVRRSQPSNHRLHEQQQHTTNATQ 220
>At4g24350.1 68417.m03494 phosphorylase family protein contains Pfam
PF01048: Phosphorylase family
Length = 336
Score = 29.1 bits (62), Expect = 2.2
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -3
Query: 180 DVYNVSNFVHFHVRGERNSSM 118
DV+NV VHF + G N+SM
Sbjct: 114 DVFNVKGIVHFGIAGNMNNSM 134
>At4g02670.1 68417.m00362 zinc finger (C2H2 type) family protein
similar to potato PCP1 zinc finger protein, GenBank
accession number X82328 contains Pfam domain, PF00096:
Zinc finger, C2H2 type
Length = 402
Score = 29.1 bits (62), Expect = 2.2
Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
Frame = +3
Query: 180 QRQW-CS--SKGYATQSIPWKDRSRVQRYCSCS--RCDCQQACSRKDYTEAHQYPC 332
+++W C SK YA QS WK +++ C RCDC SRKD H+ C
Sbjct: 156 EKKWKCEKCSKFYAVQS-DWKAHTKI---CGTRDYRCDCGTLFSRKDTFITHRAFC 207
>At3g45260.1 68416.m04887 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 446
Score = 29.1 bits (62), Expect = 2.2
Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 5/56 (8%)
Frame = +3
Query: 180 QRQW-CS--SKGYATQSIPWKDRSRVQRYCSCS--RCDCQQACSRKDYTEAHQYPC 332
+++W C SK YA S WK S++ C RCDC SRKD H+ C
Sbjct: 142 EKKWKCDKCSKKYAVMS-DWKAHSKI---CGTKEYRCDCGTLFSRKDSFITHRAFC 193
>At5g66730.1 68418.m08412 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 500
Score = 28.7 bits (61), Expect = 2.9
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
Frame = +3
Query: 180 QRQW-CS--SKGYATQSIPWKDRSRVQRYCSCS--RCDCQQACSRKDYTEAHQYPC 332
+++W C SK YA QS WK S++ C +CDC SR+D H+ C
Sbjct: 134 EKKWKCEKCSKKYAVQS-DWKAHSKI---CGTKEYKCDCGTLFSRRDSFITHRAFC 185
>At3g50700.1 68416.m05547 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 452
Score = 28.7 bits (61), Expect = 2.9
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
Frame = +3
Query: 180 QRQW-CS--SKGYATQSIPWKDRSRVQRYCSCS--RCDCQQACSRKDYTEAHQYPC 332
+++W C SK YA QS WK S++ C +CDC SR+D H+ C
Sbjct: 136 EKKWKCDKCSKKYAVQS-DWKAHSKI---CGTKEYKCDCGTLFSRRDSFITHRAFC 187
>At2g02080.1 68415.m00144 zinc finger (C2H2 type) family protein
contains Pfam domain PF00096: Zinc finger, C2H2 type
Length = 516
Score = 28.7 bits (61), Expect = 2.9
Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 5/56 (8%)
Frame = +3
Query: 180 QRQW-CS--SKGYATQSIPWKDRSRVQRYCSCS--RCDCQQACSRKDYTEAHQYPC 332
+++W C SK YA QS WK S+ C RCDC SR+D H+ C
Sbjct: 156 EKKWKCEKCSKRYAVQS-DWKAHSKT---CGTKEYRCDCGTIFSRRDSYITHRAFC 207
>At2g02070.1 68415.m00143 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 602
Score = 28.7 bits (61), Expect = 2.9
Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 5/56 (8%)
Frame = +3
Query: 180 QRQW-CS--SKGYATQSIPWKDRSRVQRYCSCS--RCDCQQACSRKDYTEAHQYPC 332
+++W C SK YA QS WK S+ C RCDC SR+D H+ C
Sbjct: 154 EKKWKCDKCSKRYAVQS-DWKAHSKT---CGTKEYRCDCGTLFSRRDSFITHRAFC 205
>At1g14580.1 68414.m01734 zinc finger (C2H2 type) family protein
similar to zinc finger protein ID1 GB:AAC18941
GI:3170601 from [Zea mays] contains Pfam domain,
PF00096: Zinc finger, C2H2 type
Length = 467
Score = 28.7 bits (61), Expect = 2.9
Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 5/56 (8%)
Frame = +3
Query: 180 QRQW-CS--SKGYATQSIPWKDRSRVQRYCSCS--RCDCQQACSRKDYTEAHQYPC 332
+++W C SK YA QS WK S+ C RCDC SR+D H+ C
Sbjct: 155 EKKWKCDKCSKRYAVQS-DWKAHSKT---CGTKEYRCDCGTIFSRRDSYITHRAFC 206
>At5g18830.2 68418.m02238 squamosa promoter-binding protein-like 7
(SPL7) identical to squamosa promoter binding
protein-like 7 [Arabidopsis thaliana] GI:5931635;
contains Pfam profile PF03110: SBP domain
Length = 775
Score = 28.3 bits (60), Expect = 3.8
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = -3
Query: 312 RYNPSANTLVDNHTESMSSNVVHATCLSMVYFVWHTLLNCTIASDV 175
RYN N L+ N++ S+ NV+H + +L++CT DV
Sbjct: 606 RYNRVLNYLIQNNSASILGNVLHNLETLVKKMEPDSLVHCTCDCDV 651
>At5g18830.1 68418.m02237 squamosa promoter-binding protein-like 7
(SPL7) identical to squamosa promoter binding
protein-like 7 [Arabidopsis thaliana] GI:5931635;
contains Pfam profile PF03110: SBP domain
Length = 801
Score = 28.3 bits (60), Expect = 3.8
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = -3
Query: 312 RYNPSANTLVDNHTESMSSNVVHATCLSMVYFVWHTLLNCTIASDV 175
RYN N L+ N++ S+ NV+H + +L++CT DV
Sbjct: 606 RYNRVLNYLIQNNSASILGNVLHNLETLVKKMEPDSLVHCTCDCDV 651
>At4g26610.1 68417.m03835 protein kinase, putative similar to
protein kinase G11A [Oryza sativa] SWISS-PROT:P47997
Length = 506
Score = 28.3 bits (60), Expect = 3.8
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = -3
Query: 201 LNCTIASDVYNVSNFVHFHVRGERNSSMCAEPASEQVPWC 82
L CT++ V + G++NS CA+PA Q P C
Sbjct: 271 LRCTVSPTVVRSTVLAS---EGQKNSGYCAQPACIQQPSC 307
>At2g43900.1 68415.m05457 endonuclease/exonuclease/phosphatase family
protein belongs to Pfam:PF03372:
Endonuclease/Exonuclease/phosphatase family; contains 3
WD-40 repeats (PF00400);similar to Type II
inositol-1,4,5-trisphosphate 5-phosphatase EC 3.1.3.56
(5PTASE) (INPP5B) (SP:P32019) [Homo sapiens]
Length = 1305
Score = 28.3 bits (60), Expect = 3.8
Identities = 10/28 (35%), Positives = 20/28 (71%)
Frame = +1
Query: 316 RINIRVEHVKHSKCRQDFLKRVKENERL 399
+ ++++EHV S RQ+F + +K NE++
Sbjct: 920 KFHVKIEHVDRSVRRQEFGRIIKTNEKV 947
>At2g43030.1 68415.m05340 ribosomal protein L3 family protein
contains Pfam profile PF00297: ribosomal protein L3
Length = 271
Score = 28.3 bits (60), Expect = 3.8
Identities = 29/104 (27%), Positives = 50/104 (48%), Gaps = 5/104 (4%)
Frame = +1
Query: 148 KVYKVGDIVDIRGNGAVQKGMPH--KVYHGKTGRV-YNVTAH-ALGVIVNKRVRGRIIP- 312
+++K GD+VD+ G + KG K +H K G++ + +H ALG I GR+
Sbjct: 155 EIFKEGDLVDVAGT-TIGKGFQGGIKRHHFKRGQMTHGSKSHRALGSIGAGTTPGRVYKG 213
Query: 313 KRINIRVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKR 444
K++ R+ + + +K KE ++ + GK NL R
Sbjct: 214 KKMPGRMGGTRTKIRKLKIVKVDKELNVVMIKGALPGKPGNLLR 257
>At2g13150.1 68415.m01450 expressed protein contains a bZIP
transcription factor basic domain signature (PDOC00036)
Length = 262
Score = 28.3 bits (60), Expect = 3.8
Identities = 19/55 (34%), Positives = 29/55 (52%)
Frame = +2
Query: 335 SMSSTPSADKTSLRESKRMRGY*RKPRLPARPST*RDSQLPLKLPTSSVELRNPS 499
S +STPS ++ + S P L PS+ R + +PL P++SVE R+ S
Sbjct: 4 SDNSTPSRPRSITQPSLAFSSL---PPLSPSPSSSRRNSIPLMNPSASVESRDSS 55
>At5g05880.1 68418.m00647 UDP-glucoronosyl/UDP-glucosyl transferase
family protein contains Pfam profile: PF00201
UDP-glucoronosyl and UDP-glucosyl transferase
Length = 451
Score = 27.9 bits (59), Expect = 5.1
Identities = 18/65 (27%), Positives = 27/65 (41%)
Frame = -3
Query: 321 DALRYNPSANTLVDNHTESMSSNVVHATCLSMVYFVWHTLLNCTIASDVYNVSNFVHFHV 142
+ L++ L N S +V + + F W LLN SDV+ V +H
Sbjct: 336 EVLKHRAIGGFLTHNGWNSTVESVCEGVPMICLPFRWDQLLNARFVSDVWMVG--IHLEG 393
Query: 141 RGERN 127
R ER+
Sbjct: 394 RIERD 398
>At1g20020.1 68414.m02507 ferredoxin--NADP(+) reductase, putative /
adrenodoxin reductase, putative strong similarity to
Ferredoxin--NADP reductase, chloroplast precursor (EC
1.18.1.2) (FNR) from {Pisum sativum} SP|P10933,
{Mesembryanthemum crystallinum} SP|P41343, {Spinacia
oleracea} SP|P00455, [Capsicum annuum] GI:6899972
Length = 369
Score = 27.9 bits (59), Expect = 5.1
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = +1
Query: 154 YKVGDIVDIRGNGAVQKGMPHKVYHGKTGRVYNVTAHALGVIVN 285
Y+ G V + +G + G PHKV R+Y++ + ALG + N
Sbjct: 125 YREGQSVGVIADGIDKNGKPHKV------RLYSIASSALGDLGN 162
>At5g41220.1 68418.m05009 glutathione S-transferase, putative
similar to emb|CAA10662
Length = 590
Score = 27.5 bits (58), Expect = 6.7
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +3
Query: 114 HTWNYSALHVHESVQSWRHCRHQRQWCS 197
+T NY + E +WR RH ++WCS
Sbjct: 370 YTNNYKSNFTLE--HAWRELRHSKKWCS 395
>At4g31490.1 68417.m04473 coatomer beta subunit, putative /
beta-coat protein, putative / beta-COP, putative similar
to Coatomer beta subunit (Beta-coat protein) (Beta-COP)
from {Rattus norvegicus} SP|P23514, {Mus musculus}
SP|Q9JIF7, {Homo sapiens} SP|P53618; contains Pfam
profile: PF01602 Adaptin N terminal region
Length = 948
Score = 27.5 bits (58), Expect = 6.7
Identities = 12/39 (30%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +1
Query: 322 NIRVEHVKHSKCRQDFLKRVKENE-RLLKEAKAAGKTVN 435
N+ ++ + CRQ F+K + E + R ++E KA +T +
Sbjct: 628 NVEMKKIWLESCRQSFVKMISEKQLREMEELKAKTQTTH 666
>At3g45880.1 68416.m04965 hypothetical protein
Length = 431
Score = 27.5 bits (58), Expect = 6.7
Identities = 18/55 (32%), Positives = 24/55 (43%)
Frame = -3
Query: 450 WLSLQVDGLAGSLGFLQ*PLILFDSLKEVLSALGVLDMLNTDIDALRYNPSANTL 286
W +Q D FLQ L SL VLS D ++D + ++ PSA L
Sbjct: 299 WYDMQFDIKYAYFNFLQSLLYKSSSLNPVLSWREDEDSESSDAEGSKFTPSATNL 353
>At3g02280.1 68416.m00209 flavodoxin family protein low similarity
to SP|Q05001 NADPH-cytochrome P450 reductase (EC
1.6.2.4) {Catharanthus roseus}, similar to
NADPH-dependent FMN and FAD containing oxidoreductase
[Homo sapiens] GI:6694369; contains Pfam profiles
PF00258: flavodoxin, PF00667: FAD binding domain,
PF00175: Oxidoreductase NAD-binding domain
Length = 623
Score = 27.5 bits (58), Expect = 6.7
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +3
Query: 9 RCFLDPSSFVTQGSKMTNSKGY 74
RC LDP SF+T G + T + +
Sbjct: 280 RCGLDPESFITVGPRETENSSF 301
>At1g62330.1 68414.m07033 expressed protein contains Pfam PF03138:
Plant protein family. The function of this family of
plant proteins is unknown;
Length = 672
Score = 27.5 bits (58), Expect = 6.7
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = +1
Query: 205 GMPHKVYHGKTGRVYNVTAHALGVIVNK 288
G P K Y+G GR+ AHAL NK
Sbjct: 182 GKPKKTYNGTYGRLLAYAAHALAEGQNK 209
>At5g44160.1 68418.m05404 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 466
Score = 27.1 bits (57), Expect = 8.9
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 5/56 (8%)
Frame = +3
Query: 180 QRQW-CS--SKGYATQSIPWKDRSRVQRYCSCS--RCDCQQACSRKDYTEAHQYPC 332
+++W C +K YA QS WK S+ C RCDC SR+D H+ C
Sbjct: 139 EKKWTCEKCAKRYAVQS-DWKAHSKT---CGTREYRCDCGTIFSRRDSFITHRAFC 190
>At5g41240.1 68418.m05011 glutathione S-transferase, putative
similar to glutathione S-transferase, GST 10b
GB:CAA10662 [Arabidopsis thaliana] 37349.
Length = 591
Score = 27.1 bits (57), Expect = 8.9
Identities = 7/14 (50%), Positives = 11/14 (78%)
Frame = +3
Query: 159 SWRHCRHQRQWCSS 200
+WR RH ++WCS+
Sbjct: 385 AWRELRHNKKWCST 398
>At5g03150.1 68418.m00263 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 503
Score = 27.1 bits (57), Expect = 8.9
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 5/56 (8%)
Frame = +3
Query: 180 QRQW-CS--SKGYATQSIPWKDRSRVQRYCSCS--RCDCQQACSRKDYTEAHQYPC 332
+++W C SK YA QS WK ++ C +CDC SRKD H+ C
Sbjct: 156 EKKWKCEKCSKKYAVQS-DWKAHAKT---CGTREYKCDCGTLFSRKDSFITHRAFC 207
>At4g31670.1 68417.m04497 ubiquitin carboxyl-terminal hydrolase
family protein / zinc finger (MYND type) family protein
similar to ubiquitin-specific protease 15 (UBP15)
[Arabidopsis thaliana] GI:11993475; contains Pfam
profiles PF00443: Ubiquitin carboxyl-terminal hydrolase,
PF01753: MYND finger
Length = 631
Score = 27.1 bits (57), Expect = 8.9
Identities = 11/27 (40%), Positives = 13/27 (48%), Gaps = 4/27 (14%)
Frame = +3
Query: 264 CSRCD----CQQACSRKDYTEAHQYPC 332
CSRC C C R D++ HQ C
Sbjct: 72 CSRCKSVRYCSAECQRSDWSSGHQRNC 98
>At3g63530.1 68416.m07156 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 248
Score = 27.1 bits (57), Expect = 8.9
Identities = 19/81 (23%), Positives = 42/81 (51%), Gaps = 3/81 (3%)
Frame = +1
Query: 139 TYMKVYKVGDIVDIRGNGAVQK---GMPHKVYHGKTGRVYNVTAHALGVIVNKRVRGRII 309
TY ++ ++G+ V G Q+ +P K Y K G +++ ++ + ++ +I
Sbjct: 151 TYEELVELGEAVGTESRGLSQELIETLPTKKY--KFGSIFSRKRAGERCVICQ-LKYKIG 207
Query: 310 PKRINIRVEHVKHSKCRQDFL 372
+++N+ +HV HS+C +L
Sbjct: 208 ERQMNLPCKHVYHSECISKWL 228
>At1g03840.1 68414.m00365 zinc finger (C2H2 type) family protein
contains Zinc finger,C2H2 type,domain contains Pfam
domain, PF00096: Zinc finger, C2H2 type
Length = 506
Score = 27.1 bits (57), Expect = 8.9
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 5/56 (8%)
Frame = +3
Query: 180 QRQW-CS--SKGYATQSIPWKDRSRVQRYCSCS--RCDCQQACSRKDYTEAHQYPC 332
+++W C +K YA QS WK S+ C RCDC SR+D H+ C
Sbjct: 143 EKKWKCEKCAKRYAVQS-DWKAHSKT---CGTREYRCDCGTIFSRRDSFITHRAFC 194
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,245,666
Number of Sequences: 28952
Number of extensions: 249213
Number of successful extensions: 820
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 801
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 820
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1112061928
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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