Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_O05
         (472 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC28F2.07 |sfr1|dds20, mug13|Swi five-dependent recombination ...    30   0.15 
SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|c...    27   1.1  
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc...    26   2.5  
SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4 |S...    25   4.4  
SPBC1604.17c |||conserved fungal protein|Schizosaccharomyces pom...    25   5.8  
SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces p...    25   7.7  

>SPBC28F2.07 |sfr1|dds20, mug13|Swi five-dependent recombination
           repair protein Sfr1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 299

 Score = 30.3 bits (65), Expect = 0.15
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = -3

Query: 128 QNSRG*KTIENPQ*TN*ASNHADHFQF*KNS*IIHLKNSSA 6
           ++S+G   IENP   N + NH+D+  F + S  +H +N  A
Sbjct: 31  RDSQGQLGIENPPKCNNSGNHSDNLGFIEQSETVHPENEKA 71


>SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 708

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
 Frame = -1

Query: 340 PYSLFYYKTVASRYPPAQSSASSNKKLAFFSI-ISSLHFLHAATLLQPLVEYSASQELHW 164
           P SLF      +  P ++SS+  +KK +  S  + S   L   T   PL+   + +  HW
Sbjct: 42  PVSLFCSSPYPNLPPHSRSSSLESKKPSVASQDVKSDGTLPIGTNNNPLIPSHSQESSHW 101

Query: 163 SMKFTKVTSA 134
           +++   + SA
Sbjct: 102 TIRHESMPSA 111


>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1428

 Score = 26.2 bits (55), Expect = 2.5
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -2

Query: 60   SLSILKEFIDYTLEEFIGRP 1
            SLSIL+ FI+ +L EF   P
Sbjct: 1378 SLSILRRFIETSLNEFFAEP 1397


>SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 690

 Score = 25.4 bits (53), Expect = 4.4
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -2

Query: 309 HHGILQPSHQHHQTKNLHSSP 247
           H G+L P HQH    ++ +SP
Sbjct: 16  HPGLLTPDHQHAAILSVQNSP 36


>SPBC1604.17c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 459

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +3

Query: 90  LWIFYSFLPP*ILRIAEVTLVN 155
           L +FY+F+PP       VTL+N
Sbjct: 277 LLVFYTFIPPRFTIQTSVTLIN 298


>SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 595

 Score = 24.6 bits (51), Expect = 7.7
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = -1

Query: 295 PAQSSASSNKKLAFFSIISSLHFLHAATLLQPLVEYSASQELHW 164
           P + S+++  K++  SI    H LHA TL    VEY+  + L W
Sbjct: 224 PFKYSSTTRHKVSTESIF---HVLHAFTLFDTTVEYNI-EPLLW 263


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,435,544
Number of Sequences: 5004
Number of extensions: 26560
Number of successful extensions: 62
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 180421690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)