Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_O05
         (472 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42306| Best HMM Match : THF_DHG_CYH_C (HMM E-Value=1.4)             28   3.4  
SB_52387| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.5  

>SB_42306| Best HMM Match : THF_DHG_CYH_C (HMM E-Value=1.4)
          Length = 444

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 9/16 (56%), Positives = 14/16 (87%)
 Frame = -1

Query: 73  RTMPITFNFKRIHRLY 26
           +T+P  FNF+++HRLY
Sbjct: 399 KTVPFDFNFEKMHRLY 414


>SB_52387| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1088

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 16/39 (41%), Positives = 19/39 (48%)
 Frame = -1

Query: 334 SLFYYKTVASRYPPAQSSASSNKKLAFFSIISSLHFLHA 218
           SL Y   VA  + P     +S  KL FFS IS  H L +
Sbjct: 709 SLSYTTRVAVCFSPGIKKQASLAKLCFFSNISDQHLLRS 747


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,258,277
Number of Sequences: 59808
Number of extensions: 183403
Number of successful extensions: 411
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 339
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 410
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 982083920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)