Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_O05
         (472 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58728-4|AAX55696.1|  158|Caenorhabditis elegans Synthetic letha...    27   6.8  
U58728-3|AAX55695.1|  305|Caenorhabditis elegans Synthetic letha...    27   6.8  
AY223545-1|AAO73070.1|  158|Caenorhabditis elegans SYM-3B protein.     27   6.8  
AY221634-1|AAO66457.1|  305|Caenorhabditis elegans SYM-3A protein.     27   6.8  
Z93381-3|CAB07606.1|  362|Caenorhabditis elegans Hypothetical pr...    27   9.0  

>U58728-4|AAX55696.1|  158|Caenorhabditis elegans Synthetic lethal
           with mec protein3, isoform b protein.
          Length = 158

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = -2

Query: 303 GILQPSHQHHQTKNLHSSPLSAVFIFCMQLPC 208
           G  + + +  + KN HS+  +  F+FC ++PC
Sbjct: 40  GSFEEATERVEVKN-HSASFNTRFVFCCRIPC 70


>U58728-3|AAX55695.1|  305|Caenorhabditis elegans Synthetic lethal
           with mec protein3, isoform a protein.
          Length = 305

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = -2

Query: 303 GILQPSHQHHQTKNLHSSPLSAVFIFCMQLPC 208
           G  + + +  + KN HS+  +  F+FC ++PC
Sbjct: 40  GSFEEATERVEVKN-HSASFNTRFVFCCRIPC 70


>AY223545-1|AAO73070.1|  158|Caenorhabditis elegans SYM-3B protein.
          Length = 158

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = -2

Query: 303 GILQPSHQHHQTKNLHSSPLSAVFIFCMQLPC 208
           G  + + +  + KN HS+  +  F+FC ++PC
Sbjct: 40  GSFEEATERVEVKN-HSASFNTRFVFCCRIPC 70


>AY221634-1|AAO66457.1|  305|Caenorhabditis elegans SYM-3A protein.
          Length = 305

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = -2

Query: 303 GILQPSHQHHQTKNLHSSPLSAVFIFCMQLPC 208
           G  + + +  + KN HS+  +  F+FC ++PC
Sbjct: 40  GSFEEATERVEVKN-HSASFNTRFVFCCRIPC 70


>Z93381-3|CAB07606.1|  362|Caenorhabditis elegans Hypothetical
           protein F28G4.3 protein.
          Length = 362

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -2

Query: 132 FSKFTGVKNYRKSTINQLSFEPCRSLSILK 43
           F  FTG  NY    ++ L++ P  SL++LK
Sbjct: 240 FFDFTGHSNYATLFLDVLTYFPTNSLTLLK 269


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,901,629
Number of Sequences: 27780
Number of extensions: 150783
Number of successful extensions: 356
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 354
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 356
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 850313440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)