Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_O05
         (472 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g20320.1 68415.m02373 DENN (AEX-3) domain-containing protein ...    27   4.8  
At2g06500.1 68415.m00720 hAT dimerisation domain-containing prot...    27   4.8  

>At2g20320.1 68415.m02373 DENN (AEX-3) domain-containing protein
           contains Pfam domain PF02141: DENN (AEX-3) domain
          Length = 976

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -1

Query: 337 YSLFYYKTVASRYPPAQSSASSNKKLAFF 251
           Y LF++  +  +YPP +  A   K LA F
Sbjct: 379 YQLFFHAQILFKYPPGKKVAMRPKDLATF 407


>At2g06500.1 68415.m00720 hAT dimerisation domain-containing protein
           / transposase-related low similarity to transposase
           [Ipomoea purpurea] AB004906 GI:4063770
          Length = 582

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 5/48 (10%)
 Frame = -2

Query: 132 FSKFTGVKNYRKSTINQLSFEPCRSLSI---LKEFIDY--TLEEFIGR 4
           FSK   +KNY +ST++Q        LSI   + E IDY   +++F G+
Sbjct: 526 FSKLKLIKNYLRSTMSQDRLNGLAILSIERAMLEKIDYATVMDDFAGK 573


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,286,424
Number of Sequences: 28952
Number of extensions: 133576
Number of successful extensions: 292
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 280
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 292
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 801831960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)