Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_F_O03
(688 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC330.10 |pcm1||mRNA capping methyltransferase|Schizosaccharom... 141 7e-35
SPAC29B12.05c |||mitochondrial S-adenosylmethionine-dependent me... 31 0.21
SPAC17G6.13 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 29 0.83
SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family |Schizosa... 28 1.5
SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter Trk2|Sch... 27 1.9
SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|c... 27 2.5
SPCC320.10 |srp72||signal recognition particle subunit Srp72|Sch... 27 3.4
SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces pom... 27 3.4
SPCC162.05 |coq3||hexaprenyldihydroxybenzoate methyltransferase|... 26 4.4
SPAC1B3.06c |||UbiE family methyltransferase |Schizosaccharomyce... 26 5.9
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce... 26 5.9
SPCC757.02c |||epimarase |Schizosaccharomyces pombe|chr 3|||Manual 26 5.9
SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po... 26 5.9
SPBC29A10.09c |||CAF1 family ribonuclease|Schizosaccharomyces po... 26 5.9
>SPCC330.10 |pcm1||mRNA capping
methyltransferase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 389
Score = 141 bits (342), Expect = 7e-35
Identities = 77/173 (44%), Positives = 98/173 (56%)
Frame = +2
Query: 170 VVAAHYNHLEEKGLKERYNSPIFHLRNFNNWVKSVLIQEFTDKIREKDYGRPLRILDICC 349
VV +HYN + G K+R SPI L+ FNNW+KSVLIQ+F DY P+ +LD+ C
Sbjct: 93 VVRSHYNARPDLGYKKRQFSPIIQLKRFNNWIKSVLIQKFAP--HASDY--PILVLDMGC 148
Query: 350 GKGGDLSKWQKVRPEHAIFADIAEVSVQQCETRYEELRRRCGRLFSAEFIATDCTKDXLR 529
GKGGDL KW K + I DIAEVSV Q + RY E+ F A F A DC +
Sbjct: 149 GKGGDLIKWDKAGIDGYIGIDIAEVSVNQAKKRYREMHAS----FDALFYAGDCFSSSIN 204
Query: 530 DKYKDPSXSFDIVSCQFGLXXSFEXLLXXRXMLTNISECLKPGGYXFGTIPNA 688
+ FD+VS QF + +FE R +L N+S+CL GG GTIPN+
Sbjct: 205 ELLPPDQRKFDVVSLQFCMHYAFESEEKVRVLLGNVSKCLPRGGVMIGTIPNS 257
>SPAC29B12.05c |||mitochondrial S-adenosylmethionine-dependent
methyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 309
Score = 30.7 bits (66), Expect = 0.21
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +2
Query: 260 WVKSVLIQEFTDKIREKDYGRPLRILDICCGKG 358
W ++ DK+ + +PL+ILD+C G G
Sbjct: 96 WETEEWVERVVDKLNRLERLKPLKILDLCTGSG 128
>SPAC17G6.13 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 433
Score = 28.7 bits (61), Expect = 0.83
Identities = 19/81 (23%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Frame = +2
Query: 83 LQKQTENVDENKTNANNSNHEPPPK-KHSSVVAAHYNHLEEKGLKERYNSPIFHLRNFNN 259
+Q+Q E + K ++ E + +H + +E L+E Y + R F N
Sbjct: 37 IQRQEEQLALRKKAIEDARQEVLQQIQHRKFRQYLHEREQEARLQEYYLEQLQERRAFEN 96
Query: 260 WVKSVLIQEFTDKIREKDYGR 322
V++++ + F D+ RE+ + R
Sbjct: 97 VVRTIIRKRFEDEERERAHRR 117
>SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 528
Score = 27.9 bits (59), Expect = 1.5
Identities = 15/41 (36%), Positives = 24/41 (58%)
Frame = +2
Query: 95 TENVDENKTNANNSNHEPPPKKHSSVVAAHYNHLEEKGLKE 217
T+N E+ TN NN N E K +S V ++ +H E+ G ++
Sbjct: 42 TKNKLESGTNDNNKNKEDLSKLYSDVTTSNTSH-EKDGSED 81
>SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter
Trk2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 880
Score = 27.5 bits (58), Expect = 1.9
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +2
Query: 95 TENVDENKTNANNSNHEPPPKKH 163
TEN D+N N NN+++ P +K+
Sbjct: 725 TENDDDNNINNNNNDNNTPKRKN 747
>SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1274
Score = 27.1 bits (57), Expect = 2.5
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = +1
Query: 229 PNISLKEFQQLGEKCSN 279
P IS KE +LGEKC+N
Sbjct: 1048 PKISTKEDTKLGEKCAN 1064
>SPCC320.10 |srp72||signal recognition particle subunit
Srp72|Schizosaccharomyces pombe|chr 3|||Manual
Length = 561
Score = 26.6 bits (56), Expect = 3.4
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = +2
Query: 302 REKDYGRPLRILDICCGKGGDLSKWQKVRPEHAIF 406
++K + R L +LD+ GK + K +K PE +I+
Sbjct: 259 QKKQFIRNLALLDMAVGKQRSVRKEKKRNPEESIY 293
>SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 992
Score = 26.6 bits (56), Expect = 3.4
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = +1
Query: 178 STLQPSGRKRSKRTIQFPNISLKEFQQ 258
S L + R SKR + PN LKEF Q
Sbjct: 265 SALSETFRPFSKRELNLPNTFLKEFDQ 291
>SPCC162.05 |coq3||hexaprenyldihydroxybenzoate
methyltransferase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 271
Score = 26.2 bits (55), Expect = 4.4
Identities = 21/64 (32%), Positives = 30/64 (46%)
Frame = +2
Query: 182 HYNHLEEKGLKERYNSPIFHLRNFNNWVKSVLIQEFTDKIREKDYGRPLRILDICCGKGG 361
H+N L + S + HL N S + T+ RE++ +ILDI CG GG
Sbjct: 37 HFNELAKTWWDWDGGSRLLHLMN------STRLDFMTEVFRERNCFSGKKILDIGCG-GG 89
Query: 362 DLSK 373
LS+
Sbjct: 90 ILSE 93
>SPAC1B3.06c |||UbiE family methyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 278
Score = 25.8 bits (54), Expect = 5.9
Identities = 31/112 (27%), Positives = 41/112 (36%)
Frame = +2
Query: 329 RILDICCGKGGDLSKWQKVRPEHAIFADIAEVSVQQCETRYEELRRRCGRLFSAEFIATD 508
RILD+ CG G + K PE + E S + + E LR+ E I
Sbjct: 43 RILDVGCGPGTITVGFPKYVPEGEVIG--VEPSQELLDKAEEALRKE--ETLKKEKINNC 98
Query: 509 CTKDXLRDKYKDPSXSFDIVSCQFGLXXSFEXLLXXRXMLTNISECLKPGGY 664
+ K P +FDIV+ L L L + KPGGY
Sbjct: 99 SFRLGSIYKLPFPDNTFDIVNTHQVLV----HLQDPVAALVELKRVTKPGGY 146
>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1131
Score = 25.8 bits (54), Expect = 5.9
Identities = 14/46 (30%), Positives = 21/46 (45%)
Frame = +2
Query: 80 SLQKQTENVDENKTNANNSNHEPPPKKHSSVVAAHYNHLEEKGLKE 217
+ QK+ NVD N NN + +K S++ H L L+E
Sbjct: 318 TFQKENANVDANHATENNLEGQ-ATQKSVSILKGHNKALSNVSLQE 362
>SPCC757.02c |||epimarase |Schizosaccharomyces pombe|chr 3|||Manual
Length = 405
Score = 25.8 bits (54), Expect = 5.9
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +2
Query: 197 EEKGLKERYNSPIFHLRNFNNWVKSVLIQEFTDKIREKD 313
+E G+K NS I + + WVK +Q+ I E++
Sbjct: 304 KELGIKHTPNSKIINQISLQQWVKQKKVQDAWRTIAERE 342
>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 658
Score = 25.8 bits (54), Expect = 5.9
Identities = 18/68 (26%), Positives = 28/68 (41%)
Frame = +2
Query: 56 SEFGDSELSLQKQTENVDENKTNANNSNHEPPPKKHSSVVAAHYNHLEEKGLKERYNSPI 235
S G S + N + + N+N SN+E K SS+ + L G N+
Sbjct: 511 SFMGSSSNNSNSSNNNSNTSNNNSNTSNNESMVSKLSSLSGMASSFLGSSGNNNNNNNS- 569
Query: 236 FHLRNFNN 259
+ N+NN
Sbjct: 570 -NSGNYNN 576
>SPBC29A10.09c |||CAF1 family ribonuclease|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 427
Score = 25.8 bits (54), Expect = 5.9
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = +2
Query: 353 KGGDLSKWQKVRPEHAIFADI 415
K D+ +WQ V P H F D+
Sbjct: 402 KHSDIQRWQNVLPIHGSFLDL 422
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,586,993
Number of Sequences: 5004
Number of extensions: 52446
Number of successful extensions: 207
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 205
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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