Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_F_O03
(688 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0538 - 4670159-4670251,4670332-4670393,4670476-4670599,467... 130 1e-30
09_04_0543 - 18442571-18443111,18443232-18443426,18443507-184440... 32 0.37
11_01_0404 + 3071412-3071464,3073572-3074970 30 2.0
06_01_1173 + 10014391-10014678,10015478-10017245,10017333-100174... 30 2.0
01_06_0521 + 30001662-30001752,30001883-30001999,30002099-300022... 29 2.6
02_05_0828 + 32057670-32057851,32060054-32060132,32060808-320608... 28 8.0
02_04_0490 - 23411742-23412944,23413071-23413595,23413666-234137... 28 8.0
01_06_0292 + 28243408-28243543,28243631-28243760,28243860-28244550 28 8.0
>08_01_0538 -
4670159-4670251,4670332-4670393,4670476-4670599,
4670797-4670859,4671483-4671533,4671627-4671691,
4671797-4671935,4672332-4672388,4672729-4672827,
4673266-4673337,4673426-4673494,4673617-4673762,
4673881-4674157
Length = 438
Score = 130 bits (314), Expect = 1e-30
Identities = 74/175 (42%), Positives = 97/175 (55%), Gaps = 3/175 (1%)
Frame = +2
Query: 173 VAAHYNHLEEKGLKERYNSPIFHLRNFNNWVKSVLIQEFTDKIREKDYGRPLRILDICCG 352
VA HY+ + L+ER NSPI HL+ NNW+KSVLIQ + D +LD+ CG
Sbjct: 112 VADHYSARSNQTLEERENSPIIHLKKLNNWIKSVLIQLYA---HPGDC-----VLDLACG 163
Query: 353 KGGDLSKWQKVRPEHAIFADIAEVSVQQCETRYE---ELRRRCGRLFSAEFIATDCTKDX 523
KGGDL KW K + + + DIAE S++ C TRY + +RR F A I DC +
Sbjct: 164 KGGDLIKWDKAKVGYYVGVDIAEGSIKDCMTRYNGDTDQQRRKKFSFPARLICADCYEAR 223
Query: 524 LRDKYKDPSXSFDIVSCQFGLXXSFEXLLXXRXMLTNISECLKPGGYXFGTIPNA 688
L D++ FDI SCQF L S+ R L N+S L+PGG GT+P+A
Sbjct: 224 L-DEHLYEDAPFDICSCQFALHYSWSTEARARQALANVSALLRPGGVFIGTMPDA 277
>09_04_0543 -
18442571-18443111,18443232-18443426,18443507-18444045,
18444205-18444375,18444794-18445219
Length = 623
Score = 32.3 bits (70), Expect = 0.37
Identities = 23/84 (27%), Positives = 37/84 (44%)
Frame = +2
Query: 56 SEFGDSELSLQKQTENVDENKTNANNSNHEPPPKKHSSVVAAHYNHLEEKGLKERYNSPI 235
S FGD+ S ++ E TN N N PPP S V +H N E L+ R +
Sbjct: 243 SMFGDNHSSDEQDDE------TNQNGENSMPPPNHRSGVPLSHTNDPEVNVLENRGSQTC 296
Query: 236 FHLRNFNNWVKSVLIQEFTDKIRE 307
+ + + K+ +Q+ ++ E
Sbjct: 297 HNSASLWDNAKNDCLQDVQSEVIE 320
>11_01_0404 + 3071412-3071464,3073572-3074970
Length = 483
Score = 29.9 bits (64), Expect = 2.0
Identities = 28/119 (23%), Positives = 51/119 (42%), Gaps = 1/119 (0%)
Frame = +2
Query: 128 NNSNHEPPPKKHSSVVAAHYNHLEEKGLKERYNSPIFHLRNFNNWVKSVLIQ-EFTDKIR 304
++ +H K H S H + + K++ SP ++ ++ VK ++ +T +
Sbjct: 123 HHHHHRHHSKNHGSDEEEHDMNEDAADGKDKKGSPWHRMKWTDSMVKLLITAVSYTGEDP 182
Query: 305 EKDYGRPLRILDICCGKGGDLSKWQKVRPEHAIFADIAEVSVQQCETRYEELRRRCGRL 481
D G R + KG KW+ + + VS QQCE ++ +L +R RL
Sbjct: 183 GADLGGGRRNYSMMQKKG----KWKAI--SKVMGERGCHVSPQQCEDKFNDLNKRYKRL 235
>06_01_1173 +
10014391-10014678,10015478-10017245,10017333-10017436,
10017632-10017706,10017887-10017918,10019396-10019482,
10020848-10021294,10021477-10021630,10022203-10022329,
10022547-10022632,10022719-10022790,10023083-10023286,
10023732-10024049
Length = 1253
Score = 29.9 bits (64), Expect = 2.0
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +2
Query: 125 ANNSNHEPPPKKHSSVVAAHYNHLEE 202
ANN +H PPP S + HY L++
Sbjct: 913 ANNGSHSPPPVSVSGIPKYHYKDLQK 938
>01_06_0521 +
30001662-30001752,30001883-30001999,30002099-30002229,
30002320-30002370,30002639-30002689,30002864-30003007,
30003082-30003224,30003376-30003448,30003540-30003635,
30003737-30003835,30003905-30003958,30004032-30004155,
30004420-30004544,30004720-30004842,30004948-30005028
Length = 500
Score = 29.5 bits (63), Expect = 2.6
Identities = 19/47 (40%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
Frame = +2
Query: 446 RYEELRRRCGRLFSAEFIATDCTKDXL--RDKYKDPSXSFDIVSCQF 580
R LRRR G S+ D KD L + DP DIVSC F
Sbjct: 55 RVGRLRRRAGAASSSVASVEDAKKDVLVALSQIIDPDFGTDIVSCGF 101
>02_05_0828 +
32057670-32057851,32060054-32060132,32060808-32060869,
32060993-32061092,32061169-32061210,32062057-32062098,
32062189-32062343,32063609-32063636
Length = 229
Score = 27.9 bits (59), Expect = 8.0
Identities = 17/68 (25%), Positives = 31/68 (45%)
Frame = +2
Query: 2 VVCDVYQAXVSRQEFEEMSEFGDSELSLQKQTENVDENKTNANNSNHEPPPKKHSSVVAA 181
V+CD A + ++S F S ++ E +D+ T++NN P ++ +
Sbjct: 37 VLCDADVALIVFSSTGKLSHFASSSMN-----EIIDKYNTHSNNLGKAEQPSLDLNLEHS 91
Query: 182 HYNHLEEK 205
Y HL E+
Sbjct: 92 KYAHLNEQ 99
>02_04_0490 -
23411742-23412944,23413071-23413595,23413666-23413747,
23413841-23414050,23414371-23414523,23415335-23415447,
23415476-23415622
Length = 810
Score = 27.9 bits (59), Expect = 8.0
Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Frame = +2
Query: 371 KWQKVRPEHAIFADIAEVSVQQCETRY--EELRRRCGRLFSAEFIATDCTKDXL 526
KW+KV E + F D ++ + E Y + RR R+ + + DC D +
Sbjct: 581 KWEKVLDEVSDFCDKYDIVKLEMEDTYIDPKKRRHKSRITNKHYYQVDCFNDVI 634
>01_06_0292 + 28243408-28243543,28243631-28243760,28243860-28244550
Length = 318
Score = 27.9 bits (59), Expect = 8.0
Identities = 15/77 (19%), Positives = 32/77 (41%)
Frame = +2
Query: 2 VVCDVYQAXVSRQEFEEMSEFGDSELSLQKQTENVDENKTNANNSNHEPPPKKHSSVVAA 181
++C +Y + SR G ++ ++ + K A + +H+PPP +
Sbjct: 78 IICSLYNSIGSRWSIIASKLPGRTDNDVKNYWNTKLKKKAMAMHHHHQPPPPQQQHYHHH 137
Query: 182 HYNHLEEKGLKERYNSP 232
H++ + G + SP
Sbjct: 138 HHHRVAGGGARVTLVSP 154
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,212,074
Number of Sequences: 37544
Number of extensions: 314578
Number of successful extensions: 1021
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 988
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1018
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -