Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_F_O02
(782 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC83.17 |||transcriptional coactivator, multiprotein bridging ... 128 9e-31
SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease XPF... 33 0.046
SPCC338.07c |||NatA N-acetyltransferase complex subunit |Schizos... 29 0.57
SPCC1450.07c |||D-amino acid oxidase |Schizosaccharomyces pombe|... 27 3.0
SPAPB18E9.01 |trm5||tRNA |Schizosaccharomyces pombe|chr 1|||Manual 27 3.0
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 27 4.0
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||... 26 5.3
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 26 5.3
SPCC417.08 |tef3||translation elongation factor eEF3|Schizosacch... 26 7.0
>SPBC83.17 |||transcriptional coactivator, multiprotein bridging
factor Mbf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 148
Score = 128 bits (309), Expect = 9e-31
Identities = 66/136 (48%), Positives = 87/136 (63%), Gaps = 3/136 (2%)
Frame = +2
Query: 92 MSDWDTVTIL--RKKP-PKASALKTEQAVNAARRQGIPVDTQQKYGAGTNKQHVTTKNTA 262
MSDWDTVT + R P + KT+ +N+ARR G V T++KY G Q ++
Sbjct: 1 MSDWDTVTKIGSRAGPGARTHVAKTQSQINSARRAGAIVGTEKKYATGNKSQDPAGQHLT 60
Query: 263 KLDRETEELRHEKIPLDLGKLIMQGRQAKGMSQKDLATKICEKPQIVNDYEAGRGIPNNI 442
K+DRE E + + I +GRQAKG +QKDL+ +I EKPQ+VNDYE+GR IPN
Sbjct: 61 KIDRENEVKPPSTTGRSVAQAIQKGRQAKGWAQKDLSQRINEKPQVVNDYESGRAIPNQQ 120
Query: 443 VLGKIERAIGIKLRGK 490
VL K+ERA+GIKLRG+
Sbjct: 121 VLSKMERALGIKLRGQ 136
>SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease
XPF|Schizosaccharomyces pombe|chr 3|||Manual
Length = 892
Score = 33.1 bits (72), Expect = 0.046
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Frame = +2
Query: 119 LRKKPPKASALKTEQAVNAARRQGIPVDTQQKYGAGTN-KQHVTTKNTAKLDRETEELRH 295
+ K K K +A N R+G+P +++ G N T+ NT D + +LR
Sbjct: 439 MSKSIKKPEPSKEREASNTTSRKGVPPSKRRRVRGGNNATSRTTSDNTDANDSFSRDLRL 498
Query: 296 EKIPL 310
EKI L
Sbjct: 499 EKILL 503
>SPCC338.07c |||NatA N-acetyltransferase complex subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 729
Score = 29.5 bits (63), Expect = 0.57
Identities = 22/74 (29%), Positives = 32/74 (43%), Gaps = 1/74 (1%)
Frame = +2
Query: 95 SDWDTVTILR-KKPPKASALKTEQAVNAARRQGIPVDTQQKYGAGTNKQHVTTKNTAKLD 271
++W + + + + ASA K A + QG+PVDTQ++ A V K D
Sbjct: 147 ANWSALAVAQFLRGEYASAYKIVDAFESTINQGVPVDTQEESEAMLFMNLVILKKDGVED 206
Query: 272 RETEELRHEKIPLD 313
L EK LD
Sbjct: 207 AYKHLLSIEKKVLD 220
>SPCC1450.07c |||D-amino acid oxidase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 348
Score = 27.1 bits (57), Expect = 3.0
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +3
Query: 498 ANHCSLLADRNNGIPWEAKTLLRFIY 575
AN CS+ A +N + W+ T RF Y
Sbjct: 57 ANFCSISATDDNALRWDKITYHRFAY 82
>SPAPB18E9.01 |trm5||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
Length = 435
Score = 27.1 bits (57), Expect = 3.0
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = -2
Query: 493 FFSTKFYSNCPFNFSKNNVIWNATTS 416
F T+ SNC F F + V WN+ S
Sbjct: 203 FIVTQSESNCKFRFDFSKVYWNSRLS 228
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 26.6 bits (56), Expect = 4.0
Identities = 8/30 (26%), Positives = 20/30 (66%)
Frame = -3
Query: 126 LRRIVTVSQSDMFNVDHWYDKTKQEYYYWF 37
+++I+ S M+ ++ WY+ K++Y++ F
Sbjct: 4508 VQKILPCSAGQMYALNAWYNTEKKKYFHTF 4537
>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 3227
Score = 26.2 bits (55), Expect = 5.3
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = -2
Query: 715 LQFIFNGGNISLTEISRQNKINAYI 641
+ I NG NI +TE+++QN +N +
Sbjct: 3040 VDLIPNGRNIPVTELNKQNYVNRMV 3064
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 26.2 bits (55), Expect = 5.3
Identities = 8/22 (36%), Positives = 12/22 (54%)
Frame = -2
Query: 475 YSNCPFNFSKNNVIWNATTSFI 410
Y C F+FSK+ +W F+
Sbjct: 157 YQTCKFHFSKSQCVWTLYLEFL 178
>SPCC417.08 |tef3||translation elongation factor
eEF3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1047
Score = 25.8 bits (54), Expect = 7.0
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -3
Query: 120 RIVTVSQSDMFNVDHWYDKTKQEYYYW 40
RI V+Q+ ++ H DKT EY W
Sbjct: 738 RIAYVAQAAFTHLGHHPDKTPSEYIQW 764
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,031,072
Number of Sequences: 5004
Number of extensions: 59934
Number of successful extensions: 142
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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