Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_F_N24
(801 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1324 + 32659752-32661972,32662067-32662761 34 0.15
05_03_0035 - 7592177-7592938 32 0.46
05_03_0033 - 7585267-7586028 32 0.46
02_01_0782 + 5827364-5827441,5827733-5827787,5828761-5828849,582... 31 1.1
05_03_0626 - 16335816-16335917,16336331-16336558,16336694-163369... 30 2.5
04_03_0446 - 16012926-16013042,16013266-16013469 30 2.5
09_06_0317 - 22265786-22267618,22267874-22268446,22268546-222686... 29 3.3
09_03_0099 + 12353777-12353877,12354022-12354220,12354720-123548... 29 5.7
09_06_0107 + 20907560-20908491,20908511-20908625,20908967-209090... 28 9.9
06_02_0092 - 11624905-11625123,11625206-11625292,11625767-116258... 28 9.9
04_03_0946 + 20975955-20976095,20976189-20976330,20976449-209765... 28 9.9
04_03_0719 + 19006730-19007440 28 9.9
03_04_0201 - 18409088-18409306,18409389-18409475,18409950-184100... 28 9.9
03_04_0134 - 17593449-17594702 28 9.9
>04_04_1324 + 32659752-32661972,32662067-32662761
Length = 971
Score = 33.9 bits (74), Expect = 0.15
Identities = 26/71 (36%), Positives = 32/71 (45%), Gaps = 3/71 (4%)
Frame = +3
Query: 213 EHLDRETKQDPADSPVH--HHRVATQSFLEM-ERGPAAEHRPPSVAEKLMDHMADKFTDS 383
EH + AD+ VH HR + S E P+ EHR SV+ A TDS
Sbjct: 396 EHRQLSMSLNDADTEVHGGEHRRLSMSLNEAGTEQPSGEHRQLSVSSS----DAGSSTDS 451
Query: 384 ESDADTAGESP 416
SD+DT G P
Sbjct: 452 TSDSDTPGGDP 462
>05_03_0035 - 7592177-7592938
Length = 253
Score = 32.3 bits (70), Expect = 0.46
Identities = 19/72 (26%), Positives = 30/72 (41%)
Frame = +3
Query: 228 ETKQDPADSPVHHHRVATQSFLEMERGPAAEHRPPSVAEKLMDHMADKFTDSESDADTAG 407
E +P P + S+ + + GP E +P A + T SES ++
Sbjct: 52 EKSSEPEAKPASQQEPKSDSYSQAKPGPKDEPKPEPEAMSASQPESKPATYSESKPESKA 111
Query: 408 ESPLHRPEPRVE 443
E P +PEP+ E
Sbjct: 112 E-PESKPEPKAE 122
>05_03_0033 - 7585267-7586028
Length = 253
Score = 32.3 bits (70), Expect = 0.46
Identities = 19/72 (26%), Positives = 30/72 (41%)
Frame = +3
Query: 228 ETKQDPADSPVHHHRVATQSFLEMERGPAAEHRPPSVAEKLMDHMADKFTDSESDADTAG 407
E +P P + S+ + + GP E +P A + T SES ++
Sbjct: 52 EKSSEPEAKPASQQEPKSDSYSQAKPGPKDEPKPEPEAMSASQPESKPATYSESKPESKA 111
Query: 408 ESPLHRPEPRVE 443
E P +PEP+ E
Sbjct: 112 E-PESKPEPKAE 122
>02_01_0782 +
5827364-5827441,5827733-5827787,5828761-5828849,
5829167-5829191,5829645-5829683,5830316-5830433,
5830857-5831023,5831155-5831518,5831589-5831701,
5832185-5832310,5832436-5833339,5833694-5834036
Length = 806
Score = 31.1 bits (67), Expect = 1.1
Identities = 16/43 (37%), Positives = 22/43 (51%)
Frame = -1
Query: 525 RARGPAPVSGRELQASVVPVSER*ASGVRPSARADGGATLLQY 397
R+R P P+ R AS+ P E A PSA ++G L+ Y
Sbjct: 754 RSRSPPPIHNRSPLASLSPKRESNAKSRSPSASSEGKKGLVSY 796
>05_03_0626 -
16335816-16335917,16336331-16336558,16336694-16336973,
16337596-16338560
Length = 524
Score = 29.9 bits (64), Expect = 2.5
Identities = 23/61 (37%), Positives = 25/61 (40%), Gaps = 2/61 (3%)
Frame = -1
Query: 801 PRQSVPRSASRSTTPQVP-FDRRLLXLR*HAP*V-RESAPASPXRGPALVARLAQAWAEP 628
P R S +P P F R L +R P R S P SP P ARL WA P
Sbjct: 93 PSPPPARHCSTPLSPSSPPFQPRGLLVRWAPPPAPRCSTPLSPYSPPFRPARLIVRWARP 152
Query: 627 P 625
P
Sbjct: 153 P 153
>04_03_0446 - 16012926-16013042,16013266-16013469
Length = 106
Score = 29.9 bits (64), Expect = 2.5
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = +1
Query: 289 SWRWNVGPQRNIGRLPSPKSLW 354
SWRW GR PSP+ +W
Sbjct: 46 SWRWRQAEGSPAGRSPSPRQIW 67
>09_06_0317 -
22265786-22267618,22267874-22268446,22268546-22268677,
22268931-22269137,22269287-22269388,22270742-22271032
Length = 1045
Score = 29.5 bits (63), Expect = 3.3
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = -2
Query: 374 KFVGHVVHKLFGDGRRPMFRCGPTFHLQETLSGH 273
K+ HV+ LF D CG F L+E LS H
Sbjct: 879 KYHAHVISTLFDDQSHQCNTCGLRFSLEEELSVH 912
>09_03_0099 +
12353777-12353877,12354022-12354220,12354720-12354845,
12354935-12355093,12356286-12356415,12356551-12356592,
12357507-12357806,12357933-12357984,12358157-12358234,
12359133-12359229
Length = 427
Score = 28.7 bits (61), Expect = 5.7
Identities = 22/64 (34%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Frame = +3
Query: 228 ETKQDP-ADSPVHHHRVATQSFLEMERGPAAEH-RPPSVAEKLMDHMADKFTDSESDADT 401
E ++D ADSP T S L+ME GP+A H + K D D F D + D
Sbjct: 267 EAEEDMFADSPKDK---TTASLLDMEPGPSAAHTSTTTTTSKEDDSDFDMFGDDDDKTDV 323
Query: 402 AGES 413
+S
Sbjct: 324 KRDS 327
>09_06_0107 +
20907560-20908491,20908511-20908625,20908967-20909058,
20909293-20909556,20910714-20911494
Length = 727
Score = 27.9 bits (59), Expect = 9.9
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +1
Query: 337 SPKSLWTTWPTNLPTVSQTPILQESRPSIGPS 432
SP T+W TN ++S +PIL P PS
Sbjct: 97 SPTPTTTSWTTNSSSISASPILPPPPPPPMPS 128
>06_02_0092 -
11624905-11625123,11625206-11625292,11625767-11625889,
11625992-11626351,11626427-11626511,11626603-11626661,
11627173-11627265,11627360-11627464,11627539-11627636,
11627811-11627916,11628009-11628131,11628986-11629021,
11629113-11629310,11629415-11629612,11629917-11630056,
11630181-11630322,11630416-11630556
Length = 770
Score = 27.9 bits (59), Expect = 9.9
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +3
Query: 294 EMERGPAAEHRPPSVAEKLMDHMADKFTDSESDADTAGES 413
E G ++R +V E LMD++ DS+ DA AG S
Sbjct: 238 EKNSGGNDQNRAWNVPEPLMDYLKTNLNDSQLDAVNAGLS 277
>04_03_0946 +
20975955-20976095,20976189-20976330,20976449-20976588,
20976893-20977090,20977195-20977392,20977484-20977519,
20978374-20978496,20978589-20978694,20978869-20978966,
20979041-20979145,20979240-20979332,20979842-20979900,
20979984-20980068,20980144-20980503,20980606-20980728,
20981203-20981289,20981372-20981590
Length = 770
Score = 27.9 bits (59), Expect = 9.9
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +3
Query: 294 EMERGPAAEHRPPSVAEKLMDHMADKFTDSESDADTAGES 413
E G ++R +V E LMD++ DS+ DA AG S
Sbjct: 238 EKNSGGNDQNRAWNVPEPLMDYLKTNLNDSQLDAVNAGLS 277
>04_03_0719 + 19006730-19007440
Length = 236
Score = 27.9 bits (59), Expect = 9.9
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = -3
Query: 427 GRWRGDSPAVSASDSLSVNLSAMWSISFSATEGGRCSAA 311
GR+ GD +AS SV+ AM +++ +A+ CS+A
Sbjct: 126 GRYDGDDHHDAASSVSSVDAGAMAAMAAAASSNSSCSSA 164
>03_04_0201 -
18409088-18409306,18409389-18409475,18409950-18410072,
18410175-18410534,18410610-18410694,18410780-18410838,
18411350-18411442,18411537-18411641,18411716-18411813,
18411988-18412093,18412186-18412308,18413163-18413198,
18413290-18413487,18413592-18413789,18414094-18414233,
18414356-18414497,18414591-18414731
Length = 770
Score = 27.9 bits (59), Expect = 9.9
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +3
Query: 294 EMERGPAAEHRPPSVAEKLMDHMADKFTDSESDADTAGES 413
E G ++R +V E LMD++ DS+ DA AG S
Sbjct: 238 EKNSGGNDQNRAWNVPEPLMDYLKTNLNDSQLDAVNAGLS 277
>03_04_0134 - 17593449-17594702
Length = 417
Score = 27.9 bits (59), Expect = 9.9
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +2
Query: 665 AGPRXGEAGADSRTYGACHRSXSNLLSNGTC 757
AG G G D+ ACH +LLS+ +C
Sbjct: 93 AGSGGGGGGGDNDDGDACHHRGGDLLSSSSC 123
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,998,768
Number of Sequences: 37544
Number of extensions: 409075
Number of successful extensions: 1362
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1319
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1361
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2174172540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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